ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal10j03 |
|---|---|
| Clone Library Name | barley_pub |
>AMYB_SOYBN (P10538) Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) Length = 495 Score = 107 bits (268), Expect = 2e-23 Identities = 57/153 (37%), Positives = 92/153 (60%), Gaps = 5/153 (3%) Frame = -1 Query: 625 SGIHWHYYTCSHPSELTAGYYNTLLRDGYLPIAQMFSRHRAALCCGCFDLRDAER-SSPQ 449 SGIHW Y +H +ELTAGYYN RDGY PIA+M SRH A L C ++RD+E+ S + Sbjct: 297 SGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAK 356 Query: 448 SSPEGTLRQLMAAAKVCNLPLNGENSVPRLDDASLSQVVRSSRLYSGGTSG----ASFSF 281 S P+ ++Q+++ ++ + GEN++PR D + +Q++ +++ +G + F Sbjct: 357 SGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGV 416 Query: 280 NYVRMNKSLFESHNWNRFTKFVRKMSDARTFLA 182 Y+R++ L + N+N F KFV KM + + A Sbjct: 417 TYLRLSDDLLQKSNFNIFKKFVLKMHADQDYCA 449
>AMYB_HORVU (P16098) Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) Length = 535 Score = 106 bits (265), Expect = 5e-23 Identities = 59/145 (40%), Positives = 87/145 (60%), Gaps = 5/145 (3%) Frame = -1 Query: 625 SGIHWHYYTCSHPSELTAGYYNTLLRDGYLPIAQMFSRHRAALCCGCFDLRDAERSS-PQ 449 SGIHW Y SH +ELTAGYYN RDGY IA+M RHRA++ C ++RD E+SS Sbjct: 295 SGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDLEQSSQAM 354 Query: 448 SSPEGTLRQLMAAAKVCNLPLNGENSVPRLDDASLSQVVRSSRLYSGGTSGAS----FSF 281 S+PE ++Q+++A L + EN++PR D + + ++R++R + SG F F Sbjct: 355 SAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGF 414 Query: 280 NYVRMNKSLFESHNWNRFTKFVRKM 206 Y+R++ L E N+ F FV +M Sbjct: 415 TYLRLSNQLVEGQNYVNFKTFVDRM 439
>AMYB_VIGUN (O64407) Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) Length = 496 Score = 106 bits (264), Expect = 6e-23 Identities = 57/145 (39%), Positives = 88/145 (60%), Gaps = 5/145 (3%) Frame = -1 Query: 625 SGIHWHYYTCSHPSELTAGYYNTLLRDGYLPIAQMFSRHRAALCCGCFDLRDAERSS-PQ 449 SGIHW Y +H +ELTAGYYN RDGY PIA+M SRH A+L C ++RD+E+SS Q Sbjct: 298 SGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHASLNFTCLEMRDSEQSSDAQ 357 Query: 448 SSPEGTLRQLMAAAKVCNLPLNGENSVPRLDDASLSQVVRSSRLYSGGTSG----ASFSF 281 S P+ ++Q+++ N+ + GEN++ R D + +Q++ ++R G + Sbjct: 358 SGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKHRMYGV 417 Query: 280 NYVRMNKSLFESHNWNRFTKFVRKM 206 Y+R++ L + N++ F KFV KM Sbjct: 418 TYLRLSDELLQQSNFDIFKKFVVKM 442
>AMYB_TRIRP (O65015) Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) Length = 496 Score = 103 bits (258), Expect = 3e-22 Identities = 56/145 (38%), Positives = 86/145 (59%), Gaps = 5/145 (3%) Frame = -1 Query: 625 SGIHWHYYTCSHPSELTAGYYNTLLRDGYLPIAQMFSRHRAALCCGCFDLRDAERSS-PQ 449 SGIHW Y +H +ELTAGYYN RDGY PIA+M SRH L C ++RD+E+SS Q Sbjct: 298 SGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHGILNFTCLEMRDSEQSSDAQ 357 Query: 448 SSPEGTLRQLMAAAKVCNLPLNGENSVPRLDDASLSQVVRSSRLYSGGTSG----ASFSF 281 S+P+ ++Q+++ N+ + GEN++ R D + +Q++ ++R G + Sbjct: 358 SAPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGV 417 Query: 280 NYVRMNKSLFESHNWNRFTKFVRKM 206 Y+R++ L + N+ F KFV KM Sbjct: 418 TYLRLSDDLLQESNFEIFKKFVVKM 442
