ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10f24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018136.1| Zea mays clone EL01N0554F10.c mRNA sequence 48 0.038
2emb|AL121594.6|CNS01DRY Human chromosome 14 DNA sequence BAC R-1... 46 0.15
3emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 46 0.15
4ref|XM_475852.1| Oryza sativa (japonica cultivar-group), predic... 44 0.60
5ref|NM_193539.1| Oryza sativa (japonica cultivar-group), predic... 44 0.60
6gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.60
7gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.60
8gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.60
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.60
10dbj|AK099552.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.60
11dbj|AK068876.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.60
12dbj|AK067665.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.60
13dbj|AK065969.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.60
14gb|AC079623.15| Homo sapiens 3 BAC RP11-201D16 (Roswell Park Can... 42 2.4
15emb|AL663067.14| Mouse DNA sequence from clone RP23-23G3 on chro... 42 2.4
16gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 9.3
17gb|BC077793.1| Xenopus laevis oxidative-stress responsive 1, mRN... 40 9.3
18gb|AY588319.1| PRRSV LV4.2.1, complete genome 40 9.3
19gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 9.3
20gb|AY743933.1| Porcine reproductive and respiratory syndrome vir... 40 9.3
21gb|AY633973.1| Porcine reproductive and respiratory syndrome vir... 40 9.3
22gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 9.3
23gb|AY526909.1| Bordetella phage BIP-1, complete genome 40 9.3
24gb|AY526908.1| Bordetella phage BMP-1, complete genome 40 9.3
25gb|AY029185.2| Bordetella phage BPP-1, complete genome 40 9.3
26gb|AY518540.1| Homo sapiens CDC5 cell division cycle 5-like (S. ... 40 9.3
27gb|AC131738.3| Mus musculus BAC clone RP23-94E15 from 16, comple... 40 9.3
28gb|DQ477805.1| Porcine respiratory and reproductive syndrome vir... 40 9.3
29gb|AC135606.17| Medicago truncatula clone mth2-10j1, complete se... 40 9.3
30emb|AL590431.11| Human DNA sequence from clone RP11-205M9 on chr... 40 9.3
31emb|AL354980.16| Human DNA sequence from clone RP11-137P24 on ch... 40 9.3
32emb|AL353588.25| Human DNA sequence from clone RP11-444E17 on ch... 40 9.3
33emb|AL136526.27| Human DNA sequence from clone RP11-151A6 on chr... 40 9.3
34emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 9.3
35emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete ... 40 9.3
36gb|AC156023.2| Mus musculus BAC clone RP23-210I15 from chromosom... 40 9.3
37gb|AC153131.5| Mus musculus BAC clone RP24-356O12 from chromosom... 40 9.3
38emb|BX510309.11| Zebrafish DNA sequence from clone DKEY-252L17 i... 40 9.3
39emb|BX510949.10| Zebrafish DNA sequence from clone DKEY-97E19 in... 40 9.3
40emb|BX119905.13| Zebrafish DNA sequence from clone CH211-209H17,... 40 9.3
41dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 40 9.3
42dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111 40 9.3
43dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome 40 9.3
44dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
45gb|AC009969.10| Homo sapiens BAC clone RP11-418G17 from 2, compl... 40 9.3
46gb|M96262.2|LEYPOLYENV Lelystad virus, complete genome 40 9.3
47gb|AF253536.1|AF253536 Porcine reproductive and respiratory synd... 40 9.3
48gb|AF253535.1|AF253535 Porcine reproductive and respiratory synd... 40 9.3
49gb|AF253534.1|AF253534 Porcine reproductive and respiratory synd... 40 9.3
50gb|AF253533.1|AF253533 Porcine reproductive and respiratory synd... 40 9.3
51gb|AF253532.1|AF253532 Porcine reproductive and respiratory synd... 40 9.3
52dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
53gb|AC154794.2| Mus musculus BAC clone RP24-485J1 from 16, comple... 40 9.3
54gb|AC132618.3| Mus musculus BAC clone RP23-238K12 from 6, comple... 40 9.3 
>gb|BT018136.1| Zea mays clone EL01N0554F10.c mRNA sequence
          Length = 829

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 84  cggcgcggggcttgagcttctgggtgtagttgaaga 119
           |||||||  |||||||| ||||||||||||||||||
Sbjct: 625 cggcgcgctgcttgagcatctgggtgtagttgaaga 590
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>emb|AL121594.6|CNS01DRY Human chromosome 14 DNA sequence BAC R-173D9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196023

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 317   cataaatgtaacataaatgactc 339
             |||||||||||||||||||||||
Sbjct: 45144 cataaatgtaacataaatgactc 45166
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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 647     tggagctgttccagtgcaggcat 669
               |||||||||||||||||||||||
Sbjct: 2697898 tggagctgttccagtgcaggcat 2697876
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>ref|XM_475852.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1095

