ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal10h18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103D10, full insert sequence Length = 2549 Score = 149 bits (75), Expect = 7e-33 Identities = 108/119 (90%) Strand = Plus / Minus Query: 239 tggtgaggatgactgtgaatgtctccctggttctccaggggcatgtactgcgccatgatg 298 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 2114 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 2055 Query: 299 gcgcggatctctgaatccatgtacctccggatccgatacttgtacactgcgtatcctgc 357 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 2054 gcgcggatctctgaatccatgtacctccggatcctgtacttgtatactgcgtatcctgc 1996
>dbj|AK066617.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073B02, full insert sequence Length = 2553 Score = 149 bits (75), Expect = 7e-33 Identities = 108/119 (90%) Strand = Plus / Minus Query: 239 tggtgaggatgactgtgaatgtctccctggttctccaggggcatgtactgcgccatgatg 298 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 2175 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 2116 Query: 299 gcgcggatctctgaatccatgtacctccggatccgatacttgtacactgcgtatcctgc 357 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 2115 gcgcggatctctgaatccatgtacctccggatcctgtacttgtatactgcgtatcctgc 2057
>gb|AY110802.1| Zea mays CL50258_1 mRNA sequence Length = 661 Score = 135 bits (68), Expect = 1e-28 Identities = 116/132 (87%) Strand = Plus / Plus Query: 226 tcacatctcaatctggtgaggatgactgtgaatgtctccctggttctccaggggcatgta 285 |||||||||||| || |||| ||| || || | |||||| ||||| |||||||||||||| Sbjct: 223 tcacatctcaatgtgatgagaatggctctggacgtctccttggttgtccaggggcatgta 282 Query: 286 ctgcgccatgatggcgcggatctctgaatccatgtacctccggatccgatacttgtacac 345 ||| ||||||||||| |||||||| || ||||||||||||||||||| ||||||||||| Sbjct: 283 ctgagccatgatggcacggatctcggagtccatgtacctccggatcctgtacttgtacac 342 Query: 346 tgcgtatcctgc 357 ||| |||||||| Sbjct: 343 tgcatatcctgc 354
>gb|AC123514.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence Length = 121223 Score = 109 bits (55), Expect = 6e-21 Identities = 79/87 (90%) Strand = Plus / Plus Query: 239 tggtgaggatgactgtgaatgtctccctggttctccaggggcatgtactgcgccatgatg 298 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 20529 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 20588 Query: 299 gcgcggatctctgaatccatgtacctc 325 ||||||||||||||||||||||||||| Sbjct: 20589 gcgcggatctctgaatccatgtacctc 20615
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 109 bits (55), Expect = 6e-21 Identities = 79/87 (90%) Strand = Plus / Plus Query: 239 tggtgaggatgactgtgaatgtctccctggttctccaggggcatgtactgcgccatgatg 298 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 782975 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 783034 Query: 299 gcgcggatctctgaatccatgtacctc 325 ||||||||||||||||||||||||||| Sbjct: 783035 gcgcggatctctgaatccatgtacctc 783061 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 325 ccggatccgatacttgtacactgcgtatcctgc 357 |||||||| |||||||| |||||||||||||| Sbjct: 783161 ccggatcctgtacttgtatactgcgtatcctgc 783193
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 109 bits (55), Expect = 6e-21 Identities = 79/87 (90%) Strand = Plus / Plus Query: 239 tggtgaggatgactgtgaatgtctccctggttctccaggggcatgtactgcgccatgatg 298 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 742236 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 742295 Query: 299 gcgcggatctctgaatccatgtacctc 325 ||||||||||||||||||||||||||| Sbjct: 742296 gcgcggatctctgaatccatgtacctc 742322
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 109 bits (55), Expect = 6e-21 Identities = 79/87 (90%) Strand = Plus / Plus Query: 239 tggtgaggatgactgtgaatgtctccctggttctccaggggcatgtactgcgccatgatg 298 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 742238 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 742297 Query: 299 gcgcggatctctgaatccatgtacctc 325 ||||||||||||||||||||||||||| Sbjct: 742298 gcgcggatctctgaatccatgtacctc 742324
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 109 bits (55), Expect = 6e-21 Identities = 79/87 (90%) Strand = Plus / Plus Query: 239 tggtgaggatgactgtgaatgtctccctggttctccaggggcatgtactgcgccatgatg 298 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 782975 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 783034 Query: 299 gcgcggatctctgaatccatgtacctc 325 ||||||||||||||||||||||||||| Sbjct: 783035 gcgcggatctctgaatccatgtacctc 783061 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 325 ccggatccgatacttgtacactgcgtatcctgc 357 |||||||| |||||||| |||||||||||||| Sbjct: 783161 ccggatcctgtacttgtatactgcgtatcctgc 783193
