ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal10h03 |
|---|---|
| Clone Library Name | barley_pub |
>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel| [Contains: Glutamic acid-rich protein (GARP); Cyclic-nucleotide-gated cation channel 4 (CNG channel 4) (CNG-4) (Cyclic nucleotide-gated cation channel modulatory subunit)] Length = 1394 Score = 34.3 bits (77), Expect = 0.27 Identities = 24/87 (27%), Positives = 42/87 (48%) Frame = +2 Query: 113 EHDRADEQPSRDGREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEHGRGHCGCA 292 E + +E+ +GRE+ + ++ E+ G + E++ G DE+ + + E GRG Sbjct: 378 EEEEGEEKEEEEGREKEEEEG-EKKEEEGREKEEEEGGEKEDEEGREKEEEEGRG----- 431 Query: 293 LDEAEESQVLGLGEQSELLQRGERDAE 373 E EE GE+ E RG+ + E Sbjct: 432 -KEEEEG-----GEKEEEEGRGKEEVE 452
>FMRA_CALPA (Q01133) Antho-RFamide neuropeptides precursor [Contains:| Antho-RFamide] Length = 334 Score = 33.5 bits (75), Expect = 0.46 Identities = 25/89 (28%), Positives = 39/89 (43%) Frame = +2 Query: 128 DEQPSRDGREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEHGRGHCGCALDEAE 307 +E R GRE+ EQG R ED +G +E++ R E +G G D+ Sbjct: 158 EEDQGRFGREEDQGRFGREEEQGRFGREEDQGRFGREEEQGRFGREEDQGRFGREEDQGR 217 Query: 308 ESQVLGLGEQSELLQRGERDAELLRLGQQ 394 G + E + G+RD + R G++ Sbjct: 218 ------FGREEEQGRFGKRDEDQGRFGKR 240
>VASA_DROME (P09052) ATP-dependent RNA helicase vasa (EC 3.6.1.-) (Antigen| Mab46F11) Length = 661 Score = 32.3 bits (72), Expect = 1.0 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%) Frame = +2 Query: 113 EHDRADEQPSRDGREQRSNDR---LDRYEQGGVVRHEDDRGYGGDEQRQR 253 E++ DE+ R RE+R +R LDR E+GG +RG GG +R+R Sbjct: 134 ENEDGDERRGRLDREERGGERRGRLDREERGG---ERGERGDGGFARRRR 180
>Y4651_STRCO (P41109) Putative lipoprotein SCO4651 precursor| Length = 282 Score = 32.3 bits (72), Expect = 1.0 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%) Frame = +2 Query: 35 TGGVSYYKTNIYSINGVKVL-----IVLQSIEHDRADEQPSRDGREQRSNDRLDRYEQGG 199 TG K ++ GVK + L +E ADE + + Q+S L++YE+ G Sbjct: 160 TGAKDVEKVGTETVEGVKTTHYKGTVTLADLEKSLADEDKATRDKRQKS---LEQYEKMG 216 Query: 200 VVRHEDDRGYGGDEQRQRQR 259 V + D GD+Q ++ R Sbjct: 217 VDKLTMDMWVDGDDQTKQFR 236
>TRHY_SHEEP (P22793) Trichohyalin| Length = 1549 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/58 (32%), Positives = 34/58 (58%) Frame = +2 Query: 101 LQSIEHDRADEQPSRDGREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEHGR 274 L+ +E R +EQ R+ R Q +R +Y + ++R E++R + ++Q QR+ CE R Sbjct: 775 LEKVELQREEEQLQREKRRQ---ERERQYREEELLR-EEERLHRKEQQLQREECEKRR 828 Score = 30.4 bits (67), Expect = 3.9 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 4/93 (4%) Frame = +2 Query: 101 LQSIEHDRA----DEQPSRDGREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEH 268 ++ +E DR ++Q R REQ+ DR + + R E DR + +EQ ++R E Sbjct: 956 IRYLEEDRKFREEEQQLRRLEREQQLRQERDRKFREELSRQERDRKFREEEQLLQEREEQ 1015 Query: 269 GRGHCGCALDEAEESQVLGLGEQSELLQRGERD 367 R D + L E+ E L+R ERD Sbjct: 1016 LRRQ---ERDRKFREEEQLLQEREEQLRRQERD 1045
