>Y656_PYRAB (Q9V0Y3) UPF0189 protein PYRAB06560|
          Length = 186

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 40  VSPPTXXXKRPIPFLIYIIGPRCFHKWQKSSK 135
           V+PP    K  + ++I+ +GP C  KW +  +
Sbjct: 73  VTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKR 104

>Y1536_PYRFU (Q8U0P9) UPF0189 protein PF1536|
          Length = 183

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 40  VSPPTXXXKRPIPFLIYIIGPRCFHKWQKSSKYTAK 147
           V+PP    K  + ++I+ +GP C   W +  K   K
Sbjct: 70  VTPPLQLEKNGVKYVIHTVGPYCGGSWDEDKKSKLK 105

>CRE1_NEUCR (O59958) DNA-binding protein cre-1 (Carbon catabolite repressor)|
          Length = 430

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +3

Query: 21  HPTTGSRFSSNGXKXTPHPVSHLHNRTPMFP*MAEIKQVYSKRNSFSTTPQXNRPHAFFP 200
           H    SR  + G +   HP+ H H   P        K + S   +  ++P  + PH++ P
Sbjct: 130 HSNPNSRRGNKGQQQQQHPLVHNHGLQPDMMPPPGPKAIRSAPPTAMSSPNVSPPHSYSP 189

>YDJE_ECOLI (P38055) Inner membrane metabolite transport protein ydjE|
          Length = 452

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 187 WGRFXWGVVLNEFLLLYTCLISAIY 113
           W    +G+V+  FL +Y C  SA+Y
Sbjct: 350 WAILIYGLVMIFFLYMYVCFASAVY 374


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,234,265
Number of Sequences: 219361
Number of extensions: 642508
Number of successful extensions: 1338
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)