| Clone Name | rbaal10k11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ495771.1|HVU495771 Hordeum vulgare partial mRNA for putative thioredoxin reductase Length = 642 Score = 747 bits (377), Expect = 0.0 Identities = 421/445 (94%) Strand = Plus / Minus Query: 82 ggggtcancaagatgttatattgtccaacaaagaatatatttnggattcaataagggcga 141 ||||||| ||||||||||| |||| |||||||| |||||||| |||||||||||||||| Sbjct: 617 ggggtcaacaagatgttatwttgtacaacaaagratatattttggattcaataagggcgr 558 Query: 142 tcggttaatttcctatggcntgactgcnccaggctcatntganaatttgaccaaaaatng 201 ||||||||||||||||||| ||||||| ||||| |||| || ||||||||||||||| | Sbjct: 557 tcggttaatttcctatggcatgactgcaccaggstcatctgrgaatttgaccaaaaattg 498 Query: 202 cccaccagcgnggcttctaaatntagncaatatatgtgtnaatggaggccattacacttc 261 ||||||| || ||||||||||| ||| |||||||||||| |||||||||||||||||||| Sbjct: 497 cccaccascgtggcttctaaatataghcaatatatgtgtaaatggaggccattacacttc 438 Query: 262 aaaaccctgggacaaacaatgagctcagatcatttgttcgactcaatgaattcccggtat 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 437 aaaaccctgggacaaacaatgagctcagatcatttgttcgactcaatgaattcccggtat 378 Query: 322 tccttcttcatcttcacaccaaanaaagncctgatcatttctttgtttttaaagaactga 381 ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| Sbjct: 377 tccttcttcatcttcacaccagagaaagtcctgatcatttctttgtttttaaagaactga 318 Query: 382 acacaaggtgttcccatgatgcctgcagcttctgctntttcagggncctnttcaatgtca 441 |||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| Sbjct: 317 acacaaggtgttcccatgatgcctgcagcttctgctatttcagggtcctcttcaatgtca 258 Query: 442 atttcaacaaaatgaacgtattcgtcatactcatctataaccttgttcaaaattggtttt 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 257 atttcaacaaaatgaacgtattcgtcatactcatctataaccttgttcaaaattggtttt 198 Query: 502 aatgttctgcagggaccacatgttg 526 ||||||||||||||||||||||||| Sbjct: 197 aatgttctgcagggaccacatgttg 173
>emb|AJ582621.1|OSA582621 Oryza sativa (japonica cultivar-group) mRNA for NADPH thioredoxin reductase (NtrC gene) Length = 1684 Score = 218 bits (110), Expect = 1e-53 Identities = 207/241 (85%) Strand = Plus / Minus Query: 286 tcagatcatttgttcgactcaatgaattcccggtattccttcttcatcttcacaccaaan 345 |||| ||||||||| ||||| || || |||| |||||||||||||| || |||||| | Sbjct: 1528 tcagctcatttgtttgactcgataaactccctatattccttcttcattttaacaccagag 1469 Query: 346 aaagncctgatcatttctttgtttttaaagaactgaacacaaggtgttcccatgatgcct 405 | || ||||| ||||||||| |||||||| || |||||||| |||||||||||||||||| Sbjct: 1468 acagtcctgagcatttctttatttttaaaaaattgaacacatggtgttcccatgatgcct 1409 Query: 406 gcagcttctgctntttcagggncctnttcaatgtcaatttcaacaaaatgaacgtattcg 465 |||||||||||| ||||||| ||| || ||||||||||| ||||||||||||| |||| Sbjct: 1408 gcagcttctgctatttcaggatcctcctcgatgtcaatttcgacaaaatgaacgtgttcg 1349 Query: 466 tcatactcatctataaccttgttcaaaattggttttaatgttctgcagggaccacatgtt 525 | |||||||||||||||||| | | |||||| ||||| |||||||| |||||||||||| Sbjct: 1348 ttgtactcatctataaccttgcttagaattggctttaaggttctgcaaggaccacatgtt 1289 Query: 526 g 526 | Sbjct: 1288 g 1288
>dbj|AK068311.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151L11, full insert sequence Length = 1847 Score = 218 bits (110), Expect = 1e-53 Identities = 207/241 (85%) Strand = Plus / Minus Query: 286 tcagatcatttgttcgactcaatgaattcccggtattccttcttcatcttcacaccaaan 345 |||| ||||||||| ||||| || || |||| |||||||||||||| || |||||| | Sbjct: 1578 tcagctcatttgtttgactcgataaactccctatattccttcttcattttaacaccagag 1519 Query: 346 aaagncctgatcatttctttgtttttaaagaactgaacacaaggtgttcccatgatgcct 405 | || ||||| ||||||||| |||||||| || |||||||| |||||||||||||||||| Sbjct: 1518 acagtcctgagcatttctttatttttaaaaaattgaacacatggtgttcccatgatgcct 1459 Query: 406 gcagcttctgctntttcagggncctnttcaatgtcaatttcaacaaaatgaacgtattcg 465 |||||||||||| ||||||| ||| || ||||||||||| ||||||||||||| |||| Sbjct: 1458 gcagcttctgctatttcaggatcctcctcgatgtcaatttcgacaaaatgaacgtgttcg 1399 Query: 466 tcatactcatctataaccttgttcaaaattggttttaatgttctgcagggaccacatgtt 525 | |||||||||||||||||| | | |||||| ||||| |||||||| |||||||||||| Sbjct: 1398 ttgtactcatctataaccttgcttagaattggctttaaggttctgcaaggaccacatgtt 1339 Query: 526 g 526 | Sbjct: 1338 g 1338
