ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal10i04 |
|---|---|
| Clone Library Name | barley_pub |
>DCP2_MOUSE (Q9CYC6) mRNA decapping enzyme 2 (EC 3.-.-.-)| Length = 422 Score = 32.7 bits (73), Expect(2) = 0.007 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Frame = -3 Query: 588 KLRKEISEISWHKIDDLLPASDDAISRGVNGM---KLYMVAPFLTGLKAWI 445 K R+EI I W I+ L +D + G+ K YM PF+ L+ W+ Sbjct: 189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFYMAIPFIRPLRDWL 239 Score = 26.2 bits (56), Expect(2) = 0.007 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -2 Query: 634 LYIITGVKXDTVFAPQTKK 578 LYII GV DT F P+T++ Sbjct: 174 LYIIPGVPKDTKFNPKTRR 192
>DCP2_HUMAN (Q8IU60) mRNA decapping enzyme 2 (EC 3.-.-.-) (hDpc) (Nucleoside| diphosphate-linked moiety X motif 20) (Nudix motif 20) Length = 420 Score = 31.2 bits (69), Expect(2) = 0.024 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Frame = -3 Query: 588 KLRKEISEISWHKIDDLLPASDDAISRGVNGM---KLYMVAPFLTGLKAWI 445 K R+EI I W I+ L +D + G+ K +M PF+ L+ W+ Sbjct: 189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWL 239 Score = 25.8 bits (55), Expect(2) = 0.024 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -2 Query: 634 LYIITGVKXDTVFAPQTKK 578 LYII G+ DT F P+T++ Sbjct: 174 LYIIPGIPKDTKFNPKTRR 192
>DCP2_PONPY (Q5REQ8) mRNA decapping enzyme 2 (EC 3.-.-.-)| Length = 385 Score = 31.2 bits (69), Expect(2) = 0.024 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Frame = -3 Query: 588 KLRKEISEISWHKIDDLLPASDDAISRGVNGM---KLYMVAPFLTGLKAWI 445 K R+EI I W I+ L +D + G+ K +M PF+ L+ W+ Sbjct: 189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWL 239 Score = 25.8 bits (55), Expect(2) = 0.024 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -2 Query: 634 LYIITGVKXDTVFAPQTKK 578 LYII G+ DT F P+T++ Sbjct: 174 LYIIPGIPKDTKFNPKTRR 192
>PHSL_VICFA (P53536) Alpha-1,4 glucan phosphorylase, L isozyme, chloroplast| precursor (EC 2.4.1.1) (Starch phosphorylase L) Length = 1003 Score = 30.8 bits (68), Expect = 3.5 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Frame = -3 Query: 276 QHVDNRPGKSFRSFRFDTASILQSID--ASFLRT*DPDRSSTPVPLMCIDYGMMSSLVVN 103 Q V S SF DT SI+ SI A F P++ P + + +L++N Sbjct: 77 QEVQQEAKTSPSSFAPDTTSIVSSIKYHAEFTPLFSPEKFELPQAFIATAQSVRDALIIN 136 Query: 102 WN 97 WN Sbjct: 137 WN 138
>HIS2_YERPE (Q8ZFY1) Histidine biosynthesis bifunctional protein hisIE| [Includes: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH); Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (PRA-PH)] Length = 204 Score = 30.0 bits (66), Expect = 6.0 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 4/129 (3%) Frame = -3 Query: 579 KEISEISWHKIDDLLPASDDAISRGVNGMKLYMVAPFLTGLKAWIGTHRSPVYQKSDTST 400 ++I+++ W K+D L+PA + V+G L M L T + + + T Sbjct: 5 QQINQLDWEKVDHLMPA---IVQHAVSGEVLMMGYMNQEALAVTEKTGKVTFFSR----T 57 Query: 399 RGTVWKAKNPSGVFVPVENPVITRAGSDTQNPVITRAGSGTQHVDN----RPGKSFRSFR 232 + +W SG F+ V N + +DT ++ G T H+ N P S SF Sbjct: 58 KQRLWTKGESSGHFLNVVN-IYPDCDNDTLLILVKPIGP-TCHLGNSSCFAPAASDWSFL 115 Query: 231 FDTASILQS 205 + +L S Sbjct: 116 YQLEQLLAS 124
>NANEK_BRUSU (Q8FWN5) NanE/nanK bifunctional enzyme [Includes: Putative| N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) (ManNAc-6-P epimerase); Putative N-acetylmannosamine kinase (EC 2.7.1.60) (ManNAc kinase)] Length = 525 Score = 29.6 bits (65), Expect = 7.9 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 10/71 (14%) Frame = -3 Query: 483 MVAPFLTGLKAWIGTHRSPV------YQKSDTSTRGTV----WKAKNPSGVFVPVENPVI 334 M P G ++WIG S YQ++ + G V W + NP + +P + P+ Sbjct: 270 MTTPASVGSESWIGAIASLSADWQGRYQRAAIAVTGRVDGEIWSSLNPETLAIPPDYPLG 329 Query: 333 TRAGSDTQNPV 301 R G+ PV Sbjct: 330 RRMGAALGAPV 340
>PHSL1_SOLTU (P04045) Alpha-1,4 glucan phosphorylase, L-1 isozyme, chloroplast| precursor (EC 2.4.1.1) (Starch phosphorylase L-1) Length = 966 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = -3 Query: 240 SFRFDTASILQSID--ASFLRT*DPDRSSTPVPLMCIDYGMMSSLVVNWN 97 SF D ASI SI A F P+R P + SL++NWN Sbjct: 71 SFAPDAASITSSIKYHAEFTPVFSPERFELPKAFFATAQSVRDSLLINWN 120
>NANEK_BRUME (Q8YBP2) NanE/nanK bifunctional enzyme [Includes: Putative| N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) (ManNAc-6-P epimerase); Putative N-acetylmannosamine kinase (EC 2.7.1.60) (ManNAc kinase)] Length = 518 Score = 29.6 bits (65), Expect = 7.9 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 10/71 (14%) Frame = -3 Query: 483 MVAPFLTGLKAWIGTHRSPV------YQKSDTSTRGTV----WKAKNPSGVFVPVENPVI 334 M P G ++WIG S YQ++ + G V W + NP + +P + P+ Sbjct: 263 MTTPASVGSESWIGAIASLSADWQGRYQRAAIAVTGRVDGEIWSSLNPETLAIPPDYPLG 322 Query: 333 TRAGSDTQNPV 301 R G+ PV Sbjct: 323 RRMGAALGAPV 333
>NET4_PONPY (Q5RB89) Netrin-4 precursor| Length = 628 Score = 29.6 bits (65), Expect = 7.9 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +2 Query: 431 DRCVPIHAFRPVKNGAT 481 D+C+P+H FRPVK T Sbjct: 269 DQCIPVHGFRPVKAPGT 285
>NET4_HUMAN (Q9HB63) Netrin-4 precursor (Beta-netrin) (Hepar-derived| netrin-like protein) Length = 628 Score = 29.6 bits (65), Expect = 7.9 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +2 Query: 431 DRCVPIHAFRPVKNGAT 481 D+C+P+H FRPVK T Sbjct: 269 DQCIPVHGFRPVKAPGT 285 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,559,576 Number of Sequences: 219361 Number of extensions: 1712262 Number of successful extensions: 5436 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5312 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5432 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
