ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10h20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066208.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 1e-42
2gb|AC092388.5| Oryza sativa chromosome 10 BAC OSJNBa0011L09 geno... 82 3e-12
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 82 3e-12
5ref|NM_196313.1| Oryza sativa (japonica cultivar-group) putative... 46 0.15
6ref|XM_632930.1| Dictyostelium discoideum hypothetical protein (... 44 0.60
7gb|AC101852.7| Mus musculus chromosome 1, clone RP23-279P3, comp... 44 0.60
8emb|AL359694.17| Human DNA sequence from clone RP11-524C21 on ch... 44 0.60
9gb|AC158962.4| Mus musculus chromosome 1, clone RP23-443N21, com... 44 0.60
10emb|AL158052.10| Human DNA sequence from clone RP11-570J20 on ch... 42 2.4
11emb|CT009616.17| Zebrafish DNA sequence from clone CH211-37A16 i... 42 2.4
12ref|XM_633099.1| Dictyostelium discoideum putative CAM kinase (D... 40 9.3
13ref|XM_633715.1| Dictyostelium discoideum hypothetical protein (... 40 9.3
14gb|AC163996.6| Mus musculus chromosome 8, clone RP23-6B9, comple... 40 9.3
15gb|BC080087.1| Xenopus laevis MGC84212 protein, mRNA (cDNA clone... 40 9.3
16ref|XM_418542.1| PREDICTED: Gallus gallus similar to Myeloid/lym... 40 9.3
17gb|AC068459.9| Mus musculus chromosome 12, clone RP23-158M23, co... 40 9.3
18emb|CR753839.12| Zebrafish DNA sequence from clone CH211-12K18 i... 40 9.3
19gb|DQ485452.1| Homo sapiens protein kinase D1 (PRKD1) gene, comp... 40 9.3
20ref|XM_665385.1| Plasmodium berghei strain ANKA hypothetical pro... 40 9.3
21ref|XM_795376.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 9.3
22gb|AC165290.2| Mus musculus BAC clone RP23-343A4 from chromosome... 40 9.3
23gb|AC141480.4| Mus musculus BAC clone RP23-210I6 from chromosome... 40 9.3
24emb|CR392335.5| Zebrafish DNA sequence from clone CH211-161C21 i... 40 9.3
25gb|AC010345.6| Homo sapiens chromosome 5 clone CTD-2017K17, comp... 40 9.3
26gb|AC079845.31| Mus musculus clone rp23-461a12, complete sequence 40 9.3
27gb|AC092353.2| Homo sapiens chromosome 5 clone RP11-305P14, comp... 40 9.3
28gb|AC147482.2| Medicago truncatula chromosome 7 BAC clone mth2-9... 40 9.3
29emb|BX323811.14| Zebrafish DNA sequence from clone DKEY-234H16 i... 40 9.3
30gb|AC013727.7| Homo sapiens BAC clone RP11-451G1 from 2, complet... 40 9.3
31gb|AC110921.9| Homo sapiens chromosome 17, clone CTD-2653B5, com... 40 9.3
32dbj|BS000211.1| Pan troglodytes chromosome 22 clone:PTB-017A17, ... 40 9.3
33dbj|AP001697.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 9.3
34gb|AC079832.18| Mus musculus strain C57BL/6J chromosome 3 clone ... 40 9.3
35gb|AC161446.3| Mus musculus BAC clone RP24-260B15 from chromosom... 40 9.3
36emb|AL807375.14| Mouse DNA sequence from clone RP23-247H23 on ch... 40 9.3
37gb|AC158526.3| Mus musculus BAC clone RP23-288A9 from chromosome... 40 9.3
38emb|AL355053.4|CNS05TC5 Human chromosome 14 DNA sequence BAC C-2... 40 9.3
39dbj|AP001598.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 9.3 
>dbj|AK066208.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058D12, full
            insert sequence
          Length = 1984

 Score =  182 bits (92), Expect = 1e-42
 Identities = 146/164 (89%)
 Strand = Plus / Minus

                                                                        
Query: 507  acttccatctcatcatatgagtccctctggccctttagaactcttggtctgtcattgact 566
            ||||||||||| || |||||||||||| |   ||| | ||| |||||||||||||||| |
Sbjct: 1383 acttccatctcgtcgtatgagtccctccgattcttcaaaacccttggtctgtcattgatt 1324

                                                                        
Query: 567  atttctaggacctctggtctcgaatgcagtacaccataagacatgcccacatcaacacac 626
            ||||||||||||||||| || ||||  || ||||||||||||||||||||||||||||||
Sbjct: 1323 atttctaggacctctggccttgaatagagaacaccataagacatgcccacatcaacacac 1264

