| Clone Name | rbaal10j06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY377991.1| Triticum aestivum chloroplast-localized Ptr ToxA-binding protein1 (TaThf1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1130 Score = 466 bits (235), Expect = e-128 Identities = 335/363 (92%), Gaps = 6/363 (1%) Strand = Plus / Minus Query: 159 aataatctggnatctttttgtaccgccgagtactacac-cacgctaaggagcagccaaag 217 |||||||||| |||||||||||| || ||||||||||| | ||| ||| ||||||||||| Sbjct: 1014 aataatctgg-atctttttgtacggcggagtactacactcgcgcgaag-agcagccaaag 957 Query: 218 natgcccccgnatagttctcaacgctatccagna-tgtataactgttaatatctgttatc 276 ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 956 -atgcccccg-atagttctcaacgctatccagatgtgtataactgttaatatctgttatc 899 Query: 277 cggacaagctctcctctggggaaaggttgagttaatgcttcaagggataagtgcttccat 336 |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 898 cggacaagctgtcctctggggaaaggttgagttaatgcttcaagggataagcgcttccat 839 Query: 337 cgaattttgcaacagcctcgttcggcttgggcgtctccaatctctctgctctcttcttct 396 ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 838 cgaattttgcaacagcctcattcggcttgggcgtctccaatctctcctctctcttcttct 779 Query: 397 tttccctctcgacgtattccttaagaagttccttggcttgaaccaatttcgacagtaagt 456 |||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 778 tttccctctcgatgtattccttgagaagttccttggcttgaaccaatttcgagagtaagt 719 Query: 457 tgcggtaaacgtcaaggtctctatccacgcnnnnnnnattgatgtttagagcagcgcaaa 516 |||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 718 tgcggtaaacgtcaaggtctctatccacgctctttttattgatgtttagagcagcacaaa 659 Query: 517 gct 519 ||| Sbjct: 658 gct 656
>gb|AY736122.1| Triticum aestivum chloroplast inositol phosphatase-like protein mRNA, complete cds; nuclear gene for chloroplast product Length = 909 Score = 323 bits (163), Expect = 4e-85 Identities = 204/220 (92%) Strand = Plus / Minus Query: 300 aggttgagttaatgcttcaagggataagtgcttccatcgaattttgcaacagcctcgttc 359 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 909 aggttgagttaatgcttcaagggataagcgcttccatcgaattttgcaacagcctcattc 850 Query: 360 ggcttgggcgtctccaatctctctgctctcttcttcttttccctctcgacgtattcctta 419 ||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| Sbjct: 849 ggcttgggcgtctccaatctctcctctctcttcttcttttccctcttgatgtattccttg 790 Query: 420 agaagttccttggcttgaaccaatttcgacagtaagttgcggtaaacgtcaaggtctcta 479 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 789 agaagttccttggcttgaaccaatttcgagagtaagttgcggtaaacgtcaaggtctcta 730 Query: 480 tccacgcnnnnnnnattgatgtttagagcagcgcaaagct 519 ||||||| |||||||||||||||||| ||||||| Sbjct: 729 tccacgctctttttattgatgtttagagcagcacaaagct 690
>ref|XM_478693.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1153 Score = 83.8 bits (42), Expect = 6e-13 Identities = 110/135 (81%) Strand = Plus / Minus Query: 385 ctctcttcttcttttccctctcgacgtattccttaagaagttccttggcttgaaccaatt 444 ||||||||||||||||||| || ||||||||||| ||||||||||| || || ||||||| Sbjct: 886 ctctcttcttcttttccctttccacgtattccttgagaagttccttagcctggaccaatt 827 Query: 445 tcgacagtaagttgcggtaaacgtcaaggtctctatccacgcnnnnnnnattgatgttta 504 | || |||| ||| |||||||| || || || || || || | |||||||||| Sbjct: 826 tggagagtatgttccggtaaacatcgagatccctgtcgacacttcttttgttgatgttta 767 Query: 505 gagcagcgcaaagct 519 ||||||||||||||| Sbjct: 766 gagcagcgcaaagct 752
>gb|AY224446.1| Oryza sativa (japonica cultivar-group) isolate 23045 inositol phosphatase-like protein mRNA, complete cds Length = 864 Score = 83.8 bits (42), Expect = 6e-13 Identities = 110/135 (81%) Strand = Plus / Minus Query: 385 ctctcttcttcttttccctctcgacgtattccttaagaagttccttggcttgaaccaatt 444 ||||||||||||||||||| || ||||||||||| ||||||||||| || || ||||||| Sbjct: 787 ctctcttcttcttttccctttccacgtattccttgagaagttccttagcctggaccaatt 728 Query: 445 tcgacagtaagttgcggtaaacgtcaaggtctctatccacgcnnnnnnnattgatgttta 504 | || |||| ||| |||||||| || || || || || || | |||||||||| Sbjct: 727 tggagagtatgttccggtaaacatcgagatccctgtcgacacttcttttgttgatgttta 668 Query: 505 gagcagcgcaaagct 519 ||||||||||||||| Sbjct: 667 gagcagcgcaaagct 653