>emb|BX842244.3|CNS0B0PN Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0006G23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 12281 Score = 109 bits (55), Expect = 6e-21 Identities = 79/87 (90%) Strand = Plus / Plus Query: 239 tggtgaggatgactgtgaatgtctccctggttctccaggggcatgtactgcgccatgatg 298 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 4747 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 4806 Query: 299 gcgcggatctctgaatccatgtacctc 325 ||||||||||||||||||||||||||| Sbjct: 4807 gcgcggatctctgaatccatgtacctc 4833 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 325 ccggatccgatacttgtacactgcgtatcctgc 357 |||||||| |||||||| |||||||||||||| Sbjct: 4933 ccggatcctgtacttgtatactgcgtatcctgc 4965
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 109 bits (55), Expect = 6e-21 Identities = 79/87 (90%) Strand = Plus / Minus Query: 239 tggtgaggatgactgtgaatgtctccctggttctccaggggcatgtactgcgccatgatg 298 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 736 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 677 Query: 299 gcgcggatctctgaatccatgtacctc 325 ||||||||||||||||||||||||||| Sbjct: 676 gcgcggatctctgaatccatgtacctc 650
>gb|AY104972.1| Zea mays PCO068557 mRNA sequence Length = 1725 Score = 107 bits (54), Expect = 2e-20 Identities = 78/86 (90%) Strand = Plus / Minus Query: 272 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctccggatc 331 ||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||||| Sbjct: 1516 tccagaggcatgtactgggccatgatggcgcggatctccgagtccatgtacctccggatc 1457 Query: 332 cgatacttgtacactgcgtatcctgc 357 | ||||||||||| ||||| ||||| Sbjct: 1456 ctgtacttgtacaccgcgtaccctgc 1431
>gb|BT017302.1| Zea mays clone EL01N0316C05.c mRNA sequence Length = 622 Score = 103 bits (52), Expect = 4e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctccggatccgatac 337 ||||||||||| |||||||||||||||||||| || ||||||||||||||||||| ||| Sbjct: 246 ggcatgtactgggccatgatggcgcggatctccgagtccatgtacctccggatcctgtac 187 Query: 338 ttgtacactgcgtatcctgc 357 |||||||| ||||| ||||| Sbjct: 186 ttgtacaccgcgtaccctgc 167
>gb|AY105262.1| Zea mays PCO087823 mRNA sequence Length = 1974 Score = 85.7 bits (43), Expect = 9e-14 Identities = 76/87 (87%) Strand = Plus / Minus Query: 266 tggttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctc 325 ||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct: 1505 tggttatccagaggcatgtactgagccatgatggcacggatctctgaatccatgtaactc 1446 Query: 326 cggatccgatacttgtacactgcgtat 352 || | || || |||||||| |||||| Sbjct: 1445 cgcagcctgtatttgtacacagcgtat 1419
>gb|U79961.1|ZMU79961 Zea mays vacuolar sorting receptor homolog mRNA, partial cds Length = 822 Score = 85.7 bits (43), Expect = 9e-14 Identities = 76/87 (87%) Strand = Plus / Minus Query: 266 tggttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctc 325 ||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct: 413 tggttatccagaggcatgtactgagccatgatggcacggatctctgaatccatgtaactc 354 Query: 326 cggatccgatacttgtacactgcgtat 352 || | || || |||||||| |||||| Sbjct: 353 cgcagcctgtatttgtacacagcgtat 327
>ref|XM_479541.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2450 Score = 83.8 bits (42), Expect = 4e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 269 ttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctccgg 328 |||||||||||||||||||| |||||||| || || ||||||||||||||||| ||||| Sbjct: 2028 ttctccaggggcatgtactgagccatgatcgcacgaatctctgaatccatgtaactccgt 1969 Query: 329 atccgatacttgta 342 | |||||| ||||| Sbjct: 1968 agccgatatttgta 1955
>dbj|AK072667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134F15, full insert sequence Length = 2450 Score = 83.8 bits (42), Expect = 4e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 269 ttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctccgg 328 |||||||||||||||||||| |||||||| || || ||||||||||||||||| ||||| Sbjct: 2028 ttctccaggggcatgtactgagccatgatcgcacgaatctctgaatccatgtaactccgt 1969 Query: 329 atccgatacttgta 342 | |||||| ||||| Sbjct: 1968 agccgatatttgta 1955
>gb|AF161719.1|AF161719 Triticum aestivum vacuolar targeting receptor bp-80 mRNA, complete cds Length = 2293 Score = 77.8 bits (39), Expect = 2e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctccggatccgatac 337 ||||||||||| |||||||||||||||||||| ||||||||||| ||||| | || || Sbjct: 1874 ggcatgtactgagccatgatggcgcggatctccgaatccatgtaactccgtagcctgtat 1815 Query: 338 ttgtacactgc 348 ||||||||||| Sbjct: 1814 ttgtacactgc 1804
