ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal10l09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF287276.1|AF287276 Hordeum vulgare chlorophyll a/b-binding protein precursor (Lhca4) mRNA, partial cds; nuclear gene for chloroplast product Length = 687 Score = 842 bits (425), Expect = 0.0 Identities = 425/425 (100%) Strand = Plus / Minus Query: 216 ttattggccggagatggtctggatgatggtgttgtgccatgggtcggccaggtgctgctg 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 687 ttattggccggagatggtctggatgatggtgttgtgccatgggtcggccaggtgctgctg 628 Query: 276 caggttctcgaacggccccttcccggtcacgttgtgctgcaccaggaaccccaggaacgc 335 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 627 caggttctcgaacggccccttcccggtcacgttgtgctgcaccaggaaccccaggaacgc 568 Query: 336 cagcatggccagtctcccgttggcgagctccttctccttgttctcgagggtgggggcgaa 395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 567 cagcatggccagtctcccgttggcgagctccttctccttgttctcgagggtgggggcgaa 508 Query: 396 gttgagggggttgaagacgctgccggggtagccgcactcgtggggcgggaggctgtagct 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 507 gttgagggggttgaagacgctgccggggtagccgcactcgtggggcgggaggctgtagct 448 Query: 456 cttgaagatggggtcctggttgacggagcccgggttcttgatgtcctgccaccgccggat 515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 cttgaagatggggtcctggttgacggagcccgggttcttgatgtcctgccaccgccggat 388 Query: 516 ctcgacgtagtggaagaggatgaactcgatgacgaagagcgtggaggaggaggcgaagta 575 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 387 ctcgacgtagtggaagaggatgaactcgatgacgaagagcgtggaggaggaggcgaagta 328 Query: 576 ggtctccttgccggcgtcgtaccactcgggcgcgttcagcagccccgccttggtcagcac 635 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327 ggtctccttgccggcgtcgtaccactcgggcgcgttcagcagccccgccttggtcagcac 268 Query: 636 ctccg 640 ||||| Sbjct: 267 ctccg 263
>gb|S68729.1| LHC Ib-20=light-harvesting complex I [Hordeum vulgare=barley, Prato, mRNA Chloroplast, 939 nt] Length = 939 Score = 831 bits (419), Expect = 0.0 Identities = 506/527 (96%), Gaps = 16/527 (3%) Strand = Plus / Minus Query: 1 gttttaaaa-aacacgcatgggtg-atattacaagtacagcctccgtcggnaagccatgg 58 ||||||||| ||||||||||||| |||||||||||||||| |||||||| ||||||||| Sbjct: 902 gttttaaaataacacgcatgggtatatattacaagtacagc-tccgtcgg-aagccatgg 845 Query: 59 gcgaatccacaaggnacaaagtttcaccaccggnaactttaagattacaacacgtttttg 118 |||||||||||||| |||||||||||||||||| || ||||||||||||||||| Sbjct: 844 gcgaatccacaagg-acaaagtttcaccaccgg-------aacattacaacacgtttttg 793 Query: 119 cactgccacctactcctccacactttgtacatcctcagcaccccaaaataataattcaga 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 792 cactgccacctactcctccacactttgtacatcctcagcaccccaaaataataattcaga 733 Query: 179 ccacctgaaacctccttggtcggtgaaatcgacggatttattggccggagatggtctgga 238 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 732 ccacct-aaacctccttggtcggtgaaatcgacggatttattggccggagatggtctgga 674 Query: 239 tgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcc 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 673 tgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcc 614 Query: 299 cggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttgg 358 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 613 cgtgcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttgg 554 Query: 359 cgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaagacgctgc 418 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 553 cgagctccttctccttgttctcgag---gggggcgaagttgagggggttgaagactctgc 497 Query: 419 cggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcctggttga 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 cggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcctggttga 437 Query: 479 cggagcccgggttcttgatgtcctgccaccgccggatctcgacgtag 525 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 cggagcccgggttcttgatgtcctgccaccgccggatctcgacgtag 390 Score = 121 bits (61), Expect = 3e-24 Identities = 92/97 (94%), Gaps = 4/97 (4%) Strand = Plus / Minus Query: 548 cgaagagc-gtggaggaggaggcgaagtaggtctccttgcc-ggc-gtcgta-ccactcg 603 |||||||| |||||||||||||||||||||||||||||||| ||| |||||| ||||||| Sbjct: 371 cgaagagcagtggaggaggaggcgaagtaggtctccttgcctggcagtcgtaaccactcg 312 Query: 604 ggcgcgttcagcagccccgccttggtcagcacctccg 640 |||||||||| |||||||||||||||||||||||||| Sbjct: 311 ggcgcgttcatcagccccgccttggtcagcacctccg 275
>ref|XM_482572.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1070 Score = 513 bits (259), Expect = e-142 Identities = 349/379 (92%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 787 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 728 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 727 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 668 Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 411 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 667 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 608 Query: 412 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 471 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 607 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 548 Query: 472 tggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaag 531 ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 547 tggttgacgcagccagggttcttgatgtcctgccaccgccggatctccacgtagtggaac 488 Query: 532 aggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcg 591 |||||||||||||||||||| ||||| || || || ||||||||||| ||||||||||| Sbjct: 487 aggatgaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggcg 428 Query: 592 tcgtaccactcgggcgcgt 610 |||||||||| ||||||| Sbjct: 427 tcgtaccactgcggcgcgt 409
>ref|XM_507585.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1138 Score = 513 bits (259), Expect = e-142 Identities = 349/379 (92%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 791 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 732 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 731 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 672 Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 411 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 671 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 612 Query: 412 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 471 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 611 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 552 Query: 472 tggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaag 531 ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 551 tggttgacgcagccagggttcttgatgtcctgccaccgccggatctccacgtagtggaac 492 Query: 532 aggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcg 591 |||||||||||||||||||| ||||| || || || ||||||||||| ||||||||||| Sbjct: 491 aggatgaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggcg 432 Query: 592 tcgtaccactcgggcgcgt 610 |||||||||| ||||||| Sbjct: 431 tcgtaccactgcggcgcgt 413
>ref|XM_507584.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1138 Score = 513 bits (259), Expect = e-142 Identities = 349/379 (92%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 791 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 732 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 731 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 672 Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 411 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 671 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 612 Query: 412 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 471 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 611 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 552 Query: 472 tggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaag 531 ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 551 tggttgacgcagccagggttcttgatgtcctgccaccgccggatctccacgtagtggaac 492 Query: 532 aggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcg 591 |||||||||||||||||||| ||||| || || || ||||||||||| ||||||||||| Sbjct: 491 aggatgaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggcg 432 Query: 592 tcgtaccactcgggcgcgt 610 |||||||||| ||||||| Sbjct: 431 tcgtaccactgcggcgcgt 413
