ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10h15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXOC1_DROME (Q9VVG4) Probable exocyst complex component 1 (Exocy... 30 1.6
2UNG_ACIAD (Q6F9Y2) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG) 28 5.9

>EXOC1_DROME (Q9VVG4) Probable exocyst complex component 1 (Exocyst complex|
           component Sec3)
          Length = 889

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +2

Query: 32  VVYPTTKQTYTPLTAVKVLIVLQSIEHDRADEQPSXDGREQRSXDR 169
           V+ PTTK T T L   K + + QSI        PS DG  Q+  DR
Sbjct: 528 VISPTTKNTQTTLEMEKAVDMTQSIISGAV--SPSGDGVPQKRIDR 571



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>UNG_ACIAD (Q6F9Y2) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 237

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 5/32 (15%)
 Frame = +2

Query: 32  VVYPTTKQTY-----TPLTAVKVLIVLQSIEH 112
           V+YP +KQ +     TPL+AVKV+I+ Q   H
Sbjct: 49  VIYPPSKQIFNALNTTPLSAVKVVILGQDPYH 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,897,480
Number of Sequences: 219361
Number of extensions: 368471
Number of successful extensions: 790
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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