                                                        
Query: 627  caaactttaccatcacatttgcaattcactccacgagtctgggg 670
            ||||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 1263 caaaccttgccatcgcatttgcaattcactccacgagtctgggg 1220
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>gb|AC092388.5| Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete
              sequence
          Length = 177565

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                          
Query: 576    acctctggtctcgaatgcagtacaccataagacatgcccacatcaacacaccaaacttta 635
              |||||||| || ||||  || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 128112 acctctggccttgaatagagaacaccataagacatgcccacatcaacacaccaaaccttg 128053

                           
Query: 636    ccatcacatttgc 648
              ||||| |||||||
Sbjct: 128052 ccatcgcatttgc 128040



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                          
Query: 507    acttccatctcatcatatgagtccctctggccctttagaactcttggtctgtcattgact 566
              ||||||||||| || |||||||||||| |   ||| | ||| |||||||||||||||| |
Sbjct: 128550 acttccatctcgtcgtatgagtccctccgattcttcaaaacccttggtctgtcattgatt 128491

                           
Query: 567    atttctaggacct 579
              |||||||||||||
Sbjct: 128490 atttctaggacct 128478



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 648    caattcactccacgagtctgggg 670
              |||||||||||||||||||||||
Sbjct: 127960 caattcactccacgagtctgggg 127938
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                            
Query: 576      acctctggtctcgaatgcagtacaccataagacatgcccacatcaacacaccaaacttta 635
                |||||||| || ||||  || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 12635450 acctctggccttgaatagagaacaccataagacatgcccacatcaacacaccaaaccttg 12635509

                             
Query: 636      ccatcacatttgc 648
                ||||| |||||||
Sbjct: 12635510 ccatcgcatttgc 12635522



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                            
Query: 507      acttccatctcatcatatgagtccctctggccctttagaactcttggtctgtcattgact 566
                ||||||||||| || |||||||||||| |   ||| | ||| |||||||||||||||| |
Sbjct: 12635012 acttccatctcgtcgtatgagtccctccgattcttcaaaacccttggtctgtcattgatt 12635071

                             
Query: 567      atttctaggacct 579
                |||||||||||||
Sbjct: 12635072 atttctaggacct 12635084



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 648      caattcactccacgagtctgggg 670
                |||||||||||||||||||||||
Sbjct: 12635602 caattcactccacgagtctgggg 12635624
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                            
Query: 576      acctctggtctcgaatgcagtacaccataagacatgcccacatcaacacaccaaacttta 635
                |||||||| || ||||  || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 12642790 acctctggccttgaatagagaacaccataagacatgcccacatcaacacaccaaaccttg 12642849

                             
Query: 636      ccatcacatttgc 648
                ||||| |||||||
Sbjct: 12642850 ccatcgcatttgc 12642862



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                            
Query: 507      acttccatctcatcatatgagtccctctggccctttagaactcttggtctgtcattgact 566
                ||||||||||| || |||||||||||| |   ||| | ||| |||||||||||||||| |
Sbjct: 12642352 acttccatctcgtcgtatgagtccctccgattcttcaaaacccttggtctgtcattgatt 12642411

                             
Query: 567      atttctaggacct 579
                |||||||||||||
Sbjct: 12642412 atttctaggacct 12642424



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 648      caattcactccacgagtctgggg 670
                |||||||||||||||||||||||
Sbjct: 12642942 caattcactccacgagtctgggg 12642964
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>ref|NM_196313.1| Oryza sativa (japonica cultivar-group) putative
            protein-tyrosine-phosphatase (OSJNBa0011L09.21), mRNA
          Length = 1134

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 648  caattcactccacgagtctgggg 670
            |||||||||||||||||||||||
Sbjct: 1109 caattcactccacgagtctgggg 1087
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>ref|XM_632930.1| Dictyostelium discoideum hypothetical protein (DDB0218761), partial
            mRNA
          Length = 3096

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 44   taaatctttaacatcatcaacatcat 69
            |||||| |||||||||||||||||||
Sbjct: 1062 taaatcattaacatcatcaacatcat 1087
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>gb|AC101852.7| Mus musculus chromosome 1, clone RP23-279P3, complete sequence
          Length = 185975

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 605    agacatgcccacatcaacacac 626
              ||||||||||||||||||||||
Sbjct: 141221 agacatgcccacatcaacacac 141200
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>emb|AL359694.17| Human DNA sequence from clone RP11-524C21 on chromosome 6 Contains a
             pseudogene similar to mesenchymal stem cell protein DSC92,
             complete sequence
          Length = 95369

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 633   ttaccatcacatttgcaattca 654
             ||||||||||||||||||||||
Sbjct: 66707 ttaccatcacatttgcaattca 66728
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>gb|AC158962.4| Mus musculus chromosome 1, clone RP23-443N21, complete sequence
          Length = 180337