>ref|XM_507583.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1178 Score = 513 bits (259), Expect = e-142 Identities = 349/379 (92%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 788 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 729 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 728 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 669 Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 411 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 668 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 609 Query: 412 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 471 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 608 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 549 Query: 472 tggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaag 531 ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 548 tggttgacgcagccagggttcttgatgtcctgccaccgccggatctccacgtagtggaac 489 Query: 532 aggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcg 591 |||||||||||||||||||| ||||| || || || ||||||||||| ||||||||||| Sbjct: 488 aggatgaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggcg 429 Query: 592 tcgtaccactcgggcgcgt 610 |||||||||| ||||||| Sbjct: 428 tcgtaccactgcggcgcgt 410
>ref|XM_507582.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1188 Score = 513 bits (259), Expect = e-142 Identities = 349/379 (92%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 787 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 728 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 727 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 668 Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 411 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 667 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 608 Query: 412 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 471 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 607 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 548 Query: 472 tggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaag 531 ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 547 tggttgacgcagccagggttcttgatgtcctgccaccgccggatctccacgtagtggaac 488 Query: 532 aggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcg 591 |||||||||||||||||||| ||||| || || || ||||||||||| ||||||||||| Sbjct: 487 aggatgaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggcg 428 Query: 592 tcgtaccactcgggcgcgt 610 |||||||||| ||||||| Sbjct: 427 tcgtaccactgcggcgcgt 409
>ref|XM_507239.2| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1191 Score = 513 bits (259), Expect = e-142 Identities = 349/379 (92%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 790 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 731 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 730 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 671 Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 411 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 670 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 611 Query: 412 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 471 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 610 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 551 Query: 472 tggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaag 531 ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 550 tggttgacgcagccagggttcttgatgtcctgccaccgccggatctccacgtagtggaac 491 Query: 532 aggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcg 591 |||||||||||||||||||| ||||| || || || ||||||||||| ||||||||||| Sbjct: 490 aggatgaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggcg 431 Query: 592 tcgtaccactcgggcgcgt 610 |||||||||| ||||||| Sbjct: 430 tcgtaccactgcggcgcgt 412
>dbj|AK104499.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-E04, full insert sequence Length = 1140 Score = 513 bits (259), Expect = e-142 Identities = 349/379 (92%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 791 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 732 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 731 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 672 Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 411 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 671 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 612 Query: 412 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 471 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 611 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 552 Query: 472 tggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaag 531 ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 551 tggttgacgcagccagggttcttgatgtcctgccaccgccggatctccacgtagtggaac 492 Query: 532 aggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcg 591 |||||||||||||||||||| ||||| || || || ||||||||||| ||||||||||| Sbjct: 491 aggatgaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggcg 432 Query: 592 tcgtaccactcgggcgcgt 610 |||||||||| ||||||| Sbjct: 431 tcgtaccactgcggcgcgt 413
>dbj|AK104416.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-G03, full insert sequence Length = 1177 Score = 513 bits (259), Expect = e-142 Identities = 349/379 (92%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 788 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 729 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 728 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 669 Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 411 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 668 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 609 Query: 412 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 471 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 608 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 549 Query: 472 tggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaag 531 ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 548 tggttgacgcagccagggttcttgatgtcctgccaccgccggatctccacgtagtggaac 489 Query: 532 aggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcg 591 |||||||||||||||||||| ||||| || || || ||||||||||| ||||||||||| Sbjct: 488 aggatgaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggcg 429 Query: 592 tcgtaccactcgggcgcgt 610 |||||||||| ||||||| Sbjct: 428 tcgtaccactgcggcgcgt 410