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 153 bits (77), Expect = 7e-34 Identities = 119/134 (88%) Strand = Plus / Minus Query: 351 cctgatcatttctttgtttttaaagaactgaacacaaggtgttcccatgatgcctgcagc 410 ||||| ||||||||| |||||||| || |||||||| ||||||||||||||||||||||| Sbjct: 27645126 cctgagcatttctttatttttaaaaaattgaacacatggtgttcccatgatgcctgcagc 27645067 Query: 411 ttctgctntttcagggncctnttcaatgtcaatttcaacaaaatgaacgtattcgtcata 470 ||||||| ||||||| ||| || ||||||||||| ||||||||||||| ||||| || Sbjct: 27645066 ttctgctatttcaggatcctcctcgatgtcaatttcgacaaaatgaacgtgttcgttgta 27645007 Query: 471 ctcatctataacct 484 |||||||||||||| Sbjct: 27645006 ctcatctataacct 27644993 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 492 aattggttttaatgttctgcagggaccacatgttg 526 |||||| ||||| |||||||| ||||||||||||| Sbjct: 27644543 aattggctttaaggttctgcaaggaccacatgttg 27644509 Score = 42.1 bits (21), Expect = 1.8 Identities = 48/57 (84%) Strand = Plus / Minus Query: 286 tcagatcatttgttcgactcaatgaattcccggtattccttcttcatcttcacacca 342 |||| ||||||||| ||||| || || |||| |||||||||||||| || |||||| Sbjct: 27645314 tcagctcatttgtttgactcgataaactccctatattccttcttcattttaacacca 27645258
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 153 bits (77), Expect = 7e-34 Identities = 119/134 (88%) Strand = Plus / Minus Query: 351 cctgatcatttctttgtttttaaagaactgaacacaaggtgttcccatgatgcctgcagc 410 ||||| ||||||||| |||||||| || |||||||| ||||||||||||||||||||||| Sbjct: 102119 cctgagcatttctttatttttaaaaaattgaacacatggtgttcccatgatgcctgcagc 102060 Query: 411 ttctgctntttcagggncctnttcaatgtcaatttcaacaaaatgaacgtattcgtcata 470 ||||||| ||||||| ||| || ||||||||||| ||||||||||||| ||||| || Sbjct: 102059 ttctgctatttcaggatcctcctcgatgtcaatttcgacaaaatgaacgtgttcgttgta 102000 Query: 471 ctcatctataacct 484 |||||||||||||| Sbjct: 101999 ctcatctataacct 101986 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 492 aattggttttaatgttctgcagggaccacatgttg 526 |||||| ||||| |||||||| ||||||||||||| Sbjct: 101536 aattggctttaaggttctgcaaggaccacatgttg 101502 Score = 42.1 bits (21), Expect = 1.8 Identities = 48/57 (84%) Strand = Plus / Minus Query: 286 tcagatcatttgttcgactcaatgaattcccggtattccttcttcatcttcacacca 342 |||| ||||||||| ||||| || || |||| |||||||||||||| || |||||| Sbjct: 102307 tcagctcatttgtttgactcgataaactccctatattccttcttcattttaacacca 102251
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1477_F01 Length = 158792 Score = 153 bits (77), Expect = 7e-34 Identities = 119/134 (88%) Strand = Plus / Minus Query: 351 cctgatcatttctttgtttttaaagaactgaacacaaggtgttcccatgatgcctgcagc 410 ||||| ||||||||| |||||||| || |||||||| ||||||||||||||||||||||| Sbjct: 24228 cctgagcatttctttatttttaaaaaattgaacacatggtgttcccatgatgcctgcagc 24169 Query: 411 ttctgctntttcagggncctnttcaatgtcaatttcaacaaaatgaacgtattcgtcata 470 ||||||| ||||||| ||| || ||||||||||| ||||||||||||| ||||| || Sbjct: 24168 ttctgctatttcaggatcctcctcgatgtcaatttcgacaaaatgaacgtgttcgttgta 24109 Query: 471 ctcatctataacct 484 |||||||||||||| Sbjct: 24108 ctcatctataacct 24095 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 492 aattggttttaatgttctgcagggaccacatgttg 526 |||||| ||||| |||||||| ||||||||||||| Sbjct: 23645 aattggctttaaggttctgcaaggaccacatgttg 23611 Score = 42.1 bits (21), Expect = 1.8 Identities = 48/57 (84%) Strand = Plus / Minus Query: 286 tcagatcatttgttcgactcaatgaattcccggtattccttcttcatcttcacacca 342 |||| ||||||||| ||||| || || |||| |||||||||||||| || |||||| Sbjct: 24416 tcagctcatttgtttgactcgataaactccctatattccttcttcattttaacacca 24360
