ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6g19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF262983.1|AF262983 Triticum aestivum cyclophilin A-2 (CyP2) ... 167 2e-38
2gb|AY456122.1| Triticum aestivum cyclophilin A (CYP18-2) gene, c... 167 2e-38
3gb|AF262982.1|AF262982 Triticum aestivum cyclophilin A-1 (CyP1) ... 159 5e-36
4gb|AY456123.1| Triticum aestivum cyclophilin A (CYP18-1) gene, p... 159 5e-36
5gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) ... 153 3e-34
6gb|AY456124.1| Triticum aestivum cyclophilin A (CYP18-3) gene, p... 151 1e-33
7gb|AF384147.1|AF384147 Triticum aestivum cyclophilin mRNA, parti... 56 5e-05
8ref|XM_463914.1| Oryza sativa (japonica cultivar-group), mRNA 52 8e-04
9ref|XM_506694.1| PREDICTED Oryza sativa (japonica cultivar-group... 52 8e-04
10gb|AF263543.1| Oryza sativa clone 15CAC microsatellite sequence 52 8e-04
11gb|AF263542.1| Oryza sativa clone 19CAC microsatellite sequence 52 8e-04
12gb|DQ480736.1| Oryza sativa (indica cultivar-group) cyclophilinA... 52 8e-04
13dbj|AK061894.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 8e-04
15dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic D... 52 8e-04
16dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic D... 52 8e-04
17dbj|AK098919.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
18gb|L29469.1|RICCYP2G Oryza sativa cyclophilin 2 (Cyp2) gene, com... 52 8e-04
19gb|L29470.1|RICCYP2R Oryza sativa cyclophilin 2 (Cyp2) mRNA, com... 50 0.003
20gb|U36797.1|HMU36797 Hirudo medicinalis cyclophilin-A mRNA (hcyp... 46 0.050
21ref|NM_074348.4| Caenorhabditis elegans CYclophyliN family membe... 42 0.78
22dbj|D29701.1|RICYK13 Oryza sativa mRNA, partial homologous to cy... 42 0.78
23emb|AL032663.1|CEY75B12B Caenorhabditis elegans YAC Y75B12B, com... 42 0.78
24gb|U27559.1|CEU27559 Caenorhabditis elegans cyclophilin (cyp-7) ... 42 0.78
25emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chr... 42 0.78
26emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete ... 40 3.1 
>gb|AF262983.1|AF262983 Triticum aestivum cyclophilin A-2 (CyP2) mRNA, complete cds
          Length = 845

 Score =  167 bits (84), Expect = 2e-38
 Identities = 109/116 (93%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  ggaagataacc-tggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 75
           ||||||||||| |||| ||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 776 ggaagataaccatggccgccggacacagatccagcggccaaaagagtccacctaaaaccc 717

                                                                   
Query: 76  tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 131
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 716 tcctaaaccaaccacggagatctcatcggacggacaaggggaagacacgacacgac 661



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 213 ctagagctggccgcagtcggcgatgacg 240
           ||||||||||||||||||||||||||||
Sbjct: 586 ctagagctggccgcagtcggcgatgacg 559
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>gb|AY456122.1| Triticum aestivum cyclophilin A (CYP18-2) gene, complete cds
          Length = 781

 Score =  167 bits (84), Expect = 2e-38
 Identities = 109/116 (93%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  ggaagataacc-tggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 75
           ||||||||||| |||| ||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 740 ggaagataaccatggccgccggacacagatccagcggccaaaagagtccacctaaaaccc 681

                                                                   
Query: 76  tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 131
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 680 tcctaaaccaaccacggagatctcatcggacggacaaggggaagacacgacacgac 625



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 213 ctagagctggccgcagtcggcgatgacg 240
           ||||||||||||||||||||||||||||
Sbjct: 550 ctagagctggccgcagtcggcgatgacg 523
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>gb|AF262982.1|AF262982 Triticum aestivum cyclophilin A-1 (CyP1) mRNA, complete cds
          Length = 859

 Score =  159 bits (80), Expect = 5e-36
 Identities = 108/116 (93%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  ggaagataacct-ggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 75
           |||||||||||  |||||||||||  ||||||||||||| ||||||||||||||||||||
Sbjct: 784 ggaagataaccaaggcggccggacagagatccagcagcccaaagagtccacctaaaaccc 725