>dbj|AK067809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121A03, full insert sequence Length = 1190 Score = 513 bits (259), Expect = e-142 Identities = 349/379 (92%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 789 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 730 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 729 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 670 Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 411 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 669 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 610 Query: 412 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 471 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 609 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 550 Query: 472 tggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaag 531 ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 549 tggttgacgcagccagggttcttgatgtcctgccaccgccggatctccacgtagtggaac 490 Query: 532 aggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcg 591 |||||||||||||||||||| ||||| || || || ||||||||||| ||||||||||| Sbjct: 489 aggatgaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggcg 430 Query: 592 tcgtaccactcgggcgcgt 610 |||||||||| ||||||| Sbjct: 429 tcgtaccactgcggcgcgt 411
>dbj|AK067712.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120A20, full insert sequence Length = 1138 Score = 513 bits (259), Expect = e-142 Identities = 349/379 (92%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 791 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 732 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 731 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 672 Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 411 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 671 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 612 Query: 412 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 471 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 611 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 552 Query: 472 tggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaag 531 ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 551 tggttgacgcagccagggttcttgatgtcctgccaccgccggatctccacgtagtggaac 492 Query: 532 aggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcg 591 |||||||||||||||||||| ||||| || || || ||||||||||| ||||||||||| Sbjct: 491 aggatgaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggcg 432 Query: 592 tcgtaccactcgggcgcgt 610 |||||||||| ||||||| Sbjct: 431 tcgtaccactgcggcgcgt 413
>dbj|AK060222.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F08, full insert sequence Length = 1078 Score = 513 bits (259), Expect = e-142 Identities = 349/379 (92%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 796 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 737 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 736 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 677 Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 411 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 676 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 617 Query: 412 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 471 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 616 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 557 Query: 472 tggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaag 531 ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 556 tggttgacgcagccagggttcttgatgtcctgccaccgccggatctccacgtagtggaac 497 Query: 532 aggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcg 591 |||||||||||||||||||| ||||| || || || ||||||||||| ||||||||||| Sbjct: 496 aggatgaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggcg 437 Query: 592 tcgtaccactcgggcgcgt 610 |||||||||| ||||||| Sbjct: 436 tcgtaccactgcggcgcgt 418
>dbj|AK103921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B07, full insert sequence Length = 1193 Score = 490 bits (247), Expect = e-135 Identities = 346/379 (91%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 792 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 733 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 732 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 673 Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 411 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 672 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 613 Query: 412 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 471 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 612 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 553 Query: 472 tggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaag 531 ||||||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 552 tggttgacgcagccagggtccttgatgtcctgccaccgccggatctccacgtagtggaac 493 Query: 532 aggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcg 591 ||||||||||||||||||| ||||| || || || ||||||||||| ||||||||| | Sbjct: 492 gggatgaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggtg 433 Query: 592 tcgtaccactcgggcgcgt 610 |||||||||| ||||||| Sbjct: 432 tcgtaccactgtggcgcgt 414
>ref|XM_482573.1| Oryza sativa (japonica cultivar-group), mRNA Length = 576 Score = 488 bits (246), Expect = e-134 Identities = 343/374 (91%), Gaps = 1/374 (0%) Strand = Plus / Plus Query: 238 atgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttc 297 ||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||||||||| Sbjct: 1 atgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggccccttc 60 Query: 298 ccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctccc-gtt 356 |||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||| Sbjct: 61 tgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctccctgtt 120 Query: 357 ggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaagacgct 416 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 121 ggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaagacgct 180 Query: 417 gccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcctggtt 476 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 181 gccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcctggtt 240 Query: 477 gacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggat 536 |||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 241 gacgcagccagggttcttgatgtcctgccaccgccggatctccacgtagtggaacaggat 300 Query: 537 gaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcgtcgta 596 ||||||||||||||| ||||| || || || ||||||||||| |||||||||||||||| Sbjct: 301 gaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggcgtcgta 360 Query: 597 ccactcgggcgcgt 610 ||||| ||||||| Sbjct: 361 ccactgcggcgcgt 374
>gb|AY445626.2| Oryza sativa (japonica cultivar-group) chlorophyll a/b binding protein presusor mRNA, complete cds; nuclear gene for chloroplast product Length = 1128 Score = 484 bits (244), Expect = e-133 Identities = 348/380 (91%), Gaps = 2/380 (0%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 767 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 708 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 707 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 648 Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgaggggg-ttgaa 410 |||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| Sbjct: 647 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgaggggggttgaa 588 Query: 411 gacgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtc 470 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 587 gacgctgccggg-tagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtc 529 Query: 471 ctggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 530 |||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 528 ctggttgacgcagccagggttcttgatgtcctgccaccgccggatctccacgtagtggaa 469 Query: 531 gaggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggc 590 |||||||||||||||||||| ||||| || || || ||||||||||| |||||||||| Sbjct: 468 caggatgaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggc 409 Query: 591 gtcgtaccactcgggcgcgt 610 ||||||||||| ||||||| Sbjct: 408 gtcgtaccactgcggcgcgt 389