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 73  ccggccgccgccggcgcggggc 94
           ||||||||||||||||||||||
Sbjct: 383 ccggccgccgccggcgcggggc 362
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>ref|NM_193539.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1770

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 424 accatgcatcacatcctcttccccca 449
           |||||||||||||||||||| |||||
Sbjct: 147 accatgcatcacatcctcttgcccca 122
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>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03,
             complete sequence
          Length = 177861

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 73    ccggccgccgccggcgcggggc 94
             ||||||||||||||||||||||
Sbjct: 28918 ccggccgccgccggcgcggggc 28897
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>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05,
              complete sequence
          Length = 141715

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 73     ccggccgccgccggcgcggggc 94
              ||||||||||||||||||||||
Sbjct: 104103 ccggccgccgccggcgcggggc 104082
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>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08,
              complete sequence
          Length = 166218

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 73     ccggccgccgccggcgcggggc 94
              ||||||||||||||||||||||
Sbjct: 128606 ccggccgccgccggcgcggggc 128585
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 73       ccggccgccgccggcgcggggc 94
                ||||||||||||||||||||||
Sbjct: 27097522 ccggccgccgccggcgcggggc 27097501
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>dbj|AK099552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033I10, full
           insert sequence
          Length = 2185

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 424 accatgcatcacatcctcttccccca 449
           |||||||||||||||||||| |||||
Sbjct: 404 accatgcatcacatcctcttgcccca 379
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>dbj|AK068876.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170E02, full
           insert sequence
          Length = 1666

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 424 accatgcatcacatcctcttccccca 449
           |||||||||||||||||||| |||||
Sbjct: 523 accatgcatcacatcctcttgcccca 498
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>dbj|AK067665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116C16, full
           insert sequence
          Length = 2289

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 424 accatgcatcacatcctcttccccca 449
           |||||||||||||||||||| |||||
Sbjct: 481 accatgcatcacatcctcttgcccca 456
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>dbj|AK065969.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049M24, full
           insert sequence
          Length = 924

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 424 accatgcatcacatcctcttccccca 449
           |||||||||||||||||||| |||||
Sbjct: 479 accatgcatcacatcctcttgcccca 454
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>gb|AC079623.15| Homo sapiens 3 BAC RP11-201D16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 201451

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 630    ttgctcggagcttcaggtggagctgttcc 658
              ||||| |||||| ||||||||||||||||
Sbjct: 185039 ttgctgggagctgcaggtggagctgttcc 185011
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>emb|AL663067.14| Mouse DNA sequence from clone RP23-23G3 on chromosome 2, complete
              sequence
          Length = 193057

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 382    atcctcttccatcatttcttc 402
              |||||||||||||||||||||
Sbjct: 168751 atcctcttccatcatttcttc 168771
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 81      cgccggcgcggggcttgagcttct 104
               |||||||||||| |||||||||||
Sbjct: 2255866 cgccggcgcgggtcttgagcttct 2255889
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>gb|BC077793.1| Xenopus laevis oxidative-stress responsive 1, mRNA (cDNA clone
            MGC:80398 IMAGE:5154747), complete cds
          Length = 2317

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 391  catcatttcttcagactcca 410
            ||||||||||||||||||||
Sbjct: 1316 catcatttcttcagactcca 1335
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>gb|AY588319.1| PRRSV LV4.2.1, complete genome
          Length = 15146

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 257   gtcgatggcaacctcgtcac 276
             ||||||||||||||||||||
Sbjct: 14004 gtcgatggcaacctcgtcac 14023
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 228     ccgccgcctgtcggtgtggt 247
               ||||||||||||||||||||
Sbjct: 3471486 ccgccgcctgtcggtgtggt 3471505
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>gb|AY743933.1| Porcine reproductive and respiratory syndrome virus isolate IT57
           GP5 gene, complete cds
          Length = 606

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 257 gtcgatggcaacctcgtcac 276
           ||||||||||||||||||||
Sbjct: 511 gtcgatggcaacctcgtcac 530
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>gb|AY633973.1| Porcine reproductive and respiratory syndrome virus isolate B13
           major envelope glycoprotein gene, complete cds
          Length = 606

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 257 gtcgatggcaacctcgtcac 276
           ||||||||||||||||||||
Sbjct: 511 gtcgatggcaacctcgtcac 530
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    ccgccgcctgtcggtgtggt 247
              ||||||||||||||||||||
Sbjct: 507720 ccgccgcctgtcggtgtggt 507739
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>gb|AY526909.1| Bordetella phage BIP-1, complete genome
          Length = 42638