                                                                   
Query: 76  tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 131
           |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||
Sbjct: 724 tcctaaaccaaccacggagatctcatcggacggaccaggggaagacacgacacgac 669



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 213 ctagagctggccgcagtcggcgatgac 239
           |||||||||||||||||||||||||||
Sbjct: 578 ctagagctggccgcagtcggcgatgac 552
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>gb|AY456123.1| Triticum aestivum cyclophilin A (CYP18-1) gene, partial cds
          Length = 519

 Score =  159 bits (80), Expect = 5e-36
 Identities = 108/116 (93%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  ggaagataacct-ggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 75
           |||||||||||  |||||||||||  ||||||||||||| ||||||||||||||||||||
Sbjct: 514 ggaagataaccaaggcggccggacagagatccagcagcccaaagagtccacctaaaaccc 455

                                                                   
Query: 76  tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 131
           |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||
Sbjct: 454 tcctaaaccaaccacggagatctcatcggacggaccaggggaagacacgacacgac 399



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 213 ctagagctggccgcagtcggcgatgac 239
           |||||||||||||||||||||||||||
Sbjct: 308 ctagagctggccgcagtcggcgatgac 282
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>gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) mRNA, complete cds
          Length = 869

 Score =  153 bits (77), Expect = 3e-34
 Identities = 105/113 (92%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  ggaagataacct-ggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 75
           |||||||||||  ||| |||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 780 ggaagataaccaaggccgccggacgcagatccagcggcccaaagagtccacctaaaaccc 721

                                                                
Query: 76  tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacac 128
           |||||||||||||||||||||||||||||||||||  ||| ||||||||||||
Sbjct: 720 tcctaaaccaaccacggagatctcatcggacggaccaggggaagacacgacac 668



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 213 ctagagctggccgcagtcggcgatgacg 240
           ||||||||||||||||||||||||||||
Sbjct: 586 ctagagctggccgcagtcggcgatgacg 559
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>gb|AY456124.1| Triticum aestivum cyclophilin A (CYP18-3) gene, partial cds
          Length = 494

 Score =  151 bits (76), Expect = 1e-33
 Identities = 91/96 (94%)
 Strand = Plus / Minus

                                                                       
Query: 33  gccggacgcagatccagcagcctaaagagtccacctaaaaccctcctaaaccaaccacgg 92
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 484 gccggacgcagatccagcggcccaaagagtccacctaaaaccctcctaaaccaaccacgg 425

                                               
Query: 93  agatctcatcggacggacaggggcaagacacgacac 128
           ||||||||||||||||||  ||| ||||||||||||
Sbjct: 424 agatctcatcggacggaccaggggaagacacgacac 389



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 213 ctagagctggccgcagtcggcgatgacg 240
           ||||||||||||||||||||||||||||
Sbjct: 307 ctagagctggccgcagtcggcgatgacg 280
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>gb|AF384147.1|AF384147 Triticum aestivum cyclophilin mRNA, partial cds
          Length = 430

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 213 ctagagctggccgcagtcggcgatgacg 240
           ||||||||||||||||||||||||||||
Sbjct: 396 ctagagctggccgcagtcggcgatgacg 369
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>ref|XM_463914.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 885

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 215 agagctggccgcagtcggcgatgacg 240
           ||||||||||||||||||||||||||
Sbjct: 607 agagctggccgcagtcggcgatgacg 582
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>ref|XM_506694.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0088N06.23
           mRNA
          Length = 887

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 215 agagctggccgcagtcggcgatgacg 240
           ||||||||||||||||||||||||||
Sbjct: 608 agagctggccgcagtcggcgatgacg 583
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>gb|AF263543.1| Oryza sativa clone 15CAC microsatellite sequence
          Length = 435

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 215 agagctggccgcagtcggcgatgacg 240
           ||||||||||||||||||||||||||
Sbjct: 120 agagctggccgcagtcggcgatgacg 95
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>gb|AF263542.1| Oryza sativa clone 19CAC microsatellite sequence
          Length = 429

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 215 agagctggccgcagtcggcgatgacg 240
           ||||||||||||||||||||||||||
Sbjct: 99  agagctggccgcagtcggcgatgacg 74
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>gb|DQ480736.1| Oryza sativa (indica cultivar-group) cyclophilinA mRNA, complete
           cds
          Length = 588