>ref|NM_129731.3| Arabidopsis thaliana disulfide oxidoreductase/ electron transporter/ oxidoreductase/ thioredoxin-disulfide reductase AT2G41680 mRNA, complete cds Length = 1800 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/96 (84%) Strand = Plus / Minus Query: 303 ctcaatgaattcccggtattccttcttcatcttcacaccaaanaaagncctgatcatttc 362 |||||||||||| ||||| || ||||||||||||||||| | | || ||||| |||||| Sbjct: 1594 ctcaatgaattctcggtactctttcttcatcttcacacccgatatagtcctgagcatttc 1535 Query: 363 tttgtttttaaagaactgaacacaaggtgttcccat 398 ||||| || |||||||| ||||| || |||||||| Sbjct: 1534 cttgttcttgaagaactgcacacatggggttcccat 1499
>gb|BT000516.1| Arabidopsis thaliana putative thioredoxin reductase (At2g41680/T32G6.20) mRNA, complete cds Length = 1590 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/96 (84%) Strand = Plus / Minus Query: 303 ctcaatgaattcccggtattccttcttcatcttcacaccaaanaaagncctgatcatttc 362 |||||||||||| ||||| || ||||||||||||||||| | | || ||||| |||||| Sbjct: 1578 ctcaatgaattctcggtactctttcttcatcttcacacccgatatagtcctgagcatttc 1519 Query: 363 tttgtttttaaagaactgaacacaaggtgttcccat 398 ||||| || |||||||| ||||| || |||||||| Sbjct: 1518 cttgttcttgaagaactgcacacatggggttcccat 1483
>gb|AY093250.1| Arabidopsis thaliana putative thioredoxin reductase (At2g41680) mRNA, complete cds Length = 803 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/96 (84%) Strand = Plus / Minus Query: 303 ctcaatgaattcccggtattccttcttcatcttcacaccaaanaaagncctgatcatttc 362 |||||||||||| ||||| || ||||||||||||||||| | | || ||||| |||||| Sbjct: 684 ctcaatgaattctcggtactctttcttcatcttcacacccgatatagtcctgagcatttc 625 Query: 363 tttgtttttaaagaactgaacacaaggtgttcccat 398 ||||| || |||||||| ||||| || |||||||| Sbjct: 624 cttgttcttgaagaactgcacacatggggttcccat 589
>gb|AY062479.1| Arabidopsis thaliana putative thioredoxin reductase (At2g41680; T32G6.20) mRNA, complete cds Length = 1802 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/96 (84%) Strand = Plus / Minus Query: 303 ctcaatgaattcccggtattccttcttcatcttcacaccaaanaaagncctgatcatttc 362 |||||||||||| ||||| || ||||||||||||||||| | | || ||||| |||||| Sbjct: 1611 ctcaatgaattctcggtactctttcttcatcttcacacccgatatagtcctgagcatttc 1552 Query: 363 tttgtttttaaagaactgaacacaaggtgttcccat 398 ||||| || |||||||| ||||| || |||||||| Sbjct: 1551 cttgttcttgaagaactgcacacatggggttcccat 1516
>gb|AY056394.1| Arabidopsis thaliana At2g41680/T32G6.20 mRNA, complete cds Length = 1783 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/96 (84%) Strand = Plus / Minus Query: 303 ctcaatgaattcccggtattccttcttcatcttcacaccaaanaaagncctgatcatttc 362 |||||||||||| ||||| || ||||||||||||||||| | | || ||||| |||||| Sbjct: 1591 ctcaatgaattctcggtactctttcttcatcttcacacccgatatagtcctgagcatttc 1532 Query: 363 tttgtttttaaagaactgaacacaaggtgttcccat 398 ||||| || |||||||| ||||| || |||||||| Sbjct: 1531 cttgttcttgaagaactgcacacatggggttcccat 1496
>emb|BX821094.1|CNS0A9Z3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL14ZD09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 644 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/96 (84%) Strand = Plus / Minus Query: 303 ctcaatgaattcccggtattccttcttcatcttcacaccaaanaaagncctgatcatttc 362 |||||||||||| ||||| || ||||||||||||||||| | | || ||||| |||||| Sbjct: 465 ctcaatgaattctcggtactctttcttcatcttcacacccgatatagtcctgagcatttc 406 Query: 363 tttgtttttaaagaactgaacacaaggtgttcccat 398 ||||| || |||||||| ||||| || |||||||| Sbjct: 405 cttgttcttgaagaactgcacacatggggttcccat 370
