ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TGFA_RAT (P01134) Transforming growth factor alpha precursor (TG... 32 0.48
2TGFA_MACMU (P55244) Transforming growth factor alpha precursor (... 31 0.63
3TGFA_PIG (Q06922) Transforming growth factor alpha precursor (TG... 31 0.63
4TGFA_HUMAN (P01135) Transforming growth factor alpha precursor (... 31 0.63
5CRIS2_MOUSE (P16563) Cysteine-rich secretory protein 2 precursor... 31 0.82
6TGFA_MOUSE (P48030) Transforming growth factor alpha precursor (... 30 1.1
7TGFA_SHEEP (P98135) Transforming growth factor alpha precursor (... 30 1.4
8KR102_HUMAN (P60368) Keratin-associated protein 10-2 (Keratin-as... 30 1.4
9CRIS2_HUMAN (P16562) Cysteine-rich secretory protein 2 precursor... 29 2.4
10KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-as... 29 3.1
11VCAP_EHV1V (Q6S6S9) Major capsid protein (MCP) (Capsid protein VP5) 28 4.1
12VCAP_EHV1B (P28920) Major capsid protein (MCP) (Capsid protein VP5) 28 4.1
13OR2B2_HUMAN (Q9GZK3) Olfactory receptor 2B2 (Olfactory receptor ... 28 7.0
14MCATL_HUMAN (Q8N8R3) Mitchondrial carnitine/acylcarnitine carrie... 27 9.1
15YIGM_ECOLI (P0ADP5) Hypothetical membrane protein yigM 27 9.1
16YIGM_ECO57 (P0ADP6) Hypothetical membrane protein yigM 27 9.1
17CRIS3_HORSE (O19010) Cysteine-rich secretory protein 3 precursor... 27 9.1
18YXCE_BACSU (P46335) Hypothetical protein yxcE 27 9.1
19OR2A5_HUMAN (Q96R48) Olfactory receptor 2A5 (Olfactory receptor ... 27 9.1

>TGFA_RAT (P01134) Transforming growth factor alpha precursor (TGF-alpha)|
           (EGF-like TGF) (ETGF) (TGF type 1)
          Length = 159

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -3

Query: 231 CITH-GFLKFR--HAALLS*TRPSVKSVTWAAAVLMSIVAQYSIWSHIITCYLVKXCXVR 61
           C+ H G++  R  HA LL+    S K     A V++SIVA   +   IITC L+  C VR
Sbjct: 70  CVCHSGYVGVRCEHADLLAVVAASQKKQAITALVVVSIVALAVL---IITCVLIHCCQVR 126



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>TGFA_MACMU (P55244) Transforming growth factor alpha precursor (TGF-alpha)|
           (EGF-like TGF) (ETGF) (TGF type 1) (Fragment)
          Length = 121

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -3

Query: 231 CITH-GFLKFR--HAALLS*TRPSVKSVTWAAAVLMSIVAQYSIWSHIITCYLVKXCXVR 61
           C+ H G++  R  HA LL+    S K     A V++SIVA   +   IITC L+  C VR
Sbjct: 48  CVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL---IITCVLIHCCQVR 104



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>TGFA_PIG (Q06922) Transforming growth factor alpha precursor (TGF-alpha)|
           (EGF-like TGF) (ETGF) (TGF type 1)
          Length = 160

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -3

Query: 231 CITH-GFLKFR--HAALLS*TRPSVKSVTWAAAVLMSIVAQYSIWSHIITCYLVKXCXVR 61
           C+ H G++  R  HA LL+    S K     A V++SIVA   +   IITC L+  C VR
Sbjct: 71  CVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL---IITCVLIHCCQVR 127



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>TGFA_HUMAN (P01135) Transforming growth factor alpha precursor (TGF-alpha)|
           (EGF-like TGF) (ETGF) (TGF type 1)
          Length = 160

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -3

Query: 231 CITH-GFLKFR--HAALLS*TRPSVKSVTWAAAVLMSIVAQYSIWSHIITCYLVKXCXVR 61
           C+ H G++  R  HA LL+    S K     A V++SIVA   +   IITC L+  C VR
Sbjct: 71  CVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL---IITCVLIHCCQVR 127



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>CRIS2_MOUSE (P16563) Cysteine-rich secretory protein 2 precursor (CRISP-2)|
           (Testis-specific protein TPX-1)
          Length = 243