>gb|AF094775.1|AF094775 Oryza sativa chlorophyll a/b-binding protein presursor (Cab27) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1162 Score = 458 bits (231), Expect = e-125 Identities = 342/379 (90%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 754 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 695 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 694 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 635 Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 411 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 634 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 575 Query: 412 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 471 ||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| Sbjct: 574 acgctgccggggtagccgcactcgtcgctggggagtctgtagctcttgaagatggggtcc 515 Query: 472 tggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaag 531 ||||||||| |||| ||||||||||||||||||||| | |||||||| ||||||||||| Sbjct: 514 tggttgacgcagccagggttcttgatgtcctgccactggcggatctccacgtagtggaac 455 Query: 532 aggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcg 591 |||||||||||||||||||| |||||| || || ||||||||||| ||||||||||| Sbjct: 454 aggatgaactcgatgacgaacagcgtgttcgacgacgcgaagtaggtggccttgccggcg 395 Query: 592 tcgtaccactcgggcgcgt 610 |||||||||| ||||||| Sbjct: 394 tcgtaccactgcggcgcgt 376
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 371 bits (187), Expect = 2e-99 Identities = 241/259 (93%) Strand = Plus / Plus Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 411 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 21164651 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 21164710 Query: 412 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 471 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 21164711 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 21164770 Query: 472 tggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaag 531 ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 21164771 tggttgacgcagccagggttcttgatgtcctgccaccgccggatctccacgtagtggaac 21164830 Query: 532 aggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcg 591 |||||||||||||||||||| ||||| || || || ||||||||||| ||||||||||| Sbjct: 21164831 aggatgaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggcg 21164890 Query: 592 tcgtaccactcgggcgcgt 610 |||||||||| ||||||| Sbjct: 21164891 tcgtaccactgcggcgcgt 21164909 Score = 147 bits (74), Expect = 5e-32 Identities = 110/122 (90%) Strand = Plus / Plus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 21164438 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 21164497 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 21164498 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 21164557 Query: 352 cc 353 || Sbjct: 21164558 cc 21164559
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 371 bits (187), Expect = 2e-99 Identities = 241/259 (93%) Strand = Plus / Plus Query: 352 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 411 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 135861 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 135920 Query: 412 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 471 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 135921 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 135980 Query: 472 tggttgacggagcccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaag 531 ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 135981 tggttgacgcagccagggttcttgatgtcctgccaccgccggatctccacgtagtggaac 136040 Query: 532 aggatgaactcgatgacgaagagcgtggaggaggaggcgaagtaggtctccttgccggcg 591 |||||||||||||||||||| ||||| || || || ||||||||||| ||||||||||| Sbjct: 136041 aggatgaactcgatgacgaacagcgtcgacgacgacgcgaagtaggtggccttgccggcg 136100 Query: 592 tcgtaccactcgggcgcgt 610 |||||||||| ||||||| Sbjct: 136101 tcgtaccactgcggcgcgt 136119 Score = 147 bits (74), Expect = 5e-32 Identities = 110/122 (90%) Strand = Plus / Plus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 135648 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 135707 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 135708 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 135767 Query: 352 cc 353 || Sbjct: 135768 cc 135769
>emb|Z17226.1|PSLHCA411 Pinus sylvestris Lhca4*1-1 gene encoding Lhca4 protein (type 4 protein of light-harvesting complex of photosystem I) Length = 1013 Score = 87.7 bits (44), Expect = 4e-14 Identities = 140/172 (81%) Strand = Plus / Minus Query: 241 atggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccg 300 ||||||||||||||||| || | ||| || ||| ||| ||| |||||||| ||||| || Sbjct: 735 atggtgttgtgccatggatcagacagatgttgcagcaagttgtcgaacgggccctttcct 676 Query: 301 gtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcg 360 || || ||||| ||||| | || |||||||| || | ||| |||| |||||| |||||| Sbjct: 675 gttacattgtgttgcactacaaatcccaggaatgctaacattgccaatctcccattggcg 616 Query: 361 agctccttctccttgttctcgagggtgggggcgaagttgagggggttgaaga 412 ||||||||||||||| ||| | || |||| ||||||||| |||||||||| Sbjct: 615 agctccttctccttggcctccatggatggggagaagttgagagggttgaaga 564
>emb|Z16409.1|PSLHCA412 P.sylvestris Lhca4*1-2 mRNA encoding Lhca4 protein (type 4 protein of light-harvesting complex of photosystem I) (partial) Length = 968 Score = 87.7 bits (44), Expect = 4e-14 Identities = 140/172 (81%) Strand = Plus / Minus Query: 241 atggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccg 300 ||||||||||||||||| || | ||| || ||| ||| ||| |||||||| ||||| || Sbjct: 712 atggtgttgtgccatggatcagacagatgttgcagcaagttgtcgaacgggccctttcct 653 Query: 301 gtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcg 360 || || ||||| ||||| | || |||||||| || | ||| |||| |||||| |||||| Sbjct: 652 gttacattgtgttgcactacaaatcccaggaatgctaacattgccaatctcccattggcg 593 Query: 361 agctccttctccttgttctcgagggtgggggcgaagttgagggggttgaaga 412 ||||||||||||||| ||| | || |||| ||||||||| |||||||||| Sbjct: 592 agctccttctccttggcctccatggatggggagaagttgagagggttgaaga 541
>emb|X82497.1|NTCAG4 N.tabacum mRNA for light-harvesting Ch1 a/b binding protein Length = 726 Score = 85.7 bits (43), Expect = 2e-13 Identities = 96/114 (84%) Strand = Plus / Minus Query: 447 gctgtagctcttgaagatggggtcctggttgacggagcccgggttcttgatgtcctgcca 506 ||||||| |||||||||||||| | ||||| || || |||||||||||||| ||||| Sbjct: 375 gctgtagttcttgaagatggggncttggttaacacttcctgggttcttgatgtcttgcca 316 Query: 507 ccgccggatctcgacgtagtggaagaggatgaactcgatgacgaagagcgtgga 560 || | |||||||||||||||||| | |||||||||||| ||||| || ||||| Sbjct: 315 ccttctgatctcgacgtagtggaacaagatgaactcgatcacgaacagggtgga 262 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 241 atggtgttgtgccatgggtcgg 262 |||||||||||||||||||||| Sbjct: 581 atggtgttgtgccatgggtcgg 560
>emb|X57706.1|LECAB11 L.esculentum DNA for CAB11 gene Length = 1393 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 235 tggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggcccc 294 |||||||||||||||||||||||||| | ||||||||| | ||||| || || || ||| Sbjct: 1192 tggatgatggtgttgtgccatgggtcagagaggtgctgcagaaggttgtcaaaaggtccc 1133 Query: 295 ttcccggtcacgttgtgctgcac 317 ||||| ||||| ||||||||||| Sbjct: 1132 ttcccagtcacattgtgctgcac 1110 Score = 77.8 bits (39), Expect = 4e-11 Identities = 84/99 (84%) Strand = Plus / Minus Query: 447 gctgtagctcttgaagatggggtcctggttgacggagcccgggttcttgatgtcctgcca 506 ||||||| |||||||||| ||||| |||||||| || |||||||| ||||| ||||| Sbjct: 903 gctgtagttcttgaagatagggtcttggttgacacttcctgggttcttaatgtcttgcca 844 Query: 507 ccgccggatctcgacgtagtggaagaggatgaactcgat 545 || | |||||||||||||||||| | |||||||||||| Sbjct: 843 ccttctgatctcgacgtagtggaacaagatgaactcgat 805