>emb|BX820757.1|CNS0A9JK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH67ZD05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1726 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/96 (84%) Strand = Plus / Minus Query: 303 ctcaatgaattcccggtattccttcttcatcttcacaccaaanaaagncctgatcatttc 362 |||||||||||| ||||| || ||||||||||||||||| | | || ||||| |||||| Sbjct: 1584 ctcaatgaattctcggtactctttcttcatcttcacacccgatatagtcctgagcatttc 1525 Query: 363 tttgtttttaaagaactgaacacaaggtgttcccat 398 ||||| || |||||||| ||||| || |||||||| Sbjct: 1524 cttgttcttgaagaactgcacacatggggttcccat 1489
>emb|BX819883.1|CNS0A9GU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS42ZF11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1356 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/96 (84%) Strand = Plus / Minus Query: 303 ctcaatgaattcccggtattccttcttcatcttcacaccaaanaaagncctgatcatttc 362 |||||||||||| ||||| || ||||||||||||||||| | | || ||||| |||||| Sbjct: 1221 ctcaatgaattctcggtactctttcttcatcttcacacccgatatagtcctgagcatttc 1162 Query: 363 tttgtttttaaagaactgaacacaaggtgttcccat 398 ||||| || |||||||| ||||| || |||||||| Sbjct: 1161 cttgttcttgaagaactgcacacatggggttcccat 1126
>gb|AC002510.3| Arabidopsis thaliana chromosome 2 clone T32G6 map CIC11C08, complete sequence Length = 91979 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 303 ctcaatgaattcccggtattccttcttcatcttcacacc 341 |||||||||||| ||||| || ||||||||||||||||| Sbjct: 77252 ctcaatgaattctcggtactctttcttcatcttcacacc 77290
>emb|BX820128.1|CNS0A9G2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS78ZB05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1730 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 303 ctcaatgaattcccggtattccttcttcatcttcacacc 341 |||||||||||| ||||| || ||||||||||||||||| Sbjct: 1595 ctcaatgaattctcggtactctttcttcatcttcacacc 1557
>emb|CR387978.12| Zebrafish DNA sequence from clone DKEY-33M5 in linkage group 1, complete sequence Length = 208746 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 359 tttctttgtttttaaagaactg 380 |||||||||||||||||||||| Sbjct: 155160 tttctttgtttttaaagaactg 155139
>emb|BX470266.10| Zebrafish DNA sequence from clone DKEYP-9D4 in linkage group 1, complete sequence Length = 194021 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 359 tttctttgtttttaaagaactg 380 |||||||||||||||||||||| Sbjct: 80207 tttctttgtttttaaagaactg 80186
>emb|AL772135.14| Mouse DNA sequence from clone RP23-162G11 on chromosome 2, complete sequence Length = 230161 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 275 aaacaatgagctcagatcattt 296 |||||||||||||||||||||| Sbjct: 157506 aaacaatgagctcagatcattt 157485
>gb|AC148990.6| Mus musculus BAC clone RP24-466N11 from chromosome 7, complete sequence Length = 198504 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 catttctttgtttttaaagaa 377 ||||||||||||||||||||| Sbjct: 35006 catttctttgtttttaaagaa 34986
>gb|AC134530.3| Mus musculus BAC clone RP24-507K16 from chromosome 5, complete sequence Length = 215112 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 catttctttgtttttaaagaa 377 ||||||||||||||||||||| Sbjct: 169343 catttctttgtttttaaagaa 169363
>gb|AC121356.10| Mus musculus chromosome 6, clone RP23-52D17, complete sequence Length = 178055 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 catttctttgtttttaaagaa 377 ||||||||||||||||||||| Sbjct: 122727 catttctttgtttttaaagaa 122707
>gb|AC132272.3| Mus musculus BAC clone RP24-339P23 from chromosome 16, complete sequence Length = 147166 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 catttctttgtttttaaagaa 377 ||||||||||||||||||||| Sbjct: 74806 catttctttgtttttaaagaa 74826
>emb|AL139101.13| Human DNA sequence from clone RP3-414L4 on chromosome 6 Contains the 3' end of the TIAM2 gene for T-cell lymphoma invasion and metastasis 2 (SIF and Tiam 1-like exchange factor (STEF)), the CLDN20 gene for claudin 20, the TFB1M gene for transcription factor B1, mitochondrial (CGI-75 protein homolog of yeast mitochondrial transcription factor BCGI75 (mtTFB, CGI-75)), the 5' end of a novel gene and two CpG islands, complete sequence Length = 116256 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 251 cattacacttcaaaaccctgg 271 ||||||||||||||||||||| Sbjct: 45642 cattacacttcaaaaccctgg 45662