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 244  tggtagccacggcgtcgatg 263
            ||||||||||||||||||||
Sbjct: 5621 tggtagccacggcgtcgatg 5640
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>gb|AY526908.1| Bordetella phage BMP-1, complete genome
          Length = 42663

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 244  tggtagccacggcgtcgatg 263
            ||||||||||||||||||||
Sbjct: 5621 tggtagccacggcgtcgatg 5640
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>gb|AY029185.2| Bordetella phage BPP-1, complete genome
          Length = 42493

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 244  tggtagccacggcgtcgatg 263
            ||||||||||||||||||||
Sbjct: 5621 tggtagccacggcgtcgatg 5640
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>gb|AY518540.1| Homo sapiens CDC5 cell division cycle 5-like (S. pombe) (CDC5L) gene,
             complete cds
          Length = 63393

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   aaatgtaacataaatgactc 339
             ||||||||||||||||||||
Sbjct: 34560 aaatgtaacataaatgactc 34541
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>gb|AC131738.3| Mus musculus BAC clone RP23-94E15 from 16, complete sequence
          Length = 199386

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 423    caccatgcatcacatcctct 442
              ||||||||||||||||||||
Sbjct: 112086 caccatgcatcacatcctct 112105
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>gb|DQ477805.1| Porcine respiratory and reproductive syndrome virus isolate
           PRRSV0003791 envelope glycoprotein gene, complete cds
          Length = 606

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 257 gtcgatggcaacctcgtcac 276
           ||||||||||||||||||||
Sbjct: 511 gtcgatggcaacctcgtcac 530
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>gb|AC135606.17| Medicago truncatula clone mth2-10j1, complete sequence
          Length = 118120

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 391    catcatttcttcagactcca 410
              ||||||||||||||||||||
Sbjct: 103800 catcatttcttcagactcca 103819
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>emb|AL590431.11| Human DNA sequence from clone RP11-205M9 on chromosome 1 Contains the
             5' end of the gene for nuclear pore membrane glycoprotein
             210-like (LOC91181), the TPM3 gene for tropomyosin 3, a
             novel gene, the gene for NICE-3 protein (NICE-3), the gene
             for NICE-4 protein (NICE-4) and a CpG island, complete
             sequence
          Length = 119460

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 600   actgaaaaccataattcaca 619
             ||||||||||||||||||||
Sbjct: 89632 actgaaaaccataattcaca 89613
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>emb|AL354980.16| Human DNA sequence from clone RP11-137P24 on chromosome 1 Contains the
             gene for HS1 binding protein (HAX1) and the 5' end of the
             AQP10 gene for aquaporin 10, complete sequence
          Length = 95571

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 600   actgaaaaccataattcaca 619
             ||||||||||||||||||||
Sbjct: 13090 actgaaaaccataattcaca 13071
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>emb|AL353588.25| Human DNA sequence from clone RP11-444E17 on chromosome 6 Contains the
              gene for a novel protein (possible ortholog of mouse
              TCTE1), the gene for novel protein (KIAA1270), a novel
              gene, the 5' end of a novel gene (possible ortholog of
              rodent CDC5-like protein), the 3' part of a novel gene and
              three CpG islands, complete sequence
          Length = 145947

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    aaatgtaacataaatgactc 339
              ||||||||||||||||||||
Sbjct: 143536 aaatgtaacataaatgactc 143517
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>emb|AL136526.27| Human DNA sequence from clone RP11-151A6 on chromosome 13q32.21-33.3
             Contains the 3' end of the PCCA gene for propionyl
             Coenzyme A carboxylase alpha polypeptide, the 3' end of a
             novel gene, a novel gene for a protein similar to
             ribosomal protein 26, the 3' end of a novel gene, a novel
             gene and a CpG island, complete sequence
          Length = 179804

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 405   actccacatctgccccttca 424
             ||||||||||||||||||||
Sbjct: 44468 actccacatctgccccttca 44487
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    ccgccgcctgtcggtgtggt 247
              ||||||||||||||||||||
Sbjct: 316335 ccgccgcctgtcggtgtggt 316354
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>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 75     ggccgccgccggcgcggggcttga 98
              |||||||||| |||||||||||||
Sbjct: 195240 ggccgccgcccgcgcggggcttga 195263
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>gb|AC156023.2| Mus musculus BAC clone RP23-210I15 from chromosome 16, complete sequence
          Length = 196765

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    ccaactatcaactgaagaaa 312
              ||||||||||||||||||||
Sbjct: 190414 ccaactatcaactgaagaaa 190395
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>gb|AC153131.5| Mus musculus BAC clone RP24-356O12 from chromosome 19, complete sequence
          Length = 184864

