ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10g23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ICAM1_RAT (Q00238) Intercellular adhesion molecule 1 precursor (... 25 5.5

>ICAM1_RAT (Q00238) Intercellular adhesion molecule 1 precursor (ICAM-1)|
          Length = 545

 Score = 24.6 bits (52), Expect(2) = 5.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 316 ILLRPQRRGGPQLLRHLLIASTAPRPPT 233
           + ++ +  GG Q++   L+ ST+PRPPT
Sbjct: 328 VTVKCEAHGGAQVV---LLNSTSPRPPT 352



 Score = 23.9 bits (50), Expect(2) = 5.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 253 TAPRPPTLHVHF*LASLRVAHRR 185
           T+PRPPT  + F L +    H+R
Sbjct: 356 TSPRPPTSQIQFTLNASPEDHKR 378


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,690,898
Number of Sequences: 219361
Number of extensions: 919583
Number of successful extensions: 2959
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2952
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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