>gb|AC159199.3| Mus musculus BAC clone RP23-401H23 from chromosome 16, complete sequence Length = 218059 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 catttctttgtttttaaagaa 377 ||||||||||||||||||||| Sbjct: 48963 catttctttgtttttaaagaa 48983
>gb|AC159823.2| Mus musculus BAC clone RP23-113F14 from chromosome 12, complete sequence Length = 212532 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 catttctttgtttttaaagaa 377 ||||||||||||||||||||| Sbjct: 126137 catttctttgtttttaaagaa 126157
>gb|AC151897.3| Mus musculus BAC clone RP24-257D11 from chromosome 7, complete sequence Length = 222313 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 catttctttgtttttaaagaa 377 ||||||||||||||||||||| Sbjct: 53521 catttctttgtttttaaagaa 53541
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 355 atcatttctttgtttttaaag 375 ||||||||||||||||||||| Sbjct: 1919040 atcatttctttgtttttaaag 1919060
>gb|AC150035.3| Mus musculus BAC clone RP23-348A6 from 16, complete sequence Length = 188444 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 catttctttgtttttaaagaa 377 ||||||||||||||||||||| Sbjct: 128378 catttctttgtttttaaagaa 128398
>emb|AL772292.10| Mouse DNA sequence from clone RP23-109C16 on chromosome 2, complete sequence Length = 201671 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 atttctttgtttttaaagaac 378 ||||||||||||||||||||| Sbjct: 133191 atttctttgtttttaaagaac 133211
>gb|AC118628.11| Mus musculus chromosome 19, clone RP24-92P15, complete sequence Length = 202071 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 atttctttgtttttaaagaa 377 |||||||||||||||||||| Sbjct: 61722 atttctttgtttttaaagaa 61741
>gb|AC148991.2| Mus musculus BAC clone RP23-52N2 from chromosome 19, complete sequence Length = 221043 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 atttctttgtttttaaagaa 377 |||||||||||||||||||| Sbjct: 166947 atttctttgtttttaaagaa 166966
>gb|AC166290.7| Mus musculus BAC RP23-14P17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 242055 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 atttctttgtttttaaagaa 377 |||||||||||||||||||| Sbjct: 132808 atttctttgtttttaaagaa 132827
>gb|AC132402.3| Mus musculus BAC clone RP23-404I24 from chromosome 19, complete sequence Length = 217490 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 atttctttgtttttaaagaa 377 |||||||||||||||||||| Sbjct: 53804 atttctttgtttttaaagaa 53823
>emb|CR627484.12| Zebrafish DNA sequence from clone CH211-281M7 in linkage group 16, complete sequence Length = 152450 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 cttgttcaaaattggtttta 502 |||||||||||||||||||| Sbjct: 72407 cttgttcaaaattggtttta 72426
>gb|AC122827.3| Mus musculus BAC clone RP23-211N23 from chromosome 18, complete sequence Length = 194843 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 catttctttgtttttaaaga 376 |||||||||||||||||||| Sbjct: 174995 catttctttgtttttaaaga 175014
>emb|CR956382.7| Pig DNA sequence from clone CH242-231E9 on chromosome 6, complete sequence Length = 186091 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 ctttgtttttaaagaactga 381 |||||||||||||||||||| Sbjct: 55211 ctttgtttttaaagaactga 55192
>gb|AC118681.6| Mus musculus chromosome 16, clone RP23-473M11, complete sequence Length = 279112 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 atttctttgtttttaaagaa 377 |||||||||||||||||||| Sbjct: 54170 atttctttgtttttaaagaa 54151