>AMYB_MEDSA (O22585) Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) Length = 496 Score = 103 bits (257), Expect = 4e-22 Identities = 56/145 (38%), Positives = 87/145 (60%), Gaps = 5/145 (3%) Frame = -1 Query: 625 SGIHWHYYTCSHPSELTAGYYNTLLRDGYLPIAQMFSRHRAALCCGCFDLRDAERSS-PQ 449 SGIHW Y +H +ELTAGYYN RDGY PIA++ SRH A L C ++RD+E+SS Sbjct: 298 SGIHWWYKAPNHAAELTAGYYNLDDRDGYRPIAKIVSRHHAILNFTCLEMRDSEQSSDAH 357 Query: 448 SSPEGTLRQLMAAAKVCNLPLNGENSVPRLDDASLSQVVRSSRLYSGGTSG----ASFSF 281 SSP+ ++Q+++ N+ + GEN++ R D + +Q++ ++R G + Sbjct: 358 SSPQKLVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGV 417 Query: 280 NYVRMNKSLFESHNWNRFTKFVRKM 206 Y+R++ L + N++ F KFV KM Sbjct: 418 TYLRLSDDLMQQSNFDIFKKFVVKM 442
>AMYB_MAIZE (P55005) Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) Length = 488 Score = 102 bits (255), Expect = 7e-22 Identities = 57/145 (39%), Positives = 88/145 (60%), Gaps = 5/145 (3%) Frame = -1 Query: 625 SGIHWHYYTCSHPSELTAGYYNTLLRDGYLPIAQMFSRHRAALCCGCFDLRDAERSS-PQ 449 SGIHW Y +H +ELTAGYYN RDGY IA M +RHRA++ C ++RD+E+SS + Sbjct: 295 SGIHWWYNVPNHAAELTAGYYNLDDRDGYRTIAHMLTRHRASMNFTCAEMRDSEQSSEAK 354 Query: 448 SSPEGTLRQLMAAAKVCNLPLNGENSVPRLDDASLSQVVRSSRLYSGGTSGAS----FSF 281 S+PE ++Q+++A L L EN++ R D + + ++R++R +G F Sbjct: 355 SAPEELVQQVLSAGWREGLNLACENALNRYDATAYNTILRNARPQGINKNGPPEHKLHGF 414 Query: 280 NYVRMNKSLFESHNWNRFTKFVRKM 206 Y+R++ LF+ N+ F FVR+M Sbjct: 415 TYLRVSDELFQEQNYTTFKTFVRRM 439
>AMYB_IPOBA (P10537) Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) Length = 498 Score = 101 bits (252), Expect = 2e-21 Identities = 55/145 (37%), Positives = 89/145 (61%), Gaps = 5/145 (3%) Frame = -1 Query: 625 SGIHWHYYTCSHPSELTAGYYNTLLRDGYLPIAQMFSRHRAALCCGCFDLRDAER-SSPQ 449 SGIHW Y SH +ELTAG+YN RDGY PIA+M +RH A L C ++RD+E+ + + Sbjct: 299 SGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAK 358 Query: 448 SSPEGTLRQLMAAAKVCNLPLNGENSVPRLDDASLSQV---VRSSRLYSGGTSGASFS-F 281 S+P+ ++Q++++ + + GEN++PR D + +Q+ VR + + G S Sbjct: 359 SAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKLKMSGL 418 Query: 280 NYVRMNKSLFESHNWNRFTKFVRKM 206 Y+R++ L ++ N+ F KFV+KM Sbjct: 419 TYLRLSDDLLQTDNFELFKKFVKKM 443
>AMYB_WHEAT (P93594) Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) Length = 503 Score = 99.0 bits (245), Expect = 1e-20 Identities = 55/145 (37%), Positives = 86/145 (59%), Gaps = 5/145 (3%) Frame = -1 Query: 625 SGIHWHYYTCSHPSELTAGYYNTLLRDGYLPIAQMFSRHRAALCCGCFDLRDAERS-SPQ 449 SGIHW Y +H +ELTAGYYN RDGY IA+M +RH A++ C ++RD+E+S + Sbjct: 295 SGIHWWYRVPNHAAELTAGYYNLDDRDGYRTIARMLTRHHASMNFTCAEMRDSEQSEEAK 354 Query: 448 SSPEGTLRQLMAAAKVCNLPLNGENSVPRLDDASLSQVVRSSRLYSGGTSGAS----FSF 281 S+PE ++Q+++A L + EN++ R D + + ++R++R +G F F Sbjct: 355 SAPEELVQQVLSAGWREGLHVACENALGRYDATAYNTILRNARPKGINKNGPPEHKLFGF 414 Query: 280 NYVRMNKSLFESHNWNRFTKFVRKM 206 Y+R++ L E N+ F FV KM Sbjct: 415 TYLRLSNELLEGQNYATFQTFVEKM 439
