ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10j23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DHB2_RAT (Q62730) Estradiol 17-beta-dehydrogenase 2 (EC 1.1.1.62... 30 5.3
2DECA_DROSI (P91706) Protein decapentaplegic precursor (Protein D... 30 6.9
3OXYR_PIG (P32306) Oxytocin receptor (OT-R) 30 9.1
4OXYR_MACMU (P56494) Oxytocin receptor (OT-R) 30 9.1
5OXYR_RAT (P70536) Oxytocin receptor (OT-R) 30 9.1
6OXYR_MOUSE (P97926) Oxytocin receptor (OT-R) 30 9.1
7OXYR_BOVIN (P56449) Oxytocin receptor (OT-R) 30 9.1

>DHB2_RAT (Q62730) Estradiol 17-beta-dehydrogenase 2 (EC 1.1.1.62)|
           (17-beta-HSD 2) (17-beta-hydroxysteroid dehydrogenase 2)
          Length = 381

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
 Frame = -1

Query: 604 LCICATSAIKPPFLLLVISYFRKHGELVKFY------CFLSVAVLCDVDHITISCQLLFT 443
           LC+ AT+ +    L    S  +   ++V         C LS+++LC +  +++SC  L  
Sbjct: 11  LCLTATAVLGGMLLCKAWSSGQLRSQVVCLAGLWGGACLLSLSLLCSLFLLSVSCFFLLY 70

Query: 442 VVSSDKSAHP 413
           V SSD+   P
Sbjct: 71  VSSSDQDLLP 80



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>DECA_DROSI (P91706) Protein decapentaplegic precursor (Protein DPP-C)|
          Length = 593

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 40  NEHQATSFKEQRLHFKTSLNYRES*HLFASSSTRG*HQLPQKASVFI 180
           N H   + KEQR H K S ++R      AS+ST   HQ     S+F+
Sbjct: 134 NNHNKMAVKEQRSHHKKSHHHRSHQPKQASASTES-HQSSSIESIFV 179



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>OXYR_PIG (P32306) Oxytocin receptor (OT-R)|
          Length = 386

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = -2

Query: 510 VFCQLLFYVM*IILLFPVSCCLLL*VQINQHTHQKHGKYNLDIAILCLLVARFRSQPL-- 337
           V C +LF      L    + C+LL ++  +H H +   +   ++I  L+VA F+  P   
Sbjct: 45  VLCLILF------LALSGNACVLLALRTTRHKHSRLFFFMKHLSIADLVVAVFQVLPQLL 98

Query: 336 --TTLRSLGFERITYMSKYFEVTG 271
              T R  G + +  + KY +V G
Sbjct: 99  WDITFRFYGPDLLCRLVKYLQVVG 122



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>OXYR_MACMU (P56494) Oxytocin receptor (OT-R)|
          Length = 389

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = -2

Query: 510 VFCQLLFYVM*IILLFPVSCCLLL*VQINQHTHQKHGKYNLDIAILCLLVARFRSQPL-- 337
           V C +LF      L    + C+LL ++  +H H +   +   ++I  L+VA F+  P   
Sbjct: 45  VLCLILF------LALSGNACVLLALRTTRHKHSRLFFFMKHLSIADLVVAVFQVLPQLL 98

Query: 336 --TTLRSLGFERITYMSKYFEVTG 271
              T R  G + +  + KY +V G
Sbjct: 99  WDITFRFYGPDLLCRLVKYLQVVG 122



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>OXYR_RAT (P70536) Oxytocin receptor (OT-R)|
          Length = 388

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = -2

Query: 510 VFCQLLFYVM*IILLFPVSCCLLL*VQINQHTHQKHGKYNLDIAILCLLVARFRSQPL-- 337
           V C +LF      L    + C+LL ++  +H H +   +   ++I  L+VA F+  P   
Sbjct: 45  VLCLILF------LALSGNACVLLALRTTRHKHSRLFFFMKHLSIADLVVAVFQVLPQLL 98

Query: 336 --TTLRSLGFERITYMSKYFEVTG 271
              T R  G + +  + KY +V G
Sbjct: 99  WDITFRFYGPDLLCRLVKYLQVVG 122



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>OXYR_MOUSE (P97926) Oxytocin receptor (OT-R)|
          Length = 388

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = -2

Query: 510 VFCQLLFYVM*IILLFPVSCCLLL*VQINQHTHQKHGKYNLDIAILCLLVARFRSQPL-- 337
           V C +LF      L    + C+LL ++  +H H +   +   ++I  L+VA F+  P   
Sbjct: 45  VLCLILF------LALSGNACVLLALRTTRHKHSRLFFFMKHLSIADLVVAVFQVLPQLL 98

Query: 336 --TTLRSLGFERITYMSKYFEVTG 271
              T R  G + +  + KY +V G
Sbjct: 99  WDITFRFYGPDLLCRLVKYLQVVG 122



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>OXYR_BOVIN (P56449) Oxytocin receptor (OT-R)|
          Length = 391

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = -2

Query: 510 VFCQLLFYVM*IILLFPVSCCLLL*VQINQHTHQKHGKYNLDIAILCLLVARFRSQPL-- 337
           V C +LF      L    + C+LL ++  +H H +   +   ++I  L+VA F+  P   
Sbjct: 45  VLCLILF------LALSGNACVLLALRTTRHKHSRLFFFMKHLSIADLVVAVFQVLPQLL 98

Query: 336 --TTLRSLGFERITYMSKYFEVTG 271
              T R  G + +  + KY +V G
Sbjct: 99  WDITFRFYGPDLLCRLVKYLQVVG 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,958,189
Number of Sequences: 219361
Number of extensions: 1620658
Number of successful extensions: 3984
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3984
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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