ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal10g24 |
|---|---|
| Clone Library Name | barley_pub |
>ICAM1_RAT (Q00238) Intercellular adhesion molecule 1 precursor (ICAM-1)| Length = 545 Score = 24.6 bits (52), Expect(2) = 1.5 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = -3 Query: 307 ILLRPQRRGGPQLLRHLLIASTAPRPPT 224 + ++ + GG Q++ L+ ST+PRPPT Sbjct: 328 VTVKCEAHGGAQVV---LLNSTSPRPPT 352 Score = 23.9 bits (50), Expect(2) = 1.5 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -3 Query: 244 TAPRPPTLHVHF*LASLRVAHRR 176 T+PRPPT + F L + H+R Sbjct: 356 TSPRPPTSQIQFTLNASPEDHKR 378
>IBP2_CHICK (P49705) Insulin-like growth factor-binding protein 2 precursor| (IGFBP-2) (IBP-2) (IGF-binding protein 2) Length = 311 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = -2 Query: 269 PASSADRLHGPAPA-HPPCTFLAGQPACGSPAIIGR 165 P +A+RL +PA PPC L +P CG + R Sbjct: 43 PPCTAERLAACSPAARPPCPELVREPGCGCCPVCAR 78
>SPAP_STRMU (P23504) Cell surface antigen I/II precursor [Contains: Cell| surface antigen I; Cell surface antigen II] Length = 1562 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = +1 Query: 178 AGEPHAGWPARNVHGGWAGAGPWRRSADDAGV 273 A EP +GW + + W GAG R S + V Sbjct: 753 ASEPGSGWDSSDAPNSWYGAGAIRMSGPNNSV 784
>OTOF_HUMAN (Q9HC10) Otoferlin (Fer-1-like protein 2)| Length = 1997 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Frame = +1 Query: 49 PKREKQDKXXXXXXXDHIAIAVAGRL---------TSGATTNHHRSRSRPMIAGEPHAGW 201 P+R + DH+AI + L + TTN RS+P I EP AG Sbjct: 191 PQRPDEPAVLEMEDLDHLAIRLGDGLDPDSVSLASVTALTTNVSNKRSKPDIKMEPSAGR 250 Query: 202 P 204 P Sbjct: 251 P 251
>IBP3_PIG (P16611) Insulin-like growth factor-binding protein 3 precursor| (IGFBP-3) (IBP-3) (IGF-binding protein 3) Length = 293 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = -2 Query: 239 PAPAHPPCTFLAGQPACG 186 P PA PPC L +P CG Sbjct: 53 PPPAAPPCAELVREPGCG 70
>OTOF_MOUSE (Q9ESF1) Otoferlin (Fer-1-like protein 2)| Length = 1997 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 9/61 (14%) Frame = +1 Query: 49 PKREKQDKXXXXXXXDHIAIAVAGRL---------TSGATTNHHRSRSRPMIAGEPHAGW 201 P+R+ + DH+AI + L + T+N RS+P I EP AG Sbjct: 190 PQRQDEPAVLEMEDLDHLAIQLGDGLDPDSVSLASVTALTSNVSNKRSKPDIKMEPSAGR 249 Query: 202 P 204 P Sbjct: 250 P 250
>UL07_HHV11 (P10191) Protein UL7| Length = 296 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Frame = -2 Query: 272 TPASSADRLHGPAP-----AHPPCTFLAGQPACGSPAIIGRDLLRWWLVVAP 132 TP SS+ RL GP P A+ P + +C + + L+ WWL P Sbjct: 236 TPTSSSFRLPGPPPRSDCVAYNPAGIMG---SCWASEEVRAPLVYWWLSETP 284
>CPS2_STRCC (Q59831) Cytochrome P450 105A3 (EC 1.14.-.-) (Cytochrome P450| sca-2) (CYT P-450sca-2) Length = 409 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/36 (50%), Positives = 20/36 (55%) Frame = -2 Query: 269 PASSADRLHGPAPAHPPCTFLAGQPACGSPAIIGRD 162 P S+DRLH PA P F A + GSPA IG D Sbjct: 70 PRLSSDRLHADFPATSP-RFKAFRQ--GSPAFIGMD 102
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +1 Query: 166 RPMIAGEPHAGWPARNVHGGWAGAGPWRRS 255 RP+ G H G R GG G GP RR+ Sbjct: 92 RPLQDGGDHRGGDFRGGRGGGRGGGPQRRT 121
>DAK_BOVIN (Q58DK4) Dihydroxyacetone kinase (EC 2.7.1.29) (Glycerone kinase)| (DHA kinase) Length = 578 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%) Frame = -1 Query: 210 SSWP--ACVWLTGDHRSRPAP 154 S+WP A VW+TG RSR AP Sbjct: 334 SAWPNVAKVWVTGRKRSRAAP 354
>SPAA_STRDO (P21979) Cell surface antigen I/II precursor| Length = 1528 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 Query: 178 AGEPHAGWPARNVHGGWAGAGPWRRS 255 A EP +GW + + W GAG R S Sbjct: 764 ASEPGSGWDSADAPNSWYGAGAVRMS 789
>UQCR1_MOUSE (Q9CZ13) Ubiquinol-cytochrome-c reductase complex core protein I,| mitochondrial precursor (EC 1.10.2.2) Length = 480 Score = 27.3 bits (59), Expect = 9.0 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Frame = -3 Query: 307 ILLRPQRRGGPQLLRHLLIASTAP------RPPTLHVHF*LASLRVAHRRSSVATCSGGG 146 +LLR +R P LLR + TA P V LRVA +SS ATC+ G Sbjct: 16 VLLRTRR--SPALLRLPALRGTATFAQALQSVPETQVSILDNGLRVASEQSSHATCTVGV 73 Query: 145 W 143 W Sbjct: 74 W 74
>UQCR1_HUMAN (P31930) Ubiquinol-cytochrome-c reductase complex core protein I,| mitochondrial precursor (EC 1.10.2.2) Length = 480 Score = 27.3 bits (59), Expect = 9.0 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Frame = -3 Query: 307 ILLRPQRRGGPQLLRHLLIASTAPRP------PTLHVHF*LASLRVAHRRSSVATCSGGG 146 +LLR +R P LLR + STA P V LRVA +SS TC+ G Sbjct: 16 VLLRARR--SPALLRTPALRSTATFAQALQFVPETQVSLLDNGLRVASEQSSQPTCTVGV 73 Query: 145 W 143 W Sbjct: 74 W 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,956,754 Number of Sequences: 219361 Number of extensions: 909425 Number of successful extensions: 2772 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2771 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