>dbj|AK064914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M13, full insert sequence Length = 1152 Score = 83.8 bits (42), Expect = 6e-13 Identities = 110/135 (81%) Strand = Plus / Minus Query: 385 ctctcttcttcttttccctctcgacgtattccttaagaagttccttggcttgaaccaatt 444 ||||||||||||||||||| || ||||||||||| ||||||||||| || || ||||||| Sbjct: 885 ctctcttcttcttttccctttccacgtattccttgagaagttccttagcctggaccaatt 826 Query: 445 tcgacagtaagttgcggtaaacgtcaaggtctctatccacgcnnnnnnnattgatgttta 504 | || |||| ||| |||||||| || || || || || || | |||||||||| Sbjct: 825 tggagagtatgttccggtaaacatcgagatccctgtcgacacttcttttgttgatgttta 766 Query: 505 gagcagcgcaaagct 519 ||||||||||||||| Sbjct: 765 gagcagcgcaaagct 751
>dbj|AK059695.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B12, full insert sequence Length = 1512 Score = 83.8 bits (42), Expect = 6e-13 Identities = 110/135 (81%) Strand = Plus / Minus Query: 385 ctctcttcttcttttccctctcgacgtattccttaagaagttccttggcttgaaccaatt 444 ||||||||||||||||||| || ||||||||||| ||||||||||| || || ||||||| Sbjct: 1121 ctctcttcttcttttccctttccacgtattccttgagaagttccttagcctggaccaatt 1062 Query: 445 tcgacagtaagttgcggtaaacgtcaaggtctctatccacgcnnnnnnnattgatgttta 504 | || |||| ||| |||||||| || || || || || || | |||||||||| Sbjct: 1061 tggagagtatgttccggtaaacatcgagatccctgtcgacacttcctttgttgatgttta 1002 Query: 505 gagcagcgcaaagct 519 ||||||||||||||| Sbjct: 1001 gagcagcgcaaagct 987
>ref|NM_127659.1| Arabidopsis thaliana THF1 AT2G20890 (THF1) mRNA, complete cds Length = 1246 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 389 cttcttcttttccctctcgacgtattccttaagaagttccttggcttg 436 ||||||||| ||||||||||| || |||||||| | |||||||||||| Sbjct: 916 cttcttcttctccctctcgacatactccttaagcaattccttggcttg 869
>gb|AY081596.1| Arabidopsis thaliana unknown protein (At2g20890) mRNA, complete cds Length = 953 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 389 cttcttcttttccctctcgacgtattccttaagaagttccttggcttg 436 ||||||||| ||||||||||| || |||||||| | |||||||||||| Sbjct: 801 cttcttcttctccctctcgacatactccttaagcaattccttggcttg 754
>gb|AY062799.1| Arabidopsis thaliana Unknown protein (At2g20890; F5H14.14) mRNA, complete cds Length = 1143 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 389 cttcttcttttccctctcgacgtattccttaagaagttccttggcttg 436 ||||||||| ||||||||||| || |||||||| | |||||||||||| Sbjct: 911 cttcttcttctccctctcgacatactccttaagcaattccttggcttg 864
>emb|BX818803.1|CNS0A8TL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB15ZB02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 324 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 389 cttcttcttttccctctcgacgtattccttaagaagttccttggcttg 436 ||||||||| ||||||||||| || |||||||| | |||||||||||| Sbjct: 88 cttcttcttctccctctcgacatactccttaagcaattccttggcttg 41
>emb|BX820185.1|CNS0A8J4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS88ZH01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1158 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 389 cttcttcttttccctctcgacgtattccttaagaagttccttggcttg 436 ||||||||| ||||||||||| || |||||||| | |||||||||||| Sbjct: 905 cttcttcttctccctctcgacatactccttaagcaattccttggcttg 858
>emb|BX820020.1|CNS0A8FF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS62ZD04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1131 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 389 cttcttcttttccctctcgacgtattccttaagaagttccttggcttg 436 ||||||||| ||||||||||| || |||||||| | |||||||||||| Sbjct: 877 cttcttcttctccctctcgacatactccttaagcaattccttggcttg 830
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 54.0 bits (27), Expect = 6e-04 Identities = 89/112 (79%) Strand = Plus / Plus Query: 408 acgtattccttaagaagttccttggcttgaaccaatttcgacagtaagttgcggtaaacg 467 ||||||||||| ||||||||||| || || |||||||| || |||| ||| |||||||| Sbjct: 22266167 acgtattccttgagaagttccttagcctggaccaatttggagagtatgttccggtaaaca 22266226 Query: 468 tcaaggtctctatccacgcnnnnnnnattgatgtttagagcagcgcaaagct 519 || || || || || || | ||||||||||||||||||||||||| Sbjct: 22266227 tcgagatccctgtcgacacttcttttgttgatgtttagagcagcgcaaagct 22266278