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 277 CKQPFCEHSCSMRSLVHHAWVLKIPTCCXAELNKTECKISDL 152
           C+   C +SC    L+ +   LK    C  EL KT+C+ + L
Sbjct: 196 CENGLCTNSCDFEDLLSNCESLKTSAGCKHELLKTKCQATCL 237



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>TGFA_MOUSE (P48030) Transforming growth factor alpha precursor (TGF-alpha)|
           (EGF-like TGF) (ETGF) (TGF type 1)
          Length = 159

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -3

Query: 231 CITH-GFLKFR--HAALLS*TRPSVKSVTWAAAVLMSIVAQYSIWSHIITCYLVKXCXVR 61
           C+ H G++  R  HA LL+    S K     A V++SIVA   +   IITC L+  C +R
Sbjct: 70  CVCHSGYVGVRCEHADLLAVVAASQKKQAITALVVVSIVALAVL---IITCVLIHCCQLR 126



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>TGFA_SHEEP (P98135) Transforming growth factor alpha precursor (TGF-alpha)|
           (EGF-like TGF) (ETGF) (TGF type 1) (Fragment)
          Length = 133

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -3

Query: 231 CITH-GFLKFR--HAALLS*TRPSVKSVTWAAAVLMSIVAQYSIWSHIITCYLVKXCXVR 61
           C+ H G++  R  HA LL+    S K     A V+++IVA   +   IITC L+  C VR
Sbjct: 70  CVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVTIVALAVL---IITCVLIHCCEVR 126



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>KR102_HUMAN (P60368) Keratin-associated protein 10-2 (Keratin-associated|
           protein 10.2) (High sulfur keratin-associated protein
           10.2) (Keratin-associated protein 18-2)
           (Keratin-associated protein 18.2)
          Length = 255

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -2

Query: 277 CKQPFCEHSCSMRSLVHHAWVLKIPTCCXAELNKTECKISDLGCCSTYEHSC 122
           C+Q  C+ +C   S    +   ++P CC A      C  S   CC   + SC
Sbjct: 121 CQQSSCQPACCASSSCQQS--CRVPVCCKAVCCVPTCSESSSSCCQ--QSSC 168



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>CRIS2_HUMAN (P16562) Cysteine-rich secretory protein 2 precursor (CRISP-2)|
           (Testis-specific protein TPX-1)
          Length = 243

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 280 ECKQPFCEHSCSMRSLVHHAWVLKIPTCCXAELNKTECKISDL 152
           +C +  C +SC  + L+ +   LK    C  EL K +CK + L
Sbjct: 195 DCDKGLCTNSCQYQDLLSNCDSLKNTAGCEHELLKEKCKATCL 237



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>KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-associated|
           protein 10.4) (High sulfur keratin-associated protein
           10.4) (Keratin-associated protein 18-4)
           (Keratin-associated protein 18.4)
          Length = 401

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = -2

Query: 277 CKQPFCEHSCSMRSLVHHAWVLKIPTCCXAELNKTECKISDLGCCSTYEHSC 122
           C+Q  C+ +C   S    A    +P CC     K  C      CC   + SC
Sbjct: 209 CQQSSCQPACCTSSSCQQACC--VPVCCKTVCCKPVCSEDSSSCCQ--QSSC 256



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>VCAP_EHV1V (Q6S6S9) Major capsid protein (MCP) (Capsid protein VP5)|
          Length = 1376

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +2

Query: 44  CTPVLHRTXXLLTR*QVIMWDQIEY*ATMLISTAAAQVTDFTLGLVQLSXAACRNFKNPC 223
           C P+LHR      R Q +  D ++Y A   +  A     +    LV        N +NP 
Sbjct: 739 CDPILHRADMGRARAQELWVDGVDYAAIPWVEMAEVNFGNTGGHLVHNRPIRGENKRNPI 798

Query: 224 VMHQRP 241
           V H  P
Sbjct: 799 VPHHDP 804



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>VCAP_EHV1B (P28920) Major capsid protein (MCP) (Capsid protein VP5)|
          Length = 1376

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +2

Query: 44  CTPVLHRTXXLLTR*QVIMWDQIEY*ATMLISTAAAQVTDFTLGLVQLSXAACRNFKNPC 223
           C P+LHR      R Q +  D ++Y A   +  A     +    LV        N +NP 
Sbjct: 739 CDPILHRADMGRARAQELWVDGVDYAAIPWVEMAEVNFGNTGGHLVHNRPIRGENKRNPI 798