>emb|AJ579711.2|BVU579711 Beta vulgaris mRNA for chloroplast chlorophyll a/b binding protein (cab11 gene) Length = 1062 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/144 (81%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||| || |||||||||||||||||||| | || |||||| | ||||| || || ||| Sbjct: 857 gtctgaataatggtgttgtgccatgggtctgatagatgctgcagaaggttatcaaaaggc 798 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 ||||| || ||||| ||||| ||||| | ||| || | ||| |||| ||| |||| |||| Sbjct: 797 ccctttccagtcacattgtgttgcacaatgaatcctaagaatgccaacattgccaatctc 738 Query: 352 ccgttggcgagctccttctccttg 375 || || || ||||||||||||||| Sbjct: 737 ccattagcaagctccttctccttg 714 Score = 48.1 bits (24), Expect = 0.036 Identities = 48/56 (85%) Strand = Plus / Minus Query: 487 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactc 542 |||||||||||||||||||| | || ||||| || |||||||| | ||||||||| Sbjct: 602 gggttcttgatgtcctgccatctccttatctccacatagtggaataagatgaactc 547
>emb|AJ309094.1|PPI309094 Pinus pinaster mRNA for putative chlorophyll a/b-binding protein type 4 Length = 819 Score = 71.9 bits (36), Expect = 2e-09 Identities = 138/172 (80%) Strand = Plus / Minus Query: 241 atggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccg 300 ||||||||||||||||| || | ||| || ||| ||| ||| |||||||| ||||| || Sbjct: 743 atggtgttgtgccatggatcagacagatgttgcagcaagttgtcgaacgggccctttcct 684 Query: 301 gtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcg 360 || || ||||| ||||| | || |||||||| || | ||| |||| ||||| ||||| Sbjct: 683 gttacattgtgttgcactacaaatcccaggaatgctaacattgccaacctcccattggca 624 Query: 361 agctccttctccttgttctcgagggtgggggcgaagttgagggggttgaaga 412 ||||||||||||||| ||| | || |||| ||||||||| |||||||||| Sbjct: 623 agctccttctccttggcctccatggatggggagaagttgagcgggttgaaga 572
>gb|BC002118.1| Mus musculus cDNA clone MGC:6623 IMAGE:3491066, complete cds Length = 1008 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/144 (81%) Strand = Plus / Minus Query: 232 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 291 ||||| || |||||||||||||||||||| | || |||||| | ||||| || || ||| Sbjct: 773 gtctgaataatggtgttgtgccatgggtctgatagatgctgcagaaggttatcaaaaggc 714 Query: 292 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 351 ||||| || ||||| ||||| ||||| | ||| || | ||| |||| ||| |||| |||| Sbjct: 713 ccctttccagtcacattgtgttgcacaatgaatcctaagaatgccaacattgccaatctc 654 Query: 352 ccgttggcgagctccttctccttg 375 || || || ||||||||||||||| Sbjct: 653 ccattagcaagctccttctccttg 630 Score = 48.1 bits (24), Expect = 0.036 Identities = 48/56 (85%) Strand = Plus / Minus Query: 487 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactc 542 |||||||||||||||||||| | || ||||| || |||||||| | ||||||||| Sbjct: 518 gggttcttgatgtcctgccatctccttatctccacatagtggaataagatgaactc 463
>gb|AY233205.1| Vitis vinifera chlorophyll a/b-binding protein (Lhca1) mRNA, partial cds; nuclear gene for chloroplast product Length = 476 Score = 65.9 bits (33), Expect = 2e-07 Identities = 213/273 (78%) Strand = Plus / Minus Query: 235 tggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggcccc 294 |||||||||||||||||||||||||| | | ||||||| ||||| || || ||||| Sbjct: 273 tggatgatggtgttgtgccatgggtctgagatgtgctgcaagaggttgtcaaatggccct 214 Query: 295 ttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccg 354 || || ||||||||||| || || | ||||||||||| |||| ||| || | ||||||| Sbjct: 213 tttccagtcacgttgtgttgaacaataaaccccaggaatgccaacattgctaatctcccg 154 Query: 355 ttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaagacg 414 || || || ||||| |||||| ||| || || || ||||| ||||||||||| | Sbjct: 153 ttagcaagttccttttccttggcctcctcagttggtgcaaagttcagggggttgaaaata 94 Query: 415 ctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcctgg 474 | |||||||| || ||| | ||| || | ||||||| ||||||| ||||| |||||| Sbjct: 93 ccaccggggtaacccacctcattgggaggtaagctgtagttcttgaaaatgggatcctgg 34 Query: 475 ttgacggagcccgggttcttgatgtcctgccac 507 || || || ||||||||||||||||||||| Sbjct: 33 ttcacacttcctgggttcttgatgtcctgccac 1
>gb|AF359128.1| Pinus sylvestris plus tree E1101 LHC I type IV chlorophyll binding protein (LHCA4) gene, partial cds; nuclear gene for chloroplast product Length = 498 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 355 ttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaaga 412 ||||||||||||||||||||| ||| | || |||| ||||||||| |||||||||| Sbjct: 318 ttggcgagctccttctccttggcctccatggatggggagaagttgagagggttgaaga 261
>gb|AF359127.1| Pinus sylvestris plus tree E635C LHC I type IV chlorophyll binding protein (LHCA4) gene, partial cds; nuclear gene for chloroplast product Length = 521 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 355 ttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaaga 412 ||||||||||||||||||||| ||| | || |||| ||||||||| |||||||||| Sbjct: 318 ttggcgagctccttctccttggcctccatggatggggagaagttgagagggttgaaga 261
>dbj|AB122117.1| Chlamydomonas reinhardtii LhcI-4 gene for light-harvesting chlorophyll-a/b protein of photosystem I, complete cds Length = 1970 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 581 ccttgccggcgtcgtaccactcgggcgcgttcag 614 |||||||||||||||||||||| ||| ||||||| Sbjct: 868 ccttgccggcgtcgtaccactcaggcacgttcag 835
>ref|NM_114615.3| Arabidopsis thaliana CAB4; chlorophyll binding AT3G47470 (CAB4) mRNA, complete cds Length = 1266 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 487 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgatg 546 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 751 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgatc 692 Query: 547 acgaa 551 ||||| Sbjct: 691 acgaa 687 Score = 48.1 bits (24), Expect = 0.036 Identities = 105/132 (79%) Strand = Plus / Minus Query: 244 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 303 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 994 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 935 Query: 304 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 363 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 934 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 875 Query: 364 tccttctccttg 375 || ||||||||| Sbjct: 874 tctttctccttg 863
>gb|BT000093.1| Arabidopsis thaliana chlorophyll A-B binding protein 4 precursor homolog (At3g47470) mRNA, complete cds Length = 891 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 487 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgatg 546 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 491 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgatc 432 Query: 547 acgaa 551 ||||| Sbjct: 431 acgaa 427 Score = 48.1 bits (24), Expect = 0.036 Identities = 105/132 (79%) Strand = Plus / Minus Query: 244 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 303 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 734 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 675 Query: 304 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 363 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 674 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 615 Query: 364 tccttctccttg 375 || ||||||||| Sbjct: 614 tctttctccttg 603