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 54.0 bits (27), Expect = 6e-04 Identities = 89/112 (79%) Strand = Plus / Plus Query: 408 acgtattccttaagaagttccttggcttgaaccaatttcgacagtaagttgcggtaaacg 467 ||||||||||| ||||||||||| || || |||||||| || |||| ||| |||||||| Sbjct: 71413 acgtattccttgagaagttccttagcctggaccaatttggagagtatgttccggtaaaca 71472 Query: 468 tcaaggtctctatccacgcnnnnnnnattgatgtttagagcagcgcaaagct 519 || || || || || || | ||||||||||||||||||||||||| Sbjct: 71473 tcgagatccctgtcgacacttcttttgttgatgtttagagcagcgcaaagct 71524
>gb|AY087394.1| Arabidopsis thaliana clone 34875 mRNA, complete sequence Length = 1246 Score = 48.1 bits (24), Expect = 0.036 Identities = 42/48 (87%) Strand = Plus / Minus Query: 389 cttcttcttttccctctcgacgtattccttaagaagttccttggcttg 436 ||||||||| ||||||||||| || |||||||| | ||| |||||||| Sbjct: 916 cttcttcttctccctctcgacatactccttaagcaattcattggcttg 869
>gb|AY899908.1| Arabidopsis thaliana chloroplast thylakoid formation 1 (THF1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1245 Score = 48.1 bits (24), Expect = 0.036 Identities = 42/48 (87%) Strand = Plus / Minus Query: 389 cttcttcttttccctctcgacgtattccttaagaagttccttggcttg 436 ||||||||| ||||||||||| || |||||||| | ||| |||||||| Sbjct: 915 cttcttcttctccctctcgacatactccttaagcaattcattggcttg 868
>gb|AY104484.1| Zea mays PCO107854 mRNA sequence Length = 842 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 450 agtaagttgcggtaaacgtcaaggtctctatccac 484 |||| |||||||||||| |||||||| |||||||| Sbjct: 841 agtatgttgcggtaaacatcaaggtccctatccac 807
>emb|AL607074.13| Mouse DNA sequence from clone RP23-174M9 on chromosome 4, complete sequence Length = 204428 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 542 tatctattgttatatcagcaaataatg 568 ||||||||||||| ||||||||||||| Sbjct: 126665 tatctattgttatgtcagcaaataatg 126639
>gb|AC121803.3| Mus musculus BAC clone RP23-441A23 from chromosome 6, complete sequence Length = 211809 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 385 ctctcttcttcttttccctctc 406 |||||||||||||||||||||| Sbjct: 68122 ctctcttcttcttttccctctc 68143
>gb|AC104466.10| Homo sapiens 3 BAC RP11-35A16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 85550 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 514 aaagctattgagcaagaagaaa 535 |||||||||||||||||||||| Sbjct: 72955 aaagctattgagcaagaagaaa 72934
>dbj|AP004491.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT17G08, TM0023, complete sequence Length = 91039 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 378 ctctctgctctcttcttctttt 399 |||||||||||||||||||||| Sbjct: 32616 ctctctgctctcttcttctttt 32595
>gb|AC105487.6| Rattus norvegicus 1 BAC CH230-229J7 (Children's Hospital Oakland Research Institute) complete sequence Length = 221396 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 386 tctcttcttcttttccctctc 406 ||||||||||||||||||||| Sbjct: 88719 tctcttcttcttttccctctc 88699
>emb|BX908742.7| Zebrafish DNA sequence from clone DKEY-246G23 in linkage group 18, complete sequence Length = 232903 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 411 tattccttaagaagttccttg 431 ||||||||||||||||||||| Sbjct: 12936 tattccttaagaagttccttg 12916
>dbj|AK078026.1| Mus musculus 11 days embryo head cDNA, RIKEN full-length enriched library, clone:6230415J03 product:unclassifiable, full insert sequence Length = 1787 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 386 tctcttcttcttttccctctc 406 ||||||||||||||||||||| Sbjct: 1109 tctcttcttcttttccctctc 1089
>gb|AC113955.20| Mus musculus chromosome 7, clone RP23-402K24, complete sequence Length = 196206 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 386 tctcttcttcttttccctctc 406 ||||||||||||||||||||| Sbjct: 118373 tctcttcttcttttccctctc 118353
