ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_955695.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.11
2ref|XM_331357.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.11
3gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, com... 38 6.8
4gb|AC122249.4| Mus musculus BAC clone RP23-164F15 from 1, comple... 38 6.8
5gb|AC138028.1| Homo sapiens chromosome 16 clone RP5-1142A6, comp... 38 6.8
6emb|CT010508.10| Mouse DNA sequence from clone RP23-250G8 on chr... 38 6.8

>ref|XM_955695.1| Neurospora crassa OR74A hypothetical protein (NCU08966.1) partial
           mRNA
          Length = 3666

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 77  tgcctttgccggcctgcctccc 98
           ||||||||||||||||||||||
Sbjct: 264 tgcctttgccggcctgcctccc 285



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>ref|XM_331357.1| Neurospora crassa OR74A hypothetical protein (NCU08966.1) partial
           mRNA
          Length = 3666

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 77  tgcctttgccggcctgcctccc 98
           ||||||||||||||||||||||
Sbjct: 264 tgcctttgccggcctgcctccc 285



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>gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, complete sequence
          Length = 209825

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 77    tgcctttgccggcctgcctcccc 99
             |||||||||| ||||||||||||
Sbjct: 72323 tgcctttgcctgcctgcctcccc 72301



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>gb|AC122249.4| Mus musculus BAC clone RP23-164F15 from 1, complete sequence
          Length = 207471

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 77     tgcctttgccggcctgcctcccc 99
              |||||||||| ||||||||||||
Sbjct: 165099 tgcctttgcctgcctgcctcccc 165077



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>gb|AC138028.1| Homo sapiens chromosome 16 clone RP5-1142A6, complete sequence
          Length = 127698

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 84    gccggcctgcctccccagc 102
             |||||||||||||||||||
Sbjct: 91294 gccggcctgcctccccagc 91276



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>emb|CT010508.10| Mouse DNA sequence from clone RP23-250G8 on chromosome 9, complete
              sequence
          Length = 223547

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 21     acctggtctggaagatcag 39
              |||||||||||||||||||
Sbjct: 144288 acctggtctggaagatcag 144270


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 670,720
Number of Sequences: 3902068
Number of extensions: 670720
Number of successful extensions: 46455
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46445
Number of HSP's gapped (non-prelim): 10
length of query: 143
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 122
effective length of database: 17,151,101,840
effective search space: 2092434424480
effective search space used: 2092434424480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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