>BRCA1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = +2 Query: 200 VVRHEDDRGYGGDEQRQRQRCEH---GRGHCGCALDEAEESQVLGLGEQSELLQRGERDA 370 +V +++RG G +E Q ++ G GC + + GL QS++L +RD Sbjct: 1340 LVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDT 1399 Query: 371 ---ELLRLGQQ 394 L++L Q+ Sbjct: 1400 MQDNLIKLQQE 1410
>BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein (RING finger| protein 53) Length = 1863 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = +2 Query: 200 VVRHEDDRGYGGDEQRQRQRCEH---GRGHCGCALDEAEESQVLGLGEQSELLQRGERDA 370 +V +++RG G +E Q ++ G GC + + GL QS++L +RD Sbjct: 1340 LVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDT 1399 Query: 371 ---ELLRLGQQ 394 L++L Q+ Sbjct: 1400 MQHNLIKLQQE 1410
>BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = +2 Query: 200 VVRHEDDRGYGGDEQRQRQRCEH---GRGHCGCALDEAEESQVLGLGEQSELLQRGERDA 370 +V +++RG G +E Q ++ G GC + + GL QS++L +RD Sbjct: 1340 LVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDT 1399 Query: 371 ---ELLRLGQQ 394 L++L Q+ Sbjct: 1400 MQDNLIKLQQE 1410
>R4RL2_RAT (Q80WD1) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor| homolog 1) (Nogo-66 receptor-related protein 2) (NgR2) (Nogo receptor-like 3) Length = 420 Score = 30.4 bits (67), Expect = 3.9 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Frame = +2 Query: 182 RYEQGGVVRHEDDR--GYGGDEQRQRQRCEHGRGHCGCALDEAEESQVLGLGEQSELL 349 R QGG EDD GYGG++QR Q C C VL G ++ LL Sbjct: 357 RGRQGGDAPTEDDYWGGYGGEDQRGEQTCP----GAACQAPADSRGPVLSAGLRTPLL 410
>AN32B_SHEEP (Q6A1I3) Acidic leucine-rich nuclear phosphoprotein 32 family| member B (Leucine-rich acidic nuclear protein) (LAN) (Acidic protein rich in leucines) Length = 261 Score = 30.4 bits (67), Expect = 3.9 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 12/97 (12%) Frame = +2 Query: 113 EHDRADEQPSRDGREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEHGRGHCGCA 292 E + D++ DG E+ +D D E V ED+ G+E+ GH G A Sbjct: 173 EGENEDKEEDEDGEEEEFDDEEDDDEDEDVEGEEDEDKVSGEEEE--------FGHDGEA 224 Query: 293 ------------LDEAEESQVLGLGEQSELLQRGERD 367 DE EE G G + E GE D Sbjct: 225 DEDDEDEDEDEDEDEEEEESGKGEGRKRETDDEGEDD 261
>IF2_RHOS4 (Q3IYN5) Translation initiation factor IF-2| Length = 836 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +2 Query: 122 RADEQPSRDGREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCE 265 RADE+ R+ QR + L+ E+ R E R DE+R R+ E Sbjct: 98 RADEERQREEERQRRREELEAKEREERERAEALRQKAEDEERARREAE 145
>NSBP1_MOUSE (Q9JL35) Nucleosome-binding protein 1 (Nucleosome-binding protein| 45) (NBP-45) (GARP45 protein) Length = 406 Score = 29.6 bits (65), Expect = 6.7 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 9/97 (9%) Frame = +2 Query: 113 EHDRADEQPSRDGREQ--RSNDRLDRYEQGGVV-RHEDD--RGYGGDEQRQRQRCEHGRG 277 E D ++QP DG+E + + + +E+GG HE+D GG E R+ + G Sbjct: 313 EEDGKEDQPEEDGKEGQCKEDGKEGHHEEGGKEDLHEEDGKEKDGGKEDRKEE------G 366 Query: 278 HCGCALDEAEESQVLGL----GEQSELLQRGERDAEL 376 A+DE + + E + Q GE++ L Sbjct: 367 EQEVAVDEGSDENKVEAEEEGAENKDFKQDGEKEEPL 403