>emb|AL132955.1|ATF1P2 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2 Length = 101154 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Plus Query: 487 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgatg 546 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 7325 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgatc 7384 Query: 547 acgaa 551 ||||| Sbjct: 7385 acgaa 7389
>gb|AY093080.1| Arabidopsis thaliana chlorophyll A-B binding protein 4 precursor homolog (At3g47470) mRNA, complete cds Length = 1055 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 487 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgatg 546 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 591 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgatc 532 Query: 547 acgaa 551 ||||| Sbjct: 531 acgaa 527 Score = 48.1 bits (24), Expect = 0.036 Identities = 105/132 (79%) Strand = Plus / Minus Query: 244 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 303 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 834 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 775 Query: 304 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 363 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 774 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 715 Query: 364 tccttctccttg 375 || ||||||||| Sbjct: 714 tctttctccttg 703
>gb|AF325012.2|AF325012 Arabidopsis thaliana AT3g47470 (AT3g47470/F1P2_20) mRNA, complete cds Length = 715 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 487 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgatg 546 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 208 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgatc 149 Query: 547 acgaa 551 ||||| Sbjct: 148 acgaa 144 Score = 48.1 bits (24), Expect = 0.036 Identities = 105/132 (79%) Strand = Plus / Minus Query: 244 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 303 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 451 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 392 Query: 304 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 363 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 391 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 332 Query: 364 tccttctccttg 375 || ||||||||| Sbjct: 331 tctttctccttg 320
>emb|BX826089.1|CNS0A6C9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZA10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 973 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 487 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgatg 546 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 581 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgatc 522 Query: 547 acgaa 551 ||||| Sbjct: 521 acgaa 517 Score = 48.1 bits (24), Expect = 0.036 Identities = 105/132 (79%) Strand = Plus / Minus Query: 244 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 303 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 824 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 765 Query: 304 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 363 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 764 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 705 Query: 364 tccttctccttg 375 || ||||||||| Sbjct: 704 tctttctccttg 693
>emb|BX825536.1|CNS0A6EC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL42ZH07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1035 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 487 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgatg 546 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 578 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgatc 519 Query: 547 acgaa 551 ||||| Sbjct: 518 acgaa 514
>emb|BX823268.1|CNS0A6MH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS18ZF07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1046 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 487 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgatg 546 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 565 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgatc 506 Query: 547 acgaa 551 ||||| Sbjct: 505 acgaa 501 Score = 48.1 bits (24), Expect = 0.036 Identities = 105/132 (79%) Strand = Plus / Minus Query: 244 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 303 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 808 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 749 Query: 304 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 363 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 748 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 689 Query: 364 tccttctccttg 375 || ||||||||| Sbjct: 688 tctttctccttg 677
>gb|AY086470.1| Arabidopsis thaliana clone 2531 mRNA, complete sequence Length = 1267 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 487 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgatg 546 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 752 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgatc 693 Query: 547 acgaa 551 ||||| Sbjct: 692 acgaa 688 Score = 48.1 bits (24), Expect = 0.036 Identities = 105/132 (79%) Strand = Plus / Minus Query: 244 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 303 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 995 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 936 Query: 304 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 363 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 935 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 876 Query: 364 tccttctccttg 375 || ||||||||| Sbjct: 875 tctttctccttg 864
>gb|M63931.1|ATHCABM Arabidopsis thaliana light-harvesting chlorophyll a/b-binding protein (Cab4) mRNA, complete cds Length = 1050 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 487 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgatg 546 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 561 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgatc 502 Query: 547 acgaa 551 ||||| Sbjct: 501 acgaa 497 Score = 48.1 bits (24), Expect = 0.036 Identities = 105/132 (79%) Strand = Plus / Minus Query: 244 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 303 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 804 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 745 Query: 304 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 363 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 744 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 685 Query: 364 tccttctccttg 375 || ||||||||| Sbjct: 684 tctttctccttg 673
>gb|BT015429.1| Arabidopsis thaliana At3g47470 mRNA sequence Length = 405 Score = 48.1 bits (24), Expect = 0.036 Identities = 105/132 (79%) Strand = Plus / Minus Query: 244 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 303 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 383 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 324 Query: 304 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 363 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 323 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 264 Query: 364 tccttctccttg 375 || ||||||||| Sbjct: 263 tctttctccttg 252 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Minus Query: 487 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgat 545 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 140 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgat 82
