ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10k22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HHEX_MOUSE (P43120) Homeobox protein PRH (Hematopoietically expr... 32 0.37
2HHEX_HUMAN (Q03014) Homeobox protein PRH (Hematopoietically expr... 30 1.1
3PICO_DROME (Q9V7S5) Putative inorganic phosphate cotransporter 29 2.4
4KCRU_MOUSE (P30275) Creatine kinase, ubiquitous mitochondrial pr... 28 5.4
5PSAA_OENHO (Q9MTN8) Photosystem I P700 chlorophyll a apoprotein ... 27 9.1

>HHEX_MOUSE (P43120) Homeobox protein PRH (Hematopoietically expressed|
           homeobox) (Homeobox protein HEX)
          Length = 271

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 239 NNGFKHLITGFRTWVHQDPSCHPTLSPKADQALTGSLGKSACSG--YPSP 382
           N+ F  L++ +RT V++    HP  S     AL  + G S   G  YP P
Sbjct: 56  NSSFTSLVSSYRTPVYEPTPVHPAFSHHPAAALAAAYGPSGFGGPLYPFP 105



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>HHEX_HUMAN (Q03014) Homeobox protein PRH (Hematopoietically expressed|
           homeobox) (Homeobox protein HEX)
          Length = 270

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 239 NNGFKHLITGFRTWVHQDPSCHPTLSPKADQALTGSLGKSACSG--YPSP 382
           N+ F  L++ +RT V++    HP  S  +  AL  + G     G  YP P
Sbjct: 55  NSSFTSLVSPYRTPVYEPTPIHPAFSHHSAAALAAAYGPGGFGGPLYPFP 104



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>PICO_DROME (Q9V7S5) Putative inorganic phosphate cotransporter|
          Length = 529

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 269 FRTWVHQDPSCHPTLSPKADQALTGSL-GKSACSGYPSP 382
           F  +VH+DPS HPT+  +  + +  SL G       P P
Sbjct: 248 FLIFVHEDPSSHPTIDEREKKYINDSLWGTDVVKSPPIP 286



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>KCRU_MOUSE (P30275) Creatine kinase, ubiquitous mitochondrial precursor (EC|
           2.7.3.2) (U-MtCK) (Mia-CK) (Acidic-type mitochondrial
           creatine kinase)
          Length = 418

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 355 LPQRPGQRLVSLG*EGGMTRGVLMDPST 272
           L  RPG RL++L   G +T G+L+ P +
Sbjct: 9   LSARPGLRLLALAGAGSLTAGILLRPES 36



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>PSAA_OENHO (Q9MTN8) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)|
           (PSI-A)
          Length = 751

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 23/114 (20%), Positives = 42/114 (36%)
 Frame = +2

Query: 2   SEXQQXICTYINSXSXKTRSIWLHLPVQIIHFPQREQVKPSY*NKIKWEYRSWSITNHEL 181
           S   Q + T+I   +    SI ++  ++   + Q  QV  SY +         S++ + L
Sbjct: 619 SISDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQVIQSYGS---------SLSAYGL 669

Query: 182 LYLHKHYTHR*EQTYF*DCNNGFKHLITGFRTWVHQDPSCHPTLSPKADQALTG 343
            +L  H+       +   C  G+   +     W H      P   P+A   + G
Sbjct: 670 FFLGAHFVWAFSLMFLFSCGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQG 723


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,601,416
Number of Sequences: 219361
Number of extensions: 1061338
Number of successful extensions: 2575
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2575
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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