>TRI55_RAT (Q5PQN5) Tripartite motif-containing 63 (Muscle-specific RING| finger protein 2) (MuRF2) (MURF-2) (RING finger protein 29) Length = 545 Score = 29.6 bits (65), Expect = 6.7 Identities = 21/76 (27%), Positives = 35/76 (46%) Frame = +2 Query: 149 GREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEHGRGHCGCALDEAEESQVLGL 328 G E +N ++ + ++R D DE + + E G G ++EAE QV Sbjct: 303 GYEIMNNFTVNLNREEKIIREIDFSREEEDEDDEGEVDEEGEGEDAVEVEEAENVQVASS 362 Query: 329 GEQSELLQRGERDAEL 376 GE+ E L++ +EL Sbjct: 363 GEE-ETLEKAAEPSEL 377
>GOGB1_HUMAN (Q14789) Golgin subfamily B member 1 (Giantin) (Macrogolgin) (372| kDa Golgi complex-associated protein) (GCP372) Length = 3259 Score = 29.3 bits (64), Expect = 8.7 Identities = 15/62 (24%), Positives = 31/62 (50%) Frame = +2 Query: 95 IVLQSIEHDRADEQPSRDGREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEHGR 274 I+L+ +E + A+ + S ++ + L+++EQ G + E + Y EQ+ + E Sbjct: 319 ILLEKMELEVAERKLSFHNLQEEMHHLLEQFEQAGQAQAELESRYSALEQKHKAEMEEKT 378 Query: 275 GH 280 H Sbjct: 379 SH 380
>R4RL2_MOUSE (Q7M6Z0) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor| homolog 1) (Nogo-66 receptor-related protein 2) (NgR2) (Nogo receptor-like 3) Length = 420 Score = 29.3 bits (64), Expect = 8.7 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +2 Query: 182 RYEQGGVVRHEDDR--GYGGDEQRQRQRC 262 R QGG EDD GYGG++QR Q C Sbjct: 357 RGRQGGDAPTEDDYWGGYGGEDQRGEQTC 385
>R4RL2_HUMAN (Q86UN3) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor| homolog 1) (Nogo-66 receptor-related protein 2) (NgR2) (Nogo receptor-like 3) Length = 420 Score = 29.3 bits (64), Expect = 8.7 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +2 Query: 182 RYEQGGVVRHEDDR--GYGGDEQRQRQRC 262 R QGG EDD GYGG++QR Q C Sbjct: 357 RGRQGGDAPTEDDYWGGYGGEDQRGEQMC 385
>RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 690 Score = 29.3 bits (64), Expect = 8.7 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 9/78 (11%) Frame = +2 Query: 113 EHDRADEQPSRDGREQRSNDRLDRYEQGG--------VVRHEDDRGYGGDEQR-QRQRCE 265 E+ R + + +GR+ R D+ E GG R +D GG +R +R R E Sbjct: 223 ENGRENSRDRENGRDGSREQRGDKSEDGGRGDGGRGDRSRRDDRDDEGGRNRRNRRNRNE 282 Query: 266 HGRGHCGCALDEAEESQV 319 GR G E +E+++ Sbjct: 283 RGRNRRGRGGPEVDETEL 300 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,161,565 Number of Sequences: 219361 Number of extensions: 949245 Number of successful extensions: 3168 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2991 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3146 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