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 73.8 bits (37), Expect = 3e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 269 ttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 |||||||||||||||||||| |||||||| || || ||||||||||||||||| Sbjct: 28756380 ttctccaggggcatgtactgagccatgatcgcacgaatctctgaatccatgta 28756432
>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1205_F02 Length = 112862 Score = 73.8 bits (37), Expect = 3e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 269 ttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 |||||||||||||||||||| |||||||| || || ||||||||||||||||| Sbjct: 63941 ttctccaggggcatgtactgagccatgatcgcacgaatctctgaatccatgta 63993
>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0008J01 Length = 159900 Score = 73.8 bits (37), Expect = 3e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 269 ttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 |||||||||||||||||||| |||||||| || || ||||||||||||||||| Sbjct: 14066 ttctccaggggcatgtactgagccatgatcgcacgaatctctgaatccatgta 14118
>gb|DQ294283.1| Solanum tuberosum clone 131D12 vacuolar sorting receptor protein PV72-like protein mRNA, complete cds Length = 2269 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 290 gccatgatggcgcggatctctgaatccatgtacctccggatccgatacttgtacac 345 ||||||||||| || |||||||| |||||||| |||||||| | |||||||||||| Sbjct: 1938 gccatgatggcacgaatctctgagtccatgtatctccggattctatacttgtacac 1883
>dbj|AB006809.1| Cucurbita cv. Kurokawa Amakuri mRNA for PV72, complete cds Length = 2190 Score = 61.9 bits (31), Expect = 1e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 260 tctccctggttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatg 319 ||||| ||||| |||| |||||| || || ||||||||||| || ||||| |||||||| Sbjct: 1879 tctccttggttgtccaagggcatatattgagccatgatggcccgtatctccgaatccata 1820 Query: 320 tacctccggat 330 ||||||||||| Sbjct: 1819 tacctccggat 1809
>dbj|AK121413.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133A05, full insert sequence Length = 2546 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctccg 327 ||||||||||| |||||||| ||||| ||||| ||||||||||| ||||| Sbjct: 2122 ggcatgtactgggccatgatcgcgcgaatctccgaatccatgtagctccg 2073
>dbj|AK111509.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001G14, full insert sequence Length = 2546 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctccg 327 ||||||||||| |||||||| ||||| ||||| ||||||||||| ||||| Sbjct: 2122 ggcatgtactgggccatgatcgcgcgaatctccgaatccatgtagctccg 2073
>dbj|AK098891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001M02, full insert sequence Length = 2508 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctccg 327 ||||||||||| |||||||| ||||| ||||| ||||||||||| ||||| Sbjct: 2085 ggcatgtactgggccatgatcgcgcgaatctccgaatccatgtagctccg 2036
>dbj|AK098846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000C17, full insert sequence Length = 2527 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctccg 327 ||||||||||| |||||||| ||||| ||||| ||||||||||| ||||| Sbjct: 2074 ggcatgtactgggccatgatcgcgcgaatctccgaatccatgtagctccg 2025
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 12381145 ggcatgtactgggccatgatcgcgcgaatctccgaatccatgta 12381102
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 40163 ggcatgtactgggccatgatcgcgcgaatctccgaatccatgta 40120
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 12377908 ggcatgtactgggccatgatcgcgcgaatctccgaatccatgta 12377865
>dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47L09, TM0218, complete sequence Length = 113213 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 272 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccat 318 |||| |||||||||||| ||||||||||| | ||| ||||||||||| Sbjct: 50885 tccaagggcatgtactgtgccatgatggctctgatttctgaatccat 50839
>ref|NM_179623.1| Arabidopsis thaliana VSR-2; calcium ion binding / peptidase AT2G14720 (VSR-2) transcript variant AT2G14720.2 mRNA, complete cds Length = 2325 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 272 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 1962 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 1913
>ref|NM_127036.3| Arabidopsis thaliana VSR-2; calcium ion binding / peptidase AT2G14720 (VSR-2) transcript variant AT2G14720.1 mRNA, complete cds Length = 2371 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 272 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 2008 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 1959
>gb|BT008390.1| Arabidopsis thaliana At2g14720 gene, complete cds Length = 1887 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 272 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 1841 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 1792