>emb|AL115993.1|CNS01CU9 Botrytis cinerea strain T4 cDNA library Length = 720 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 tggcttgaaccaatttcgaca 450 ||||||||||||||||||||| Sbjct: 691 tggcttgaaccaatttcgaca 671
>emb|AL116480.1|CNS01D7S Botrytis cinerea strain T4 cDNA library Length = 540 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 tggcttgaaccaatttcgaca 450 ||||||||||||||||||||| Sbjct: 349 tggcttgaaccaatttcgaca 329
>gb|AC090164.22| Homo sapiens chromosome 15, clone RP11-14C10, complete sequence Length = 204674 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 528 agaagaaaagtcagtatctat 548 ||||||||||||||||||||| Sbjct: 47760 agaagaaaagtcagtatctat 47740
>emb|AL683856.10| Mouse DNA sequence from clone RP23-46J2 on chromosome X, complete sequence Length = 224461 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 386 tctcttcttcttttccctctc 406 ||||||||||||||||||||| Sbjct: 158791 tctcttcttcttttccctctc 158771
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome Length = 1767403 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 607 tcttctaatactaataatttt 627 ||||||||||||||||||||| Sbjct: 1221339 tcttctaatactaataatttt 1221359
>gb|AC117787.8| Mus musculus chromosome 1, clone RP24-546N2, complete sequence Length = 203962 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 tctctgctctcttcttcttttccc 402 ||||||||||||||| |||||||| Sbjct: 129668 tctctgctctcttctccttttccc 129691
>ref|XM_529718.1| PREDICTED: Pan troglodytes LOC453671 (LOC453671), mRNA Length = 1007 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 cttaagaagttccttggctt 435 |||||||||||||||||||| Sbjct: 135 cttaagaagttccttggctt 154
>gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, complete sequence Length = 220191 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tctcttcttcttttccctct 405 |||||||||||||||||||| Sbjct: 16214 tctcttcttcttttccctct 16195
>gb|AC116812.10| Mus musculus chromosome 15, clone RP24-357G13, complete sequence Length = 183993 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tctctctgctctcttcttct 396 |||||||||||||||||||| Sbjct: 22366 tctctctgctctcttcttct 22385
>gb|AC099572.12| Mus musculus chromosome 15, clone RP23-16A17, complete sequence Length = 200229 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 tctctctgctctcttcttct 396 |||||||||||||||||||| Sbjct: 5312 tctctctgctctcttcttct 5293
>gb|AC116871.6| Mus musculus chromosome 19, clone RP24-417P12, complete sequence Length = 161959 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tctctctgctctcttcttct 396 |||||||||||||||||||| Sbjct: 49162 tctctctgctctcttcttct 49181
>ref|NG_000008.6| Homo sapiens cytochrome P450, family 2, subfamily A (CYP2A) on chromosome 19 Length = 413528 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 atctctctgctctcttcttctttt 399 ||||||||||| |||||||||||| Sbjct: 20020 atctctctgctgtcttcttctttt 20043
>gb|AE002145.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 46 of 59 of the complete genome Length = 17605 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 609 ttctaatactaataattttg 628 |||||||||||||||||||| Sbjct: 5670 ttctaatactaataattttg 5651
>gb|AC089992.2| Bos taurus clone RP42-210F11, complete sequence Length = 147922 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tctctctgctctcttcttct 396 |||||||||||||||||||| Sbjct: 69562 tctctctgctctcttcttct 69581
>gb|AC164532.4| Mus musculus chromosome 7, clone RP24-64B10, complete sequence Length = 206573 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tctctctgctctcttcttct 396 |||||||||||||||||||| Sbjct: 75337 tctctctgctctcttcttct 75356
>gb|DP000008.1| Bos taurus target 1 genomic scaffold Length = 2072671 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tctctctgctctcttcttct 396 |||||||||||||||||||| Sbjct: 1297735 tctctctgctctcttcttct 1297754
