ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IL21R_HUMAN (Q9HBE5) Interleukin-21 receptor precursor (IL-21R) ... 29 3.4
2DDX28_MACFA (Q4R4T6) Probable ATP-dependent RNA helicase DDX28 (... 28 5.8
3RDGC_HAEIN (P44628) Recombination-associated protein rdgC 27 10.0

>IL21R_HUMAN (Q9HBE5) Interleukin-21 receptor precursor (IL-21R) (Novel|
           interleukin receptor)
          Length = 538

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 166 GGWSCPLKNCLMN*KVETSCLVHVPNQHCNALTHVW 59
           GGW CP   C  +      C++ + N H + LT  W
Sbjct: 16  GGWGCPDLVCYTDYLQTVICILEMWNLHPSTLTLTW 51



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>DDX28_MACFA (Q4R4T6) Probable ATP-dependent RNA helicase DDX28 (EC 3.6.1.-)|
           (Mitochondrial DEAD box protein 28)
          Length = 546

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +2

Query: 35  SINQHRRMPHMSQRIAMLIWHMNKTRCFYFLVH*TILQRTAPSSIIT*FCTT 190
           S N H  MPH+ Q    L          + L H    +RT PS  +  FC +
Sbjct: 355 SSNLHCIMPHVKQTFLRLKGADKVAELVHILKHHNRAERTGPSGTVLVFCNS 406



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>RDGC_HAEIN (P44628) Recombination-associated protein rdgC|
          Length = 302

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 199 FNPCGTELCDDGGWSCPLK 143
           F+PCGT+     GWS PL+
Sbjct: 31  FHPCGTQDQSKFGWSAPLR 49


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,940,872
Number of Sequences: 219361
Number of extensions: 650449
Number of successful extensions: 1326
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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