>emb|BX824775.1|CNS0A6UB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH71ZB01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 508 Score = 48.1 bits (24), Expect = 0.036 Identities = 105/132 (79%) Strand = Plus / Minus Query: 244 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 303 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 297 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 238 Query: 304 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 363 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 237 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 178 Query: 364 tccttctccttg 375 || ||||||||| Sbjct: 177 tctttctccttg 166 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 487 gggttcttgatgtcctgccaccgccggatctcgacgta 524 |||||||||||||| |||||||| | |||||| ||||| Sbjct: 54 gggttcttgatgtcttgccaccgtctgatctcaacgta 17
>gb|AY109341.1| Zea mays CL4601_3 mRNA sequence Length = 1460 Score = 48.1 bits (24), Expect = 0.036 Identities = 24/24 (100%) Strand = Plus / Plus Query: 231 ggtctggatgatggtgttgtgcca 254 |||||||||||||||||||||||| Sbjct: 280 ggtctggatgatggtgttgtgcca 303
>gb|AF110786.1|AF110786 Volvox carteri f. nagariensis clone G18 light harvesting complex a protein (lhca) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1047 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 581 ccttgccggcgtcgtaccactcgggcgcgttcagc 615 ||||||| |||||||||||||| ||| |||||||| Sbjct: 380 ccttgccagcgtcgtaccactccggcacgttcagc 346
>gb|AC019013.2|AC019013 Genomic Sequence For Arabidopsis thaliana, Clone T5E15, Chromosome V, complete sequence Length = 114056 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 127 cctactcctccacactttgtaca 149 ||||||||||||||||||||||| Sbjct: 37526 cctactcctccacactttgtaca 37504
>ref|XM_747159.1| Aspergillus fumigatus Af293 septin (Afu1g08850) partial mRNA Length = 1041 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 537 gaactcgatgacgaagagcgtg 558 |||||||||||||||||||||| Sbjct: 661 gaactcgatgacgaagagcgtg 682
>gb|AC007852.9| Drosophila melanogaster clone BACR33A10, complete sequence Length = 186333 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 ctgccacctactcctccacac 141 ||||||||||||||||||||| Sbjct: 11776 ctgccacctactcctccacac 11756
>gb|AC007588.5| Drosophila melanogaster clone BACR30O03, complete sequence Length = 165177 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 ctgccacctactcctccacac 141 ||||||||||||||||||||| Sbjct: 60657 ctgccacctactcctccacac 60677
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 613 agcagccccgccttggtcagcacct 637 ||||||||||||| ||||||||||| Sbjct: 600709 agcagccccgcctcggtcagcacct 600685
>emb|BX571658.1| Wolinella succinogenes, complete genome; segment 2/7 Length = 346792 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 557 tggaggaggaggcgaagtaggtctc 581 ||||||||||||||||| ||||||| Sbjct: 323410 tggaggaggaggcgaagaaggtctc 323434
>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17, complete sequence Length = 141041 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 554 gcgtggaggaggaggcgaagt 574 ||||||||||||||||||||| Sbjct: 116464 gcgtggaggaggaggcgaagt 116484
>gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosome 12, complete sequence Length = 222209 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 cagcaccccaaaataataatt 174 ||||||||||||||||||||| Sbjct: 97909 cagcaccccaaaataataatt 97929
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 554 gcgtggaggaggaggcgaagt 574 ||||||||||||||||||||| Sbjct: 15262765 gcgtggaggaggaggcgaagt 15262785
>ref|XM_392275.2| PREDICTED: Apis mellifera similar to ENSANGP00000012777 (LOC408740), mRNA Length = 1629 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 ttctccttgttctcgagggtg 387 ||||||||||||||||||||| Sbjct: 1022 ttctccttgttctcgagggtg 1002
>gb|AF276663.1|AF276663 Drosophila melanogaster comb (cg) gene, complete cds, alternatively spliced Length = 9504 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 ctgccacctactcctccacac 141 ||||||||||||||||||||| Sbjct: 4304 ctgccacctactcctccacac 4324
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 gatggtctggatgatggtgtt 248 ||||||||||||||||||||| Sbjct: 631602 gatggtctggatgatggtgtt 631582
>gb|AY107739.1| Zea mays PCO089350 mRNA sequence Length = 645 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 426 gccgcactcgtggggcgggaggctg 450 |||||||||||||||| |||||||| Sbjct: 310 gccgcactcgtggggctggaggctg 286
>gb|AE003815.4| Drosophila melanogaster chromosome 2R, section 35 of 73 of the complete sequence Length = 229685 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 ctgccacctactcctccacac 141 ||||||||||||||||||||| Sbjct: 31518 ctgccacctactcctccacac 31538
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 554 gcgtggaggaggaggcgaagt 574 ||||||||||||||||||||| Sbjct: 15271006 gcgtggaggaggaggcgaagt 15271026
>gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complete sequence Length = 217949 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 cagcaccccaaaataataatt 174 ||||||||||||||||||||| Sbjct: 9849 cagcaccccaaaataataatt 9829
>ref|NM_188089.1| Oryza sativa (japonica cultivar-group), Ozsa8521 predicted mRNA Length = 1089 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 224 cggagatggtctggatgatggtgttgtg 251 ||||||||||||||| ||||| |||||| Sbjct: 1009 cggagatggtctggaggatggcgttgtg 982
>ref|XM_514527.1| PREDICTED: Pan troglodytes ribosome binding protein 1 (LOC458109), mRNA Length = 7485 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 gaagagcgtggaggaggagg 568 |||||||||||||||||||| Sbjct: 5790 gaagagcgtggaggaggagg 5809
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tggcgagctccttctccttg 375 |||||||||||||||||||| Sbjct: 363820 tggcgagctccttctccttg 363839
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 605 gcgcgttcagcagccccgcc 624 |||||||||||||||||||| Sbjct: 3493370 gcgcgttcagcagccccgcc 3493351
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 gagcgtggaggaggaggcga 571 |||||||||||||||||||| Sbjct: 669641 gagcgtggaggaggaggcga 669660
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 605 gcgcgttcagcagccccgcc 624 |||||||||||||||||||| Sbjct: 529612 gcgcgttcagcagccccgcc 529593
>emb|AL133520.5| Human DNA sequence from clone RP1-101A2 on chromosome 20, complete sequence Length = 47325 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 gtgctgcaccaggaaccccaggaa 332 |||| ||||||||||||||||||| Sbjct: 32871 gtgcagcaccaggaaccccaggaa 32848
>ref|XM_567806.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNK01210) partial mRNA Length = 1432 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tggcgagctccttctccttg 375 |||||||||||||||||||| Sbjct: 1096 tggcgagctccttctccttg 1077
>gb|BC020482.1| Homo sapiens ribosome binding protein 1 homolog 180kDa (dog), mRNA (cDNA clone IMAGE:3919185) Length = 1638 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 gaagagcgtggaggaggagg 568 |||||||||||||||||||| Sbjct: 1441 gaagagcgtggaggaggagg 1460
>gb|AC024608.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-333I24, complete sequence Length = 215829 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 catcctcagcaccccaaaat 167 |||||||||||||||||||| Sbjct: 132164 catcctcagcaccccaaaat 132183
>gb|BC000099.2| Homo sapiens ribosome binding protein 1 homolog 180kDa (dog), mRNA (cDNA clone IMAGE:3509994), partial cds Length = 2069 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 gaagagcgtggaggaggagg 568 |||||||||||||||||||| Sbjct: 1174 gaagagcgtggaggaggagg 1193