>AMYB_ARATH (P25853) Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) Length = 498 Score = 94.7 bits (234), Expect = 2e-19 Identities = 49/145 (33%), Positives = 85/145 (58%), Gaps = 5/145 (3%) Frame = -1 Query: 625 SGIHWHYYTCSHPSELTAGYYNTLLRDGYLPIAQMFSRHRAALCCGCFDLRDAERSSPQ- 449 SGIHW Y SH +ELTAGYYN RDGY PIA+M S+H L C +++D + ++ Sbjct: 300 SGIHWLYNHHSHAAELTAGYYNLFKRDGYRPIARMLSKHYGILNFTCLEMKDTDNTAEAL 359 Query: 448 SSPEGTLRQLMAAAKVCNLPLNGENSVPRLDDASLSQVVRSSRLYSGGTSG----ASFSF 281 S+P+ ++++++ A + + GEN++ +Q++ ++R +G + F Sbjct: 360 SAPQELVQEVLSKAWKEGIEVAGENALETYGAKGYNQILLNARPNGVNPNGKPKLRMYGF 419 Query: 280 NYVRMNKSLFESHNWNRFTKFVRKM 206 Y+R++ ++F+ +N+ F K VRKM Sbjct: 420 TYLRLSDTVFQENNFELFKKLVRKM 444
>AMYB_SECCE (P30271) Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) (Fragment) Length = 222 Score = 92.4 bits (228), Expect = 9e-19 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 5/135 (3%) Frame = -1 Query: 595 SHPSELTAGYYNTLLRDGYLPIAQMFSRHRAALCCGCFDLRDAERSS-PQSSPEGTLRQL 419 SH +E+TAGYYN RD Y PIA+M +RH A+L C ++RD+E+SS S+PE ++Q+ Sbjct: 1 SHAAEVTAGYYNLHDRDDYRPIARMLTRHHASLNFTCAEMRDSEQSSQAMSAPEELVQQV 60 Query: 418 MAAAKVCNLPLNGENSVPRLDDASLSQVVRSSR----LYSGGTSGASFSFNYVRMNKSLF 251 +A L + EN++PR D + + ++R++R +S T F F Y+R++ L Sbjct: 61 WSAGWREGLNIACENALPRYDPTAYNTILRNARPHGINHSSPTEHKLFGFTYLRLSNQLL 120 Query: 250 ESHNWNRFTKFVRKM 206 E N+ F FV +M Sbjct: 121 EGQNYVNFKTFVDRM 135
>AMYB_PAEPO (P21543) Beta/alpha-amylase precursor [Includes: Beta-amylase (EC| 3.2.1.2); Alpha-amylase (EC 3.2.1.1)] Length = 1196 Score = 36.6 bits (83), Expect = 0.062 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Frame = -1 Query: 625 SGIHWHYYTCS--HPSELTAGYYNTLLRDGYLPIAQMFSRHRAALCCGCFDLRDAERSSP 452 SG+HW + H +E GYY+ Y + Q F L C ++ D+ + Sbjct: 316 SGLHWQMNNPAMPHGTEQAGGYYD------YNRLIQKFKDADLDLTFTCLEMSDSGTAPN 369 Query: 451 QSSPEGTLRQLMAAAKVCNLPLNGENSVP 365 S P + + + A + LNGEN++P Sbjct: 370 YSLPSTLVDTVSSIANAKGVRLNGENALP 398
>AMYB_BACCE (P36924) Beta-amylase precursor (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) Length = 546 Score = 35.8 bits (81), Expect = 0.11 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Frame = -1 Query: 625 SGIHWHYY--TCSHPSELTAGYYNTLLRDGYLPIAQMFSRHRAALCCGCFDLRDAERSSP 452 +G+HW Y T H +E AGY + Y + F + + C ++ D Sbjct: 319 AGVHWQYNNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPE 372 Query: 451 QSSPEGTLRQLMAAAKVCNLPLNGENSV 368 S P+ ++ + A + LNGEN++ Sbjct: 373 YSMPKTLVQNIATLANEKGIVLNGENAL 400
>AMYB_BACFI (P96513) Beta-amylase precursor (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) (Fragment) Length = 468 Score = 34.3 bits (77), Expect = 0.31 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Frame = -1 Query: 625 SGIHWHYYTCS--HPSELTAGYYNTLLRDGYLPIAQMFSRHRAALCCGCFDLRDAERSSP 452 SG+HW + H +E GYY+ Y + Q F L C ++ D+ + Sbjct: 316 SGLHWQMNNPAMPHSTEQAGGYYD------YNRLIQKFKDADLDLTFTCLEMSDSGTAPN 369 Query: 451 QSSPEGTLRQLMAAAKVCNLPLNGENSV 368 S P + + + A + LNGEN++ Sbjct: 370 YSLPSTLVDTVSSIANAKGVRLNGENAL 397