Query: 224 VMHQRP 241
           V H  P
Sbjct: 799 VPHHDP 804



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>OR2B2_HUMAN (Q9GZK3) Olfactory receptor 2B2 (Olfactory receptor 6-1) (OR6-1)|
           (Hs6M1-10)
          Length = 357

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
 Frame = -2

Query: 313 PLYDSHLLNRTECKQPFCEHSCS--MRSLVHHAWVLKIPTCCXAELNKTECKIS---DLG 149
           PL+ S ++++  C Q       S    S++   W LK+P C   E++   C++     L 
Sbjct: 129 PLHYSIIMHQRLCFQLAAASWISGFSNSVLQSTWTLKMPLCGHKEVDHFFCEVPALLKLS 188

Query: 148 CCSTYEHSCSILYLVPHYYLL 86
           C  T  +   + ++   + L+
Sbjct: 189 CVDTTANEAELFFISVLFLLI 209



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>MCATL_HUMAN (Q8N8R3) Mitchondrial carnitine/acylcarnitine carrier protein CACL|
           (CACT-like) (Solute carrier family 25 member 29)
          Length = 303

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 223 AWVLKIPTCCXAELNKTECKISDLGCCSTYEHSCSIL 113
           A  ++   CC  EL KT  ++ D G   TY+ S   L
Sbjct: 102 AGAIQCVICCPMELAKTRLQLQDAGPARTYKGSLDCL 138



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>YIGM_ECOLI (P0ADP5) Hypothetical membrane protein yigM|
          Length = 299

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 146 AAQVTDFTLGLVQLSXAACRNFKNPCVMHQRPH*ATMLTKGLLTL 280
           A QV   TLG++           N  + HQ+PH  T +T  L+ L
Sbjct: 226 ATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPTFITGALVIL 270



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>YIGM_ECO57 (P0ADP6) Hypothetical membrane protein yigM|
          Length = 299

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 146 AAQVTDFTLGLVQLSXAACRNFKNPCVMHQRPH*ATMLTKGLLTL 280
           A QV   TLG++           N  + HQ+PH  T +T  L+ L
Sbjct: 226 ATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPTFITGALVIL 270



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>CRIS3_HORSE (O19010) Cysteine-rich secretory protein 3 precursor (CRISP-3)|
          Length = 245

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -2

Query: 277 CKQPFCEHSCSMRSLVHHAWVLKIPTCCXAELNKTECK 164
           C    C +SC    LV +   LK    C  EL K  CK
Sbjct: 198 CDNGLCTNSCEYEDLVSNCDSLKKIAGCEHELLKENCK 235



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>YXCE_BACSU (P46335) Hypothetical protein yxcE|
          Length = 216

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 22/101 (21%), Positives = 44/101 (43%)
 Frame = +1

Query: 40  ILYACLASDXTXFN*ITSNNVGPNRVLSNYAHKYCSSPSH*FYTRSCSAQQXSMSEF*EP 219
           +L     S    F+  +S++       S+Y+  Y SSP   + + S S+ + S +     
Sbjct: 18  VLLPSTISHAKSFSGRSSSSYSSRSSSSSYSGSYKSSPKSSYSSGSSSSSKKSKTS---- 73

Query: 220 MRDAPATALSNYAHKRVAYTRSCSAGGNHTMATGKKTGQEY 342
              + + +L     ++ + + S  + G  + AT K TG+ Y
Sbjct: 74  DDSSSSISLKKKPSEKASSSSSKKSSGTFSGATSKVTGKTY 114



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>OR2A5_HUMAN (Q96R48) Olfactory receptor 2A5 (Olfactory receptor 7-138/7-141)|
           (OR7-138) (OR7-141)
          Length = 311

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 247 SMRSLVHHAWVLKIPTCCXAELNKTECKISD---LGCCSTY 134
           S+ +LVH   +L++P C   E+N   C+I     L C  T+
Sbjct: 153 SLLALVHVVLILRLPFCGPHEINHFFCEILSVLKLACADTW 193


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,815,894
Number of Sequences: 219361
Number of extensions: 1020706
Number of successful extensions: 2265
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2264
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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