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 215 agagctggccgcagtcggcgatgacg 240
           ||||||||||||||||||||||||||
Sbjct: 524 agagctggccgcagtcggcgatgacg 499
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>dbj|AK061894.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G07, full
           insert sequence
          Length = 887

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 215 agagctggccgcagtcggcgatgacg 240
           ||||||||||||||||||||||||||
Sbjct: 608 agagctggccgcagtcggcgatgacg 583
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                         
Query: 215     agagctggccgcagtcggcgatgacg 240
               ||||||||||||||||||||||||||
Sbjct: 1116673 agagctggccgcagtcggcgatgacg 1116648
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>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1020_C02
          Length = 124578

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 215   agagctggccgcagtcggcgatgacg 240
             ||||||||||||||||||||||||||
Sbjct: 69197 agagctggccgcagtcggcgatgacg 69172
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>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0088N06
          Length = 123454

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 215    agagctggccgcagtcggcgatgacg 240
              ||||||||||||||||||||||||||
Sbjct: 105381 agagctggccgcagtcggcgatgacg 105356
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>dbj|AK098919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N03, full
           insert sequence
          Length = 885

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 215 agagctggccgcagtcggcgatgacg 240
           ||||||||||||||||||||||||||
Sbjct: 607 agagctggccgcagtcggcgatgacg 582
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>gb|L29469.1|RICCYP2G Oryza sativa cyclophilin 2 (Cyp2) gene, complete cds
          Length = 2323

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 215  agagctggccgcagtcggcgatgacg 240
            ||||||||||||||||||||||||||
Sbjct: 1663 agagctggccgcagtcggcgatgacg 1638
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>gb|L29470.1|RICCYP2R Oryza sativa cyclophilin 2 (Cyp2) mRNA, complete cds
          Length = 824

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 215 agagctggccgcagtcggcgatgac 239
           |||||||||||||||||||||||||
Sbjct: 552 agagctggccgcagtcggcgatgac 528
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>gb|U36797.1|HMU36797 Hirudo medicinalis cyclophilin-A mRNA (hcyp),complete cds
          Length = 617

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 214 tagagctggccgcagtcggcgat 236
           |||||||||||||||||||||||
Sbjct: 482 tagagctggccgcagtcggcgat 460
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>ref|NM_074348.4| Caenorhabditis elegans CYclophyliN family member (cyn-7) (cyn-7)
           mRNA, complete cds
          Length = 644

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 214 tagagctggccgcagtcggcgatga 238
           |||||||| ||||||||||||||||
Sbjct: 545 tagagctgtccgcagtcggcgatga 521
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>dbj|D29701.1|RICYK13 Oryza sativa mRNA, partial homologous to cyclophilin gene
          Length = 356

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 220 tggccgcagtcggcgatgacg 240
           |||||||||||||||||||||
Sbjct: 260 tggccgcagtcggcgatgacg 240
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>emb|AL032663.1|CEY75B12B Caenorhabditis elegans YAC Y75B12B, complete sequence
          Length = 23906

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 214  tagagctggccgcagtcggcgatga 238
            |||||||| ||||||||||||||||
Sbjct: 3489 tagagctgtccgcagtcggcgatga 3513
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>gb|U27559.1|CEU27559 Caenorhabditis elegans cyclophilin (cyp-7) mRNA, complete cds
          Length = 525

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 214 tagagctggccgcagtcggcgatga 238
           |||||||| ||||||||||||||||
Sbjct: 524 tagagctgtccgcagtcggcgatga 500
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>emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chromosome 13, complete
             sequence
          Length = 183340

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 62    tccacctaaaaccctcctaaaccaaccac 90
             ||||||| ||||| |||||||||||||||
Sbjct: 53760 tccacctgaaaccatcctaaaccaaccac 53732
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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    ggccgcagtcggcgatgacg 240
              ||||||||||||||||||||
Sbjct: 116807 ggccgcagtcggcgatgacg 116788


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 825,831
Number of Sequences: 3902068
Number of extensions: 825831
Number of successful extensions: 13119
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13082
Number of HSP's gapped (non-prelim): 37
length of query: 240
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 218
effective length of database: 17,147,199,772
effective search space: 3738089550296
effective search space used: 3738089550296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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