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 605   agacatgcccacatcaacacac 626
             ||||||||||||||||||||||
Sbjct: 18564 agacatgcccacatcaacacac 18585
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>emb|AL158052.10| Human DNA sequence from clone RP11-570J20 on chromosome 9q33.1-34.12
              Contains three novel genes, the 3' end of the LHX2 gene for
              LIM homeobox protein 2 and four CpG islands, complete
              sequence
          Length = 221887

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 107    tgaaggccagttgagttgttggcaa 131
              |||||| ||||||||||||||||||
Sbjct: 135706 tgaaggacagttgagttgttggcaa 135730
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>emb|CT009616.17| Zebrafish DNA sequence from clone CH211-37A16 in linkage group 13,
             complete sequence
          Length = 77163

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 424   caaaactgtcttgtatagtat 444
             |||||||||||||||||||||
Sbjct: 61224 caaaactgtcttgtatagtat 61244
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>ref|XM_633099.1| Dictyostelium discoideum putative CAM kinase (DDB0216238), partial
           mRNA
          Length = 2148

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 43  ttaaatctttaacatcatca 62
           ||||||||||||||||||||
Sbjct: 889 ttaaatctttaacatcatca 870
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>ref|XM_633715.1| Dictyostelium discoideum hypothetical protein (DDB0185752), partial
           mRNA
          Length = 4350

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 46  aatctttaacatcatcaacatcat 69
           ||||||||||||||||| ||||||
Sbjct: 944 aatctttaacatcatcaccatcat 967
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>gb|AC163996.6| Mus musculus chromosome 8, clone RP23-6B9, complete sequence
          Length = 206641

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 510    tccatctcatcatatgagtc 529
              ||||||||||||||||||||
Sbjct: 145638 tccatctcatcatatgagtc 145619
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>gb|BC080087.1| Xenopus laevis MGC84212 protein, mRNA (cDNA clone MGC:84212
           IMAGE:6954900), complete cds
          Length = 2454

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 cttcactttctgatgaagac 245
           ||||||||||||||||||||
Sbjct: 546 cttcactttctgatgaagac 527
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>ref|XM_418542.1| PREDICTED: Gallus gallus similar to Myeloid/lymphoid or mixed-lineage
             leukemia protein 3 homolog (Histone-lysine
             N-methyltransferase, H3 lysine-4 specific MLL3)
             (Homologous to ALR protein) (LOC420437), mRNA
          Length = 18006

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   cagttgagttgttggcaaag 133
             ||||||||||||||||||||
Sbjct: 11946 cagttgagttgttggcaaag 11927
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>gb|AC068459.9| Mus musculus chromosome 12, clone RP23-158M23, complete sequence
          Length = 198494

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    aagtgaaatgcccatattgt 159
              ||||||||||||||||||||
Sbjct: 173887 aagtgaaatgcccatattgt 173868
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>emb|CR753839.12| Zebrafish DNA sequence from clone CH211-12K18 in linkage group 14,
             complete sequence
          Length = 169064

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 637   catcacatttgcaattcact 656
             ||||||||||||||||||||
Sbjct: 34031 catcacatttgcaattcact 34050
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>gb|DQ485452.1| Homo sapiens protein kinase D1 (PRKD1) gene, complete cds
          Length = 355200

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   atgttccttggctcatgagc 305
             ||||||||||||||||||||
Sbjct: 17779 atgttccttggctcatgagc 17760
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>ref|XM_665385.1| Plasmodium berghei strain ANKA hypothetical protein
          (PB104357.00.0) partial mRNA
          Length = 105

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 50 tttaacatcatcaacatcat 69
          ||||||||||||||||||||
Sbjct: 36 tttaacatcatcaacatcat 55
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>ref|XM_795376.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
            LOC587622 (LOC587622), mRNA
          Length = 1578

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   ctctcaacatcatagacggt 95
            ||||||||||||||||||||
Sbjct: 1519 ctctcaacatcatagacggt 1500
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>gb|AC165290.2| Mus musculus BAC clone RP23-343A4 from chromosome 13, complete sequence
          Length = 206249

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 256    taacagtgttgctgctcatgatgt 279
              ||||||||||||||||||| ||||
Sbjct: 149148 taacagtgttgctgctcataatgt 149171
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>gb|AC141480.4| Mus musculus BAC clone RP23-210I6 from chromosome 3, complete sequence
          Length = 209458

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     taacatcatcaacatcatga 71
              ||||||||||||||||||||
Sbjct: 137223 taacatcatcaacatcatga 137204
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>emb|CR392335.5| Zebrafish DNA sequence from clone CH211-161C21 in linkage group 1,
             complete sequence
          Length = 103171