>AMYB_BACCI (P06547) Beta-amylase precursor (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) Length = 575 Score = 33.9 bits (76), Expect = 0.40 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Frame = -1 Query: 625 SGIHWHYYTCS--HPSELTAGYYNTLLRDGYLPIAQMFSRHRAALCCGCFDLRDAERSSP 452 SGIHW S H +E GYY+ Y + Q F L ++ D+ + Sbjct: 317 SGIHWQMNNPSMPHSAEHAGGYYD------YNRLIQKFKDTDLDLTFTALEMYDSGTAPN 370 Query: 451 QSSPEGTLRQLMAAAKVCNLPLNGENSVP 365 S P + + + A + LNGEN++P Sbjct: 371 YSLPSTLVDTVSSIANSKGVRLNGENALP 399
>VL1_HPV65 (Q07874) Major capsid protein L1| Length = 516 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -2 Query: 192 PFWLG*TSGADSNACLQCQLFGSLAGPAHTHDFLLCVK 79 P+WL G ++ C QLF +L H +F + VK Sbjct: 319 PYWLNRAQGTNNGICWDNQLFVTLVDNTHNTNFTISVK 356
>VL1_HPV04 (Q07860) Major capsid protein L1| Length = 516 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -2 Query: 192 PFWLG*TSGADSNACLQCQLFGSLAGPAHTHDFLLCVK 79 P+WL G ++ C QLF +L H +F + VK Sbjct: 319 PYWLNRAQGTNNGICWDNQLFVTLVDNTHNTNFTISVK 356
>USH1G_HUMAN (Q495M9) Usher syndrome type-1G protein (Scaffold protein| containing ankyrin repeats and SAM domain) Length = 461 Score = 29.6 bits (65), Expect = 7.6 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Frame = -3 Query: 434 HSPAT-HGRR*G---MQSPSQRRELGAEAGRRVAEPGRQKLEALLGRHLG 297 +S AT HG G MQ +RR+ G E +V+E GR+ +L G LG Sbjct: 201 YSQATLHGTARGKTKMQKKLERRKQGGEGTFKVSEDGRKSARSLSGLQLG 250
>BSCL2_RAT (Q5FVJ6) Seipin (Bernardinelli-Seip congenital lipodystrophy type 2| protein homolog) Length = 377 Score = 25.4 bits (54), Expect(2) = 9.7 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = -3 Query: 560 HIAKRRLSPHRPNVLSTQSRPVLRLF*PEGCGEKQSSEQPRG 435 H A+RR+S H+P STQ V + +S E P G Sbjct: 282 HGAQRRISRHQPGQASTQQSDVTE--------DGESPEDPSG 315 Score = 22.3 bits (46), Expect(2) = 9.7 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Frame = -1 Query: 457 SPQSSPEGTLRQLMAAAKVCNLPLNGE-NSVPRLDDAS 347 SP+ P GT QL K PLNGE P D S Sbjct: 309 SPED-PSGTEGQLSEEEKPEKQPLNGEGEQEPEASDGS 345
>VE2_HPV05 (P06921) Regulatory protein E2| Length = 514 Score = 29.3 bits (64), Expect = 9.9 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Frame = -3 Query: 458 QSSEQPRGHSPATHGRR*GMQS----PSQRRELGAEAGRRVAEPGR--QKLEALLGRHLG 297 + S RG S GRR G S P+ +R G A R PG L ++ +H G Sbjct: 360 RGSRGSRGGSRGGRGRRRGRSSSSSSPAHKRSRGGSAKLRGVSPGEVGGSLRSVSSKHTG 419 Query: 296 RVFLLQLCQDEQEP 255 R L +L ++ ++P Sbjct: 420 R--LGRLLEEARDP 431 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,343,952 Number of Sequences: 219361 Number of extensions: 1753589 Number of successful extensions: 5153 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4951 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5134 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