>gb|AC005398.3| Arabidopsis thaliana chromosome 2 clone T6B13 map mi398, complete sequence Length = 92524 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 272 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 13956 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 13907 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Plus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 2629 ggcatgtactgtgccattatggctctgatctctgagtccatgta 2672
>gb|AC004705.3| Arabidopsis thaliana chromosome 2 clone F26C24 map mi398, complete sequence Length = 89840 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 272 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 87328 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 87279 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Plus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 76001 ggcatgtactgtgccattatggctctgatctctgagtccatgta 76044
>gb|AY062744.1| Arabidopsis thaliana putative vacuolar sorting receptor (At2g14720; F26C24.14) mRNA, complete cds Length = 2281 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 272 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 2008 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 1959
>dbj|AK220910.1| Arabidopsis thaliana mRNA for putative vacuolar sorting receptor, complete cds, clone: RAFL22-47-H22 Length = 505 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 272 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 199 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 150
>gb|U79960.1|ATU79960 Arabidopsis thaliana vacuolar sorting receptor homolog mRNA, complete cds Length = 2290 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 272 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 1979 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 1930
>ref|NM_179624.1| Arabidopsis thaliana calcium ion binding / peptidase AT2G14740 transcript variant AT2G14740.2 mRNA, complete cds Length = 2080 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 1835 ggcatgtactgtgccattatggctctgatctctgagtccatgta 1792
>ref|NM_127038.1| Arabidopsis thaliana calcium ion binding / peptidase AT2G14740 transcript variant AT2G14740.1 mRNA, complete cds Length = 2173 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 1835 ggcatgtactgtgccattatggctctgatctctgagtccatgta 1792
>gb|AY017377.1| Physcomitrella patens EGF receptor-like protein (ELP) mRNA, partial cds Length = 1543 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||||||||| ||||| || || || ||||||||||||||||| Sbjct: 1029 ggcatgtactgagccataatcgctcgaatctctgaatccatgta 986
>ref|NM_195907.1| Oryza sativa (japonica cultivar-group) putative vacuolar sorting receptor protein (OSJNBb0078C13.14), mRNA Length = 1932 Score = 44.1 bits (22), Expect = 0.31 Identities = 43/50 (86%) Strand = Plus / Minus Query: 272 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||| ||||||||||| |||||||| || | |||||| || |||||||| Sbjct: 1883 tccagtggcatgtactgtgccatgattgctctgatctcagagtccatgta 1834
>gb|AC091666.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0078C13, complete sequence Length = 140553 Score = 44.1 bits (22), Expect = 0.31 Identities = 43/50 (86%) Strand = Plus / Minus Query: 272 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||| ||||||||||| |||||||| || | |||||| || |||||||| Sbjct: 137617 tccagtggcatgtactgtgccatgattgctctgatctcagagtccatgta 137568
>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045C13, from Chromosome 10, complete sequence Length = 161250 Score = 44.1 bits (22), Expect = 0.31 Identities = 43/50 (86%) Strand = Plus / Plus Query: 272 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||| ||||||||||| |||||||| || | |||||| || |||||||| Sbjct: 128817 tccagtggcatgtactgtgccatgattgctctgatctcagagtccatgta 128866
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.31 Identities = 43/50 (86%) Strand = Plus / Plus Query: 272 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||| ||||||||||| |||||||| || | |||||| || |||||||| Sbjct: 9896338 tccagtggcatgtactgtgccatgattgctctgatctcagagtccatgta 9896387
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.31 Identities = 43/50 (86%) Strand = Plus / Plus Query: 272 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||| ||||||||||| |||||||| || | |||||| || |||||||| Sbjct: 9902377 tccagtggcatgtactgtgccatgattgctctgatctcagagtccatgta 9902426