>ref|XM_720110.1| Plasmodium yoelii yoelii str. 17XNL 26S proteasome ATPase (PY00544) partial mRNA Length = 1911 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 tctataaccttgttcaaaat 494 |||||||||||||||||||| Sbjct: 1863 tctataaccttgttcaaaat 1844
>ref|XM_736359.1| Plasmodium chabaudi chabaudi hypothetical protein (PC302617.00.0) partial mRNA Length = 309 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 tctataaccttgttcaaaat 494 |||||||||||||||||||| Sbjct: 261 tctataaccttgttcaaaat 242
>gb|U70857.2| Caenorhabditis elegans cosmid C10G8, complete sequence Length = 30826 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 432 ttcaatgtcaatttcaacaaaatg 455 ||||||||||||||||| |||||| Sbjct: 24196 ttcaatgtcaatttcaataaaatg 24173
>gb|AC147434.12| Medicago truncatula clone mth2-28h7, complete sequence Length = 127300 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 cttcttcatcttcacaccaa 343 |||||||||||||||||||| Sbjct: 30677 cttcttcatcttcacaccaa 30658
>ref|XM_791044.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC591484 (LOC591484), mRNA Length = 702 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 ttccttcttcatcttcacaccaaa 344 |||||||| ||||||||||||||| Sbjct: 369 ttccttctgcatcttcacaccaaa 392
>emb|AL109809.18|HSJ673D20 Human DNA sequence from clone RP4-673D20 on chromosome 20 Contains a PTPNS (protein tyrosine phosphatase, non-receptor type substrate) family pseudogene, the 5' end of the SIRPB2 gene for signal-regulatory protein beta 2 and a CpG island, complete sequence Length = 132396 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 tttgtttttaaagaactgaa 382 |||||||||||||||||||| Sbjct: 17164 tttgtttttaaagaactgaa 17145
>emb|CR627485.10| Zebrafish DNA sequence from clone DKEY-203E10 in linkage group 7, complete sequence Length = 180774 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 tttctttgtttttaaagaac 378 |||||||||||||||||||| Sbjct: 162287 tttctttgtttttaaagaac 162306
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tcaacaaaatgaacgtattc 464 |||||||||||||||||||| Sbjct: 1380559 tcaacaaaatgaacgtattc 1380540
>gb|AC161880.5| Mus musculus BAC clone RP23-261N13 from chromosome 18, complete sequence Length = 204676 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 catttctttgtttttaaaga 376 |||||||||||||||||||| Sbjct: 49426 catttctttgtttttaaaga 49445
>emb|AL671983.18| Mouse DNA sequence from clone RP23-232B3 on chromosome X, complete sequence Length = 176577 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cttcaaaaccctgggacaaa 277 |||||||||||||||||||| Sbjct: 38484 cttcaaaaccctgggacaaa 38465
>gb|AC104819.4| Homo sapiens BAC clone RP11-731D1 from 4, complete sequence Length = 129203 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 tattccttcttcatcttcac 338 |||||||||||||||||||| Sbjct: 101285 tattccttcttcatcttcac 101304
>gb|AC009509.7| Homo sapiens 12p11-37.2-54.4 BAC RP11-1060J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 192690 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 cccatgatgcctgcagcttc 413 |||||||||||||||||||| Sbjct: 114259 cccatgatgcctgcagcttc 114278
>gb|AC105389.3| Homo sapiens BAC clone RP11-227F19 from 4, complete sequence Length = 187067 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 atttctttgtttttaaagaa 377 |||||||||||||||||||| Sbjct: 16181 atttctttgtttttaaagaa 16200
>gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, complete sequence Length = 243771 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 atttctttgtttttaaagaa 377 |||||||||||||||||||| Sbjct: 5460 atttctttgtttttaaagaa 5479
>dbj|AK139136.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730042N09 product:unclassifiable, full insert sequence Length = 2903 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 atttctttgtttttaaagaa 377 |||||||||||||||||||| Sbjct: 1155 atttctttgtttttaaagaa 1174
