ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6g21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VASA_DROME (P09052) ATP-dependent RNA helicase vasa (EC 3.6.1.-)... 29 2.9
2VIPR2_MOUSE (P41588) Vasoactive intestinal polypeptide receptor ... 28 8.4

>VASA_DROME (P09052) ATP-dependent RNA helicase vasa (EC 3.6.1.-) (Antigen|
           Mab46F11)
          Length = 661

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +1

Query: 100 EHDRADEQPSRDGREQRSND---RLDRYEQGGVVRHEDDRGYGG 222
           E++  DE+  R  RE+R  +   RLDR E+GG      +RG GG
Sbjct: 134 ENEDGDERRGRLDREERGGERRGRLDREERGG---ERGERGDGG 174



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>VIPR2_MOUSE (P41588) Vasoactive intestinal polypeptide receptor 2 precursor|
           (VIP-R-2) (Pituitary adenylate cyclase-activating
           polypeptide type III receptor) (PACAP type III receptor)
           (PACAP-R-3)
          Length = 437

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 166 PDGRCYVVRGRLCWAVRRLCRARWTAGRLT 77
           P  RC++    + W +  +C   WTA RL+
Sbjct: 235 PPSRCFLAYLLIGWGIPSVCIGAWTATRLS 264


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,719,126
Number of Sequences: 219361
Number of extensions: 395168
Number of successful extensions: 1113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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