ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6g24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRPV1_RABIT (Q6RX08) Transient receptor potential cation channel... 28 7.0

>TRPV1_RABIT (Q6RX08) Transient receptor potential cation channel subfamily V|
           member 1 (TrpV1) (osm-9-like TRP channel 1) (OTRPC1)
           (Vanilloid receptor 1)
          Length = 842

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 122 IFHFIFAIYLLFLV*VSINSYFVPVNIAPVDTLXQIP 12
           IF+F F +Y L+++  +  +Y+ PV+  P   L  +P
Sbjct: 436 IFYFNFFVYCLYMIIFTTAAYYRPVDGLPPYKLRNLP 472


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,549,664
Number of Sequences: 219361
Number of extensions: 161464
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 80,573,946
effective HSP length: 21
effective length of database: 75,967,365
effective search space used: 1823216760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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