>emb|Z46811.1|CEC09D8 Caenorhabditis elegans Cosmid C09D8, complete sequence Length = 32978 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 aagctattgagcaagaagaa 534 |||||||||||||||||||| Sbjct: 13388 aagctattgagcaagaagaa 13369
>ref|XM_947168.1| Theileria annulata strain Ankara exonuclease (TA13280) partial mRNA Length = 3363 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 396 ttttccctctcgacgtattcctta 419 |||||||||||||| ||||||||| Sbjct: 956 ttttccctctcgacatattcctta 933
>emb|CR854896.11| Zebrafish DNA sequence from clone DKEY-239B8 in linkage group 13, complete sequence Length = 165556 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 tctctctgctctcttcttct 396 |||||||||||||||||||| Sbjct: 100624 tctctctgctctcttcttct 100605 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 tctctctgctctcttcttct 396 |||||||||||||||||||| Sbjct: 71564 tctctctgctctcttcttct 71545
>emb|AL772182.3| Human DNA sequence from clone RP11-36K22 on chromosome X, complete sequence Length = 161047 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 ctccaatctctctgctctct 390 |||||||||||||||||||| Sbjct: 36550 ctccaatctctctgctctct 36531
>gb|AE014838.1| Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 603 tttttcttctaatactaataattttggt 630 ||||||| ||||||| |||||||||||| Sbjct: 234641 tttttctactaatacaaataattttggt 234668
>gb|AY342161.1| Solanum tuberosum cultivar Kennebec light-regulated chloroplast-localized protein (Thf1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1281 Score = 40.1 bits (20), Expect = 8.7 Identities = 80/100 (80%) Strand = Plus / Minus Query: 385 ctctcttcttcttttccctctcgacgtattccttaagaagttccttggcttgaaccaatt 444 ||||||| ||||| ||||| || ||||||||||| | || || || || ||||||| | Sbjct: 895 ctctctttttcttctccctttccacgtattccttcaacagctctttagcctgaaccagct 836 Query: 445 tcgacagtaagttgcggtaaacgtcaaggtctctatccac 484 | || || || ||||| |||||||||||||| | |||||| Sbjct: 835 tggagagcaaattgcgataaacgtcaaggtcccgatccac 796
>gb|AC128353.6| Rattus norvegicus 13 BAC CH230-148A5 (Children's Hospital Oakland Research Institute) complete sequence Length = 207556 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 383 tgctctcttcttcttttccctctc 406 |||||||||||||| ||||||||| Sbjct: 122070 tgctctcttcttctcttccctctc 122047
>emb|AL161624.7| Human DNA sequence from clone RP11-487I9 on chromosome X Contains part of the DIAPH2 gene for Drosophila diaphanous homolog 2 and the 3' end of a novel gene (EPAG), complete sequence Length = 133021 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 atgtataactgttaatatct 270 |||||||||||||||||||| Sbjct: 49628 atgtataactgttaatatct 49609
>emb|AL135785.10| Human DNA sequence from clone RP11-113O24 on chromosome 9p11-13.3 Contains a novel gene, possible ortholog of mouse insulin-like growth factor binding protein 7 (IGFBP7), a novel gene similar to aldehyde dehydrogenase 1 family, member B1 (ALDH5, ALDHX, MGC2230) (ALDH1B1), a novel gene and four CpG islands, complete sequence Length = 166207 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 gtaaacgtcaaggtctctat 480 |||||||||||||||||||| Sbjct: 135197 gtaaacgtcaaggtctctat 135216
>emb|BX901922.9| Zebrafish DNA sequence from clone DKEY-33C12 in linkage group 13, complete sequence Length = 242350 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tctctctgctctcttcttct 396 |||||||||||||||||||| Sbjct: 187137 tctctctgctctcttcttct 187156 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tctctctgctctcttcttct 396 |||||||||||||||||||| Sbjct: 157745 tctctctgctctcttcttct 157764
>emb|BX000359.7| Mouse DNA sequence from clone RP23-343C18 on chromosome 11 Contains the gene for a novel helix-loop-helix DNA-binding domain containing protein, a novel gene, the Gosr1 gene for golgi SNAP receptor complex member 1 and a CpG island, complete sequence Length = 118586 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 ctctcttcttcttttccctc 404 |||||||||||||||||||| Sbjct: 34246 ctctcttcttcttttccctc 34265
