ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10j04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NIA3_MAIZE (P49102) Nitrate reductase [NADH] 3 (EC 1.7.1.1) (NR) 32 1.3
2TNFL6_RAT (P36940) Tumor necrosis factor ligand superfamily memb... 31 3.6
3ENC_DROME (Q8MSX1) Protein encore 30 6.2
4FBX42_PONPY (Q5RDA9) F-box only protein 42 30 6.2
5FBX42_MOUSE (Q6PDJ6) F-box only protein 42 30 6.2
6FBX42_HUMAN (Q6P3S6) F-box only protein 42 30 6.2

>NIA3_MAIZE (P49102) Nitrate reductase [NADH] 3 (EC 1.7.1.1) (NR)|
          Length = 889

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +1

Query: 172 HECDGFFWLGWVGLGVSNRNQVCINT-TQKSRLIPRMDGWMHCIQLRRKPDGRHGYATPT 348
           HE  G  +L  +G+  S R++  ++   + S+ + R+ G  H +        RHG+ TP 
Sbjct: 70  HETYGSHYLANLGVEQSVRDEGTVDAWVESSQSLIRLTG-KHSLNGELPRLMRHGFITPV 128

Query: 349 PR-FAHNRSRRGRGSWPT 399
           PR +  N     RG W T
Sbjct: 129 PRHYVRNHGPVPRGDWAT 146



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>TNFL6_RAT (P36940) Tumor necrosis factor ligand superfamily member 6 (Fas|
           antigen ligand) (Fas ligand) (CD178 antigen) (CD95L
           protein) [Contains: Tumor necrosis factor ligand
           superfamily member 6, membrane form; Tumor necrosis
           factor ligand superfamily m
          Length = 278

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 487 SEQTGPWSPPSL*SGTRCPTAGGRPR*GTESPAPPP 594
           S  T PW+PP   S   CP++G R   G   P PPP
Sbjct: 17  SSATSPWAPPG--SVFSCPSSGPRGP-GQRRPPPPP 49



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>ENC_DROME (Q8MSX1) Protein encore|
          Length = 1818

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 310  GGAGCNASIH--PSSVLGDSSELYLCRPDSCC*HPTQPNPTKKSH 182
            GG+G + S +  P+S++G  S      P++    P QP PT  SH
Sbjct: 1604 GGSGSHESSNNSPNSIVGSQSNSAANTPNAAAPPPPQPQPTLVSH 1648



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>FBX42_PONPY (Q5RDA9) F-box only protein 42|
          Length = 717

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
 Frame = -1

Query: 276 PRY*ATLLSCIYADLIPVAD--TQPNPT---QPKKAITFMCIFSPSKHWWS 139
           P+  ATL+  +Y DL+ +    T+P+P    QP++    +  +SPSK+WW+
Sbjct: 173 PKAGATLV--VYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWN 221



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>FBX42_MOUSE (Q6PDJ6) F-box only protein 42|
          Length = 717

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
 Frame = -1

Query: 276 PRY*ATLLSCIYADLIPVAD--TQPNPT---QPKKAITFMCIFSPSKHWWS 139
           P+  ATL+  +Y DL+ +    T+P+P    QP++    +  +SPSK+WW+
Sbjct: 173 PKAGATLV--VYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWN 221



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>FBX42_HUMAN (Q6P3S6) F-box only protein 42|
          Length = 717

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
 Frame = -1

Query: 276 PRY*ATLLSCIYADLIPVAD--TQPNPT---QPKKAITFMCIFSPSKHWWS 139
           P+  ATL+  +Y DL+ +    T+P+P    QP++    +  +SPSK+WW+
Sbjct: 173 PKAGATLV--VYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWN 221


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,499,176
Number of Sequences: 219361
Number of extensions: 2161525
Number of successful extensions: 6118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6115
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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