>ref|XM_473856.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1992 Score = 42.1 bits (21), Expect = 1.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctcc 326 ||||||||||||| |||||| || | |||||||||||||||||||| Sbjct: 1835 ggcatgtactgcgacatgatcgccatcacctctgaatccatgtacctcc 1787
>dbj|AK105614.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B09, full insert sequence Length = 2305 Score = 42.1 bits (21), Expect = 1.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctcc 326 ||||||||||||| |||||| || | |||||||||||||||||||| Sbjct: 1932 ggcatgtactgcgacatgatcgccatcacctctgaatccatgtacctcc 1884
>dbj|AK069344.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010O14, full insert sequence Length = 2254 Score = 42.1 bits (21), Expect = 1.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctcc 326 ||||||||||||| |||||| || | |||||||||||||||||||| Sbjct: 1881 ggcatgtactgcgacatgatcgccatcacctctgaatccatgtacctcc 1833
>gb|AC123624.13| Mus musculus chromosome 16, clone RP23-133E12, complete sequence Length = 214202 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 taatctagaaatttacagaacggt 136 |||||||||||||| ||||||||| Sbjct: 27434 taatctagaaattttcagaacggt 27411
>gb|AC117647.12| Mus musculus chromosome 16, clone RP23-244M7, complete sequence Length = 186115 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 taatctagaaatttacagaacggt 136 |||||||||||||| ||||||||| Sbjct: 45113 taatctagaaattttcagaacggt 45136
>ref|XM_580994.2| PREDICTED: Bos taurus similar to nexilin (LOC504819), mRNA Length = 2745 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cggcgttgctcttcacatct 233 |||||||||||||||||||| Sbjct: 458 cggcgttgctcttcacatct 439
>gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0079L11, complete sequence Length = 124104 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tgaatgtctccctggttctc 273 |||||||||||||||||||| Sbjct: 40183 tgaatgtctccctggttctc 40202
>gb|BT013566.1| Lycopersicon esculentum clone 132304F, mRNA sequence Length = 2395 Score = 40.1 bits (20), Expect = 4.8 Identities = 38/44 (86%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 321 ||||||||||||| ||||||||| |||||||| |||||||| Sbjct: 2007 ggcatgtactgcgacatgatggccataatctctgagtccatgta 1964
>emb|AJ012166.1|CFA012166 Canis familiaris TCTA gene, AMT gene, NICN1 gene, DAG1 gene and BSN gene (partial) Length = 162073 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 ctatgtcctggcacaaacatctct 58 |||||| ||||||||||||||||| Sbjct: 5505 ctatgttctggcacaaacatctct 5528
>gb|AC142230.3| Homo sapiens fosmid clone XXFOS-87252A6 from 7, complete sequence Length = 26013 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 gcacttttgggtgattaata 114 |||||||||||||||||||| Sbjct: 21562 gcacttttgggtgattaata 21581
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 40.1 bits (20), Expect = 4.8 Identities = 41/48 (85%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctc 325 ||||||||||||| |||||| || | ||||||||||||||||||| Sbjct: 23027 ggcatgtactgcgacatgatcgccatcacctctgaatccatgtacctc 22980
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 40.1 bits (20), Expect = 4.8 Identities = 41/48 (85%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctc 325 ||||||||||||| |||||| || | ||||||||||||||||||| Sbjct: 138320 ggcatgtactgcgacatgatcgccatcacctctgaatccatgtacctc 138273
>gb|AC182113.1| Pan troglodytes BAC clone CH251-533C21 from chromosome unknown, complete sequence Length = 221601 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 acttttgggtgattaataat 116 |||||||||||||||||||| Sbjct: 202529 acttttgggtgattaataat 202548
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.8 Identities = 41/48 (85%) Strand = Plus / Minus Query: 278 ggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctc 325 ||||||||||||| |||||| || | ||||||||||||||||||| Sbjct: 31040947 ggcatgtactgcgacatgatcgccatcacctctgaatccatgtacctc 31040900
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tgaatgtctccctggttctc 273 |||||||||||||||||||| Sbjct: 1378521 tgaatgtctccctggttctc 1378540
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 ctgcgccatgatggcgcgga 305 |||||||||||||||||||| Sbjct: 5191600 ctgcgccatgatggcgcgga 5191581 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,447,511 Number of Sequences: 3902068 Number of extensions: 2447511 Number of successful extensions: 39457 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 39230 Number of HSP's gapped (non-prelim): 225 length of query: 361 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 339 effective length of database: 17,147,199,772 effective search space: 5812900722708 effective search space used: 5812900722708 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