>emb|AL845307.29| Zebrafish DNA sequence from clone DKEY-56N17 in linkage group 13, complete sequence Length = 135795 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tctctctgctctcttcttct 396 |||||||||||||||||||| Sbjct: 120423 tctctctgctctcttcttct 120442
>emb|CR848040.6| Zebrafish DNA sequence from clone DKEY-19P15 in linkage group 13, complete sequence Length = 146215 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tctctctgctctcttcttct 396 |||||||||||||||||||| Sbjct: 40145 tctctctgctctcttcttct 40164
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 ccttggcttgaaccaatttc 446 |||||||||||||||||||| Sbjct: 2294119 ccttggcttgaaccaatttc 2294138
>gb|AF479287.1| Mus musculus PHF5B (Phf5b) pseudogene, complete sequence Length = 5285 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tctctctgctctcttcttct 396 |||||||||||||||||||| Sbjct: 3719 tctctctgctctcttcttct 3738
>gb|AC074312.64| Mus musculus strain C57BL/6J clone rp23-311c19 map 7, complete sequence Length = 220077 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 tctctctgctctcttcttct 396 |||||||||||||||||||| Sbjct: 37435 tctctctgctctcttcttct 37416
>gb|AC006234.4| Arabidopsis thaliana chromosome 2 clone F5H14 map mi148, complete sequence Length = 129667 Score = 40.1 bits (20), Expect = 8.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 401 cctctcgacgtattccttaagaagttccttggcttg 436 ||||||||| || |||||||| | |||||||||||| Sbjct: 42757 cctctcgacatactccttaagcaattccttggcttg 42792
>gb|AC016251.9| Homo sapiens chromosome 15, clone RP11-759A24, complete sequence Length = 182943 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 cttaagaagttccttggctt 435 |||||||||||||||||||| Sbjct: 119228 cttaagaagttccttggctt 119247
>gb|AC012409.9| Homo sapiens chromosome 15, clone RP11-327J17, complete sequence Length = 183014 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 cttaagaagttccttggctt 435 |||||||||||||||||||| Sbjct: 48887 cttaagaagttccttggctt 48906
>gb|AF055955.2| Anolis marcanoi NADH dehydrogenase subunit II (ND2) gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, and tRNA-Tyr genes, complete sequence; and cytochrome oxidase subunit I gene, partial cds; mitochondrial genes for mitochondrial products Length = 1429 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 606 ttcttctaatactaataattttgg 629 |||||||||||||||| ||||||| Sbjct: 807 ttcttctaatactaatcattttgg 784
>gb|AC099538.2| Homo sapiens chromosome 3 clone RP11-90I9, complete sequence Length = 170033 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gttgagttaatgcttcaagg 321 |||||||||||||||||||| Sbjct: 6476 gttgagttaatgcttcaagg 6495
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 tctctctgctctcttcttcttttc 400 ||||||| |||||||||||||||| Sbjct: 16997189 tctctctcctctcttcttcttttc 16997166 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 tctctctgctctcttcttcttttc 400 ||||||| |||||||||||||||| Sbjct: 16976888 tctctctcctctcttcttcttttc 16976865
>emb|BX818901.1|CNS0A8Y0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB24ZE08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1114 Score = 40.1 bits (20), Expect = 8.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 401 cctctcgacgtattccttaagaagttccttggcttg 436 ||||||||| || |||||||| | |||||||||||| Sbjct: 886 cctctcgacatactccttaagcaattccttggcttg 851
>gb|AC008537.5|AC008537 Homo sapiens chromosome 19 clone CTC-490E21, complete sequence Length = 169089 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 atctctctgctctcttcttctttt 399 ||||||||||| |||||||||||| Sbjct: 41020 atctctctgctgtcttcttctttt 41043
>gb|AC099053.2| Homo sapiens chromosome 3 clone RP11-464H2, complete sequence Length = 200069 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gttgagttaatgcttcaagg 321 |||||||||||||||||||| Sbjct: 172320 gttgagttaatgcttcaagg 172339
>gb|AC023795.18| Homo sapiens 12 BAC RP11-242B24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161838 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 ctctgctctcttcttctttt 399 |||||||||||||||||||| Sbjct: 101981 ctctgctctcttcttctttt 102000
