ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CB024_HUMAN (Q9BV87) Protein C2orf24 31 1.1
2PKN3_MOUSE (Q8K045) Serine/threonine-protein kinase N3 (EC 2.7.1... 29 4.1
3CB024_PONPY (Q5R4U5) Protein C2orf24 homolog 29 4.1
4GRISA_PODAN (Q92258) GRISEA protein (MAC1 homolog) 28 7.0

>CB024_HUMAN (Q9BV87) Protein C2orf24|
          Length = 410

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 13  SPXPGLEDQAXATGCRMRPAAMPLPACLPSLXCIRSLMAVSM 138
           +P PG  D    + C + P    +P CLPS   + S +  SM
Sbjct: 262 TPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303



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>PKN3_MOUSE (Q8K045) Serine/threonine-protein kinase N3 (EC 2.7.11.13) (Protein|
           kinase PKN-beta) (Protein-kinase C-related kinase 3)
          Length = 878

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 7   KPSPXPG---LEDQAXATGCRMRPAAMPLPACLPSLXCI 114
           KP P P    L++ A  T C  RP   P PA +P+L  +
Sbjct: 499 KPPPKPPRLYLQEPAPGTPCTKRPHMDPRPAVVPALAAL 537



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>CB024_PONPY (Q5R4U5) Protein C2orf24 homolog|
          Length = 410

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 13  SPXPGLEDQAXATGCRMRPAAMPLPACLPSLXCIRSLM 126
           +P PG  D    + C + P    +P CLPS   + S +
Sbjct: 262 TPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCL 299



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>GRISA_PODAN (Q92258) GRISEA protein (MAC1 homolog)|
          Length = 597

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 57  PHETGRYAFAGLPPQPXLYPVLDGS 131
           PH  G  AF G PP P   PVL+ S
Sbjct: 238 PHPQGMQAFNGPPPPPPSNPVLEPS 262


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,989,707
Number of Sequences: 219361
Number of extensions: 307451
Number of successful extensions: 1096
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 80,573,946
effective HSP length: 23
effective length of database: 75,528,643
effective search space used: 1812687432
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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