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 637   catcacatttgcaattcact 656
             ||||||||||||||||||||
Sbjct: 10738 catcacatttgcaattcact 10757
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>gb|AC010345.6| Homo sapiens chromosome 5 clone CTD-2017K17, complete sequence
          Length = 102001

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   cacaactttactcctgttcc 203
             ||||||||||||||||||||
Sbjct: 11802 cacaactttactcctgttcc 11821
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>gb|AC079845.31| Mus musculus clone rp23-461a12, complete sequence
          Length = 206117

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    cagttgagttgttggcaaag 133
              ||||||||||||||||||||
Sbjct: 155471 cagttgagttgttggcaaag 155490
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>gb|AC092353.2| Homo sapiens chromosome 5 clone RP11-305P14, complete sequence
          Length = 208660

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    cacaactttactcctgttcc 203
              ||||||||||||||||||||
Sbjct: 128913 cacaactttactcctgttcc 128932
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>gb|AC147482.2| Medicago truncatula chromosome 7 BAC clone mth2-93e11, complete
             sequence
          Length = 119127

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    tttaacatcatcaacatcat 69
             ||||||||||||||||||||
Sbjct: 57887 tttaacatcatcaacatcat 57868
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>emb|BX323811.14| Zebrafish DNA sequence from clone DKEY-234H16 in linkage group 5,
              complete sequence
          Length = 204094

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 613    ccacatcaacacaccaaactttac 636
              |||| |||||||||||||||||||
Sbjct: 122845 ccacttcaacacaccaaactttac 122868
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>gb|AC013727.7| Homo sapiens BAC clone RP11-451G1 from 2, complete sequence
          Length = 167519

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 444    tcttttccagtaaaatgctggcta 467
              |||||| |||||||||||||||||
Sbjct: 138860 tcttttgcagtaaaatgctggcta 138837
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>gb|AC110921.9| Homo sapiens chromosome 17, clone CTD-2653B5, complete sequence
          Length = 240058

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    atgagcaaactgatactttg 319
              ||||||||||||||||||||
Sbjct: 155867 atgagcaaactgatactttg 155886
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>dbj|BS000211.1| Pan troglodytes chromosome 22 clone:PTB-017A17, map 22, complete
             sequences
          Length = 129385

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 490   ttcataaatagtccaacact 509
             ||||||||||||||||||||
Sbjct: 79089 ttcataaatagtccaacact 79070
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>dbj|AP001697.1| Homo sapiens genomic DNA, chromosome 21q, section 41/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 490    ttcataaatagtccaacact 509
              ||||||||||||||||||||
Sbjct: 147533 ttcataaatagtccaacact 147514
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>gb|AC079832.18| Mus musculus strain C57BL/6J chromosome 3 clone rp23-393j8, complete
              sequence
          Length = 194354

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    cagttgagttgttggcaaag 133
              ||||||||||||||||||||
Sbjct: 155303 cagttgagttgttggcaaag 155322
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>gb|AC161446.3| Mus musculus BAC clone RP24-260B15 from chromosome 13, complete
             sequence
          Length = 181988

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 256   taacagtgttgctgctcatgatgt 279
             ||||||||||||||||||| ||||
Sbjct: 42129 taacagtgttgctgctcataatgt 42152
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>emb|AL807375.14| Mouse DNA sequence from clone RP23-247H23 on chromosome X, complete
              sequence
          Length = 143779

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 509    ttccatctcatcatatgagt 528
              ||||||||||||||||||||
Sbjct: 104688 ttccatctcatcatatgagt 104707
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>gb|AC158526.3| Mus musculus BAC clone RP23-288A9 from chromosome 12, complete sequence
          Length = 236362

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    aagtgaaatgcccatattgt 159
              ||||||||||||||||||||
Sbjct: 202660 aagtgaaatgcccatattgt 202679
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>emb|AL355053.4|CNS05TC5 Human chromosome 14 DNA sequence BAC C-2305P23 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 125977

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   atgttccttggctcatgagc 305
             ||||||||||||||||||||
Sbjct: 43088 atgttccttggctcatgagc 43069
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>dbj|AP001598.1| Homo sapiens genomic DNA, chromosome 21, clone:KB2043D3, APP-D21S292
             region, complete sequence
          Length = 171038

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 490   ttcataaatagtccaacact 509
             ||||||||||||||||||||
Sbjct: 81552 ttcataaatagtccaacact 81533


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,638,779
Number of Sequences: 3902068
Number of extensions: 6638779
Number of successful extensions: 121990
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121812
Number of HSP's gapped (non-prelim): 174
length of query: 681
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 658
effective length of database: 17,143,297,704
effective search space: 11280289889232
effective search space used: 11280289889232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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