>dbj|AK173094.1| Mus musculus premature mRNA for mKIAA1067 protein Length = 6719 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 ctctctgctctcttcttctt 397 |||||||||||||||||||| Sbjct: 1932 ctctctgctctcttcttctt 1951
>emb|BX649614.4| Mouse DNA sequence from clone RP23-372L10 on chromosome 4, complete sequence Length = 12312 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 tcagtatctattgttatatc 557 |||||||||||||||||||| Sbjct: 6138 tcagtatctattgttatatc 6157
>dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07, map 22, complete sequences Length = 181678 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 tgttatatcagcaaataatg 568 |||||||||||||||||||| Sbjct: 99467 tgttatatcagcaaataatg 99448
>gb|AC153611.12| Mus musculus 6 BAC RP23-110P14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 174538 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tctctctgctctcttcttct 396 |||||||||||||||||||| Sbjct: 67099 tctctctgctctcttcttct 67118
>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 tgttatatcagcaaataatg 568 |||||||||||||||||||| Sbjct: 234760 tgttatatcagcaaataatg 234741
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 603 tttttcttctaatactaata 622 |||||||||||||||||||| Sbjct: 1135523 tttttcttctaatactaata 1135504
>emb|AL929156.10| Mouse DNA sequence from clone RP23-475H18 on chromosome 2, complete sequence Length = 206918 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 ctcttcttcttttccctctc 406 |||||||||||||||||||| Sbjct: 117334 ctcttcttcttttccctctc 117353
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 tctctctgctctcttcttcttttc 400 ||||||| |||||||||||||||| Sbjct: 16950422 tctctctcctctcttcttcttttc 16950399 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 tctctctgctctcttcttcttttc 400 ||||||| |||||||||||||||| Sbjct: 16930121 tctctctcctctcttcttcttttc 16930098
>emb|AL732639.5|CNS08C9E Oryza sativa chromosome 12, . BAC OSJNBa0038H18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 150238 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 tctctctgctctcttcttcttttc 400 ||||||| |||||||||||||||| Sbjct: 119232 tctctctcctctcttcttcttttc 119209 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 tctctctgctctcttcttcttttc 400 ||||||| |||||||||||||||| Sbjct: 98931 tctctctcctctcttcttcttttc 98908
>gb|L47539.1|HEACRP Haemophilus somnus cyclic AMP receptor protein (crp) gene, complete cds Length = 752 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 acagcctcgttcggcttggg 367 |||||||||||||||||||| Sbjct: 359 acagcctcgttcggcttggg 378
>emb|AL645861.12| Mouse DNA sequence from clone RP23-184G6 on chromosome 11, complete sequence Length = 212385 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 ctctctgctctcttcttctt 397 |||||||||||||||||||| Sbjct: 47200 ctctctgctctcttcttctt 47181
>dbj|AP000476.2| Homo sapiens genomic DNA, chromosome 21q21.2, clone:B86D9, LL56-APP region, complete sequence Length = 171452 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 tgttatatcagcaaataatg 568 |||||||||||||||||||| Sbjct: 70141 tgttatatcagcaaataatg 70122
>dbj|AP001091.5| Homo sapiens genomic DNA, chromosome 18p clone:RP11-713N19, complete sequences Length = 207785 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 ctcttcttcttttccctctc 406 |||||||||||||||||||| Sbjct: 13020 ctcttcttcttttccctctc 13039 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,403,402 Number of Sequences: 3902068 Number of extensions: 4403402 Number of successful extensions: 113760 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 113423 Number of HSP's gapped (non-prelim): 333 length of query: 640 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 617 effective length of database: 17,143,297,704 effective search space: 10577414683368 effective search space used: 10577414683368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)