>ref|XM_535195.2| PREDICTED: Canis familiaris similar to inter-alpha globulin inhibitor H2 polypeptide (LOC478011), mRNA Length = 2941 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tggtctggatgatggtgttg 249 |||||||||||||||||||| Sbjct: 377 tggtctggatgatggtgttg 358
>gb|BC080526.1| Homo sapiens ribosome binding protein 1 homolog 180kDa (dog), mRNA (cDNA clone IMAGE:4561660) Length = 1951 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 gaagagcgtggaggaggagg 568 |||||||||||||||||||| Sbjct: 1300 gaagagcgtggaggaggagg 1319
>emb|AL139016.8| Human DNA sequence from clone RP4-658C17 on chromosome 1p11.1-13.3, complete sequence Length = 100643 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 gaagagcgtggaggaggagg 568 |||||||||||||||||||| Sbjct: 28378 gaagagcgtggaggaggagg 28397
>emb|AL132765.38|HSA462D18 Human DNA sequence from clone RP11-462D18 on chromosome 20 Contains the 5' end of the BFSP1 gene for beaded filament structural protein 1 (filensin), the DSTN gene for destrin (actin depolymerizing factor ADF), a ras-like pseudogene, the RRBP1 gene for ribosome binding protein 1 (dog 180 kDa homolog), the 5' end of the C20orf179 gene for chromosome 20 open reading frame 179 and two CpG islands, complete sequence Length = 166001 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 gaagagcgtggaggaggagg 568 |||||||||||||||||||| Sbjct: 67140 gaagagcgtggaggaggagg 67121
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 605 gcgcgttcagcagccccgcc 624 |||||||||||||||||||| Sbjct: 338268 gcgcgttcagcagccccgcc 338249
>emb|AL833822.1|HSM805097 Homo sapiens mRNA; cDNA DKFZp586A1420 (from clone DKFZp586A1420) Length = 2400 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 gaagagcgtggaggaggagg 568 |||||||||||||||||||| Sbjct: 2204 gaagagcgtggaggaggagg 2223
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ggtctggatgatggtgttgt 250 |||||||||||||||||||| Sbjct: 172999 ggtctggatgatggtgttgt 172980
>gb|AF448525.1| Mytilus galloprovincialis precollagen-P mRNA, complete cds Length = 2781 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 caccaggaaccccaggaacgccag 338 ||||||||||||||||||| |||| Sbjct: 1066 caccaggaaccccaggaacaccag 1089
>emb|BX469902.7| Zebrafish DNA sequence from clone CH211-277G23 in linkage group 9, complete sequence Length = 179135 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 caccccaaaataataattca 176 |||||||||||||||||||| Sbjct: 16903 caccccaaaataataattca 16922
>ref|NM_004587.1| Homo sapiens ribosome binding protein 1 homolog 180kDa (dog) (RRBP1), mRNA Length = 3106 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 gaagagcgtggaggaggagg 568 |||||||||||||||||||| Sbjct: 2209 gaagagcgtggaggaggagg 2228
>dbj|AK093465.1| Homo sapiens cDNA FLJ36146 fis, clone TESTI2025117, highly similar to Homo sapiens ES/130 mRNA Length = 1648 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 gaagagcgtggaggaggagg 568 |||||||||||||||||||| Sbjct: 774 gaagagcgtggaggaggagg 793
>dbj|AB189167.1| Oryza sativa (japonica cultivar-group) OsIDHa mRNA for NAD-dependent isocitrate dehydrogenase a, complete cds Length = 1424 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 224 cggagatggtctggatgatggtgttgtg 251 ||||||||||||||| ||||| |||||| Sbjct: 1135 cggagatggtctggaggatggcgttgtg 1108
>gb|S68728.1| LHC Ib-21=light-harvesting complex I [Hordeum vulgare=barley, Prato, mRNA Chloroplast, 878 nt] Length = 878 Score = 40.1 bits (20), Expect = 8.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 321 gaaccccaggaacgccagcatggccagtctcccgtt 356 |||||||| |||||||||||| ||||| | |||||| Sbjct: 543 gaaccccacgaacgccagcatcgccagccgcccgtt 508
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 tcggccaggtgctgctgcag 278 |||||||||||||||||||| Sbjct: 665703 tcggccaggtgctgctgcag 665722
>ref|XM_393975.2| PREDICTED: Apis mellifera hypothetical LOC410496 (LOC410496), mRNA Length = 4959 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 550 aagagcgtggaggaggaggcgaag 573 ||||||||||||||||||| |||| Sbjct: 1318 aagagcgtggaggaggaggagaag 1341
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 224 cggagatggtctggatgatggtgttgtg 251 ||||||||||||||| ||||| |||||| Sbjct: 9668714 cggagatggtctggaggatggcgttgtg 9668687
>gb|AC097525.3| Homo sapiens BAC clone RP11-627E8 from 2, complete sequence Length = 55514 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 catgggtgatattacaagta 35 |||||||||||||||||||| Sbjct: 11077 catgggtgatattacaagta 11096
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0038F12 Length = 190014 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 224 cggagatggtctggatgatggtgttgtg 251 ||||||||||||||| ||||| |||||| Sbjct: 106717 cggagatggtctggaggatggcgttgtg 106690
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 ccggagatggtctggatgatggtg 246 ||||||||||||||||||| |||| Sbjct: 5018847 ccggagatggtctggatgagggtg 5018824
>dbj|AB122118.1| Chlamydomonas reinhardtii LhcI-5 gene for light-harvesting chlorophyll-a/b protein of photosystem I, complete cds Length = 1886 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 458 tgaagatggggtcctggttgacggagcc 485 |||||||||||||||||| |||||||| Sbjct: 1085 tgaagatggggtcctggtccacggagcc 1058
>gb|AF218305.1|AF218305 Hordeum vulgare chlorophyll a/b binding protein precursor (lhca1) mRNA, complete cds; nuclear gene for chloroplast product Length = 784 Score = 40.1 bits (20), Expect = 8.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 321 gaaccccaggaacgccagcatggccagtctcccgtt 356 |||||||| |||||||||||| ||||| | |||||| Sbjct: 661 gaaccccacgaacgccagcatcgccagccgcccgtt 626
>dbj|AK059596.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D11, full insert sequence Length = 1522 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 224 cggagatggtctggatgatggtgttgtg 251 ||||||||||||||| ||||| |||||| Sbjct: 1149 cggagatggtctggaggatggcgttgtg 1122
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 533 ggatgaactcgatgacgaagagcg 556 |||||| ||||||||||||||||| Sbjct: 4362343 ggatgacctcgatgacgaagagcg 4362320
>gb|AF082100.1|AF082100 Streptomyces sp. MA6548 FK506 peptide synthetase (fkbP), FK506 oxidase (fkbO), and FK506 polyketide synthase (fkbB) genes, complete cds Length = 28732 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 ggtcggccaggtgctgctgcaggt 280 ||||| |||||||||||||||||| Sbjct: 3454 ggtcgtccaggtgctgctgcaggt 3431
>gb|AF006751.1|AF006751 Homo sapiens ES/130 mRNA, complete cds Length = 3106 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 gaagagcgtggaggaggagg 568 |||||||||||||||||||| Sbjct: 2209 gaagagcgtggaggaggagg 2228
>gb|M19529.1|PIGFSA Pig follistatin (FS) gene, complete cds Length = 6247 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 552 gagcgtggaggaggaggcga 571 |||||||||||||||||||| Sbjct: 2650 gagcgtggaggaggaggcga 2631
>dbj|AB037819.2| Homo sapiens mRNA for KIAA1398 protein, partial cds Length = 5468 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 gaagagcgtggaggaggagg 568 |||||||||||||||||||| Sbjct: 4172 gaagagcgtggaggaggagg 4191 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,776,974 Number of Sequences: 3902068 Number of extensions: 5776974 Number of successful extensions: 104068 Number of sequences better than 10.0: 98 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103175 Number of HSP's gapped (non-prelim): 883 length of query: 640 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 617 effective length of database: 17,143,297,704 effective search space: 10577414683368 effective search space used: 10577414683368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
