ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6g21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY107731.1| Zea mays PCO069957 mRNA sequence 58 1e-05
2gb|AC121874.2| Mus musculus BAC clone RP24-124K16 from 18, compl... 40 2.9
3emb|CR759903.8| Zebrafish DNA sequence from clone CH211-138E6 in... 40 2.9
4gb|AC137823.45| Medicago truncatula clone mth2-14c17, complete s... 40 2.9
5emb|BX088715.9| Zebrafish DNA sequence from clone CH211-194B1 in... 40 2.9
6gb|AC151523.4| Medicago truncatula chromosome 7 BAC clone mth2-1... 40 2.9
7emb|AL954845.21| Zebrafish DNA sequence from clone DKEY-30H3, co... 40 2.9

>gb|AY107731.1| Zea mays PCO069957 mRNA sequence
          Length = 925

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 86  tcctgcagtccatcgagcacgacagagccgacgaacagccc 126
           |||||||| ||| |||||||||||||||| |||||||||||
Sbjct: 653 tcctgcaggccagcgagcacgacagagcccacgaacagccc 613



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>gb|AC121874.2| Mus musculus BAC clone RP24-124K16 from 18, complete sequence
          Length = 164190

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    tatcctactacaaaacaaac 51
             ||||||||||||||||||||
Sbjct: 98457 tatcctactacaaaacaaac 98476



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>emb|CR759903.8| Zebrafish DNA sequence from clone CH211-138E6 in linkage group 9,
             complete sequence
          Length = 168689

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    actacaaaacaaacatatac 57
             ||||||||||||||||||||
Sbjct: 97510 actacaaaacaaacatatac 97529



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>gb|AC137823.45| Medicago truncatula clone mth2-14c17, complete sequence
          Length = 135139

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     aaaacaaacatatactccat 62
              ||||||||||||||||||||
Sbjct: 104894 aaaacaaacatatactccat 104913



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>emb|BX088715.9| Zebrafish DNA sequence from clone CH211-194B1 in linkage group 3,
             complete sequence
          Length = 153585

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    agcagtggtcgactggtggtgtat 34
             ||||||||| ||||||||||||||
Sbjct: 23301 agcagtggtggactggtggtgtat 23278



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>gb|AC151523.4| Medicago truncatula chromosome 7 BAC clone mth2-166j21, complete sequence
          Length = 123340

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     aaaacaaacatatactccat 62
              ||||||||||||||||||||
Sbjct: 114816 aaaacaaacatatactccat 114797



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>emb|AL954845.21| Zebrafish DNA sequence from clone DKEY-30H3, complete sequence
          Length = 226343

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     actacaaaacaaacatatac 57
              ||||||||||||||||||||
Sbjct: 168084 actacaaaacaaacatatac 168103


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,395,977
Number of Sequences: 3902068
Number of extensions: 1395977
Number of successful extensions: 31703
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31694
Number of HSP's gapped (non-prelim): 9
length of query: 228
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 206
effective length of database: 17,147,199,772
effective search space: 3532323153032
effective search space used: 3532323153032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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