>gb|AC160059.7| Mus musculus 6 BAC RP23-172L21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 212292 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tgttcccatgatgcctgcag 409 |||||||||||||||||||| Sbjct: 104408 tgttcccatgatgcctgcag 104389
>gb|AC158573.5| Mus musculus chromosome 8, clone RP23-101F17, complete sequence Length = 204567 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 catttctttgtttttaaaga 376 |||||||||||||||||||| Sbjct: 30123 catttctttgtttttaaaga 30142
>gb|AC152959.2| Mus musculus 6 BAC RP23-78B5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206857 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 tgttcccatgatgcctgcag 409 |||||||||||||||||||| Sbjct: 47835 tgttcccatgatgcctgcag 47854
>dbj|AK038447.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230013C15 product:unclassifiable, full insert sequence Length = 3386 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 atttctttgtttttaaagaa 377 |||||||||||||||||||| Sbjct: 3059 atttctttgtttttaaagaa 3078
>gb|AC138951.2| Homo sapiens chromosome 5 clone RP11-823P9, complete sequence Length = 223346 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 cctgatcatttctttgtttt 370 |||||||||||||||||||| Sbjct: 135443 cctgatcatttctttgtttt 135462
>gb|AC138821.2| Homo sapiens chromosome 5 clone RP11-1104E16, complete sequence Length = 182236 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 cctgatcatttctttgtttt 370 |||||||||||||||||||| Sbjct: 689 cctgatcatttctttgtttt 708
>gb|AC093308.4| Homo sapiens chromosome 5 clone RP11-96B3, complete sequence Length = 151635 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 cctgatcatttctttgtttt 370 |||||||||||||||||||| Sbjct: 143175 cctgatcatttctttgtttt 143194
>gb|AC092177.4| Homo sapiens BAC clone RP11-69D8 from 2, complete sequence Length = 100132 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 353 tgatcatttctttgtttttaaaga 376 |||||||||||||||||| ||||| Sbjct: 19630 tgatcatttctttgttttaaaaga 19653
>gb|AC138317.11| Mus musculus chromosome 8, clone RP23-271F20, complete sequence Length = 205957 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 aggtgttcccatgatgcctg 406 |||||||||||||||||||| Sbjct: 171122 aggtgttcccatgatgcctg 171103
>gb|AC113278.15| Mus musculus chromosome 3, clone RP23-387I7, complete sequence Length = 180681 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 tgatcatttctttgttttta 372 |||||||||||||||||||| Sbjct: 121706 tgatcatttctttgttttta 121725
>gb|AC112948.12| Mus musculus chromosome 8, clone RP23-299I18, complete sequence Length = 197546 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 catttctttgtttttaaaga 376 |||||||||||||||||||| Sbjct: 72509 catttctttgtttttaaaga 72490
>gb|AC162949.7| Mus musculus BAC clone RP23-8D10 from chromosome 8, complete sequence Length = 228830 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 tgagctcagatcatttgttc 300 |||||||||||||||||||| Sbjct: 46257 tgagctcagatcatttgttc 46238
>emb|AL772152.16| Mouse DNA sequence from clone RP23-157O1 on chromosome 4, complete sequence Length = 195937 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 atttctttgtttttaaagaa 377 |||||||||||||||||||| Sbjct: 29593 atttctttgtttttaaagaa 29612 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,430,136 Number of Sequences: 3902068 Number of extensions: 4430136 Number of successful extensions: 99442 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99248 Number of HSP's gapped (non-prelim): 186 length of query: 526 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 503 effective length of database: 17,143,297,704 effective search space: 8623078745112 effective search space used: 8623078745112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)