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 592    aatgccaaactgaaaaccataatt 615
              |||||||||||| |||||||||||
Sbjct: 125831 aatgccaaactggaaaccataatt 125854
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>emb|BX510309.11| Zebrafish DNA sequence from clone DKEY-252L17 in linkage group 5,
             complete sequence
          Length = 86558

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 637   gagcttcaggtggagctgtt 656
             ||||||||||||||||||||
Sbjct: 25156 gagcttcaggtggagctgtt 25137
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>emb|BX510949.10| Zebrafish DNA sequence from clone DKEY-97E19 in linkage group 5, complete
              sequence
          Length = 109001

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 637    gagcttcaggtggagctgtt 656
              ||||||||||||||||||||
Sbjct: 104795 gagcttcaggtggagctgtt 104776
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>emb|BX119905.13| Zebrafish DNA sequence from clone CH211-209H17, complete sequence
          Length = 50366

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   ccataaatgtaacataaatg 335
             ||||||||||||||||||||
Sbjct: 49796 ccataaatgtaacataaatg 49815
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>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    tcctcttccatcatttcttc 402
              ||||||||||||||||||||
Sbjct: 371308 tcctcttccatcatttcttc 371289
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>dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111
          Length = 2356219

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 616     cacaaacactccttttgctc 635
               ||||||||||||||||||||
Sbjct: 1528855 cacaaacactccttttgctc 1528836
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>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome
          Length = 2694756

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 607    accataattcacaaacactccttt 630
              |||||||||||||||| |||||||
Sbjct: 435302 accataattcacaaaccctccttt 435325
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 615      tcacaaacactccttttgct 634
                ||||||||||||||||||||
Sbjct: 24168632 tcacaaacactccttttgct 24168651
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>gb|AC009969.10| Homo sapiens BAC clone RP11-418G17 from 2, complete sequence
          Length = 166892

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 613   attcacaaacactccttttg 632
             ||||||||||||||||||||
Sbjct: 70420 attcacaaacactccttttg 70401
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>gb|M96262.2|LEYPOLYENV Lelystad virus, complete genome
          Length = 15111

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 257   gtcgatggcaacctcgtcac 276
             ||||||||||||||||||||
Sbjct: 14004 gtcgatggcaacctcgtcac 14023
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>gb|AF253536.1|AF253536 Porcine reproductive and respiratory syndrome virus isolate V-547
           major envelope glycoprotein GP5 gene, complete cds
          Length = 606

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 257 gtcgatggcaacctcgtcac 276
           ||||||||||||||||||||
Sbjct: 511 gtcgatggcaacctcgtcac 530
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>gb|AF253535.1|AF253535 Porcine reproductive and respiratory syndrome virus isolate V-546
           major envelope glycoprotein GP5 gene, complete cds
          Length = 606

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 257 gtcgatggcaacctcgtcac 276
           ||||||||||||||||||||
Sbjct: 511 gtcgatggcaacctcgtcac 530
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>gb|AF253534.1|AF253534 Porcine reproductive and respiratory syndrome virus isolate V-548
           major envelope glycoprotein GP5 gene, complete cds
          Length = 606

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 257 gtcgatggcaacctcgtcac 276
           ||||||||||||||||||||
Sbjct: 511 gtcgatggcaacctcgtcac 530
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>gb|AF253533.1|AF253533 Porcine reproductive and respiratory syndrome virus isolate V-516
           major envelope glycoprotein GP5 gene, complete cds
          Length = 606

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 257 gtcgatggcaacctcgtcac 276
           ||||||||||||||||||||
Sbjct: 511 gtcgatggcaacctcgtcac 530
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>gb|AF253532.1|AF253532 Porcine reproductive and respiratory syndrome virus isolate V-502
           major envelope glycoprotein GP5 gene, complete cds
          Length = 606

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 257 gtcgatggcaacctcgtcac 276
           ||||||||||||||||||||
Sbjct: 511 gtcgatggcaacctcgtcac 530
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>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0417G12
          Length = 163568

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 615    tcacaaacactccttttgct 634
              ||||||||||||||||||||
Sbjct: 102090 tcacaaacactccttttgct 102109
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>gb|AC154794.2| Mus musculus BAC clone RP24-485J1 from 16, complete sequence
          Length = 179257

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   ccaactatcaactgaagaaa 312
             ||||||||||||||||||||
Sbjct: 26074 ccaactatcaactgaagaaa 26055
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>gb|AC132618.3| Mus musculus BAC clone RP23-238K12 from 6, complete sequence
          Length = 155828

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   ctgccccttcaccatgcatc 433
             ||||||||||||||||||||
Sbjct: 98143 ctgccccttcaccatgcatc 98124


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,550,596
Number of Sequences: 3902068
Number of extensions: 5550596
Number of successful extensions: 121768
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121227
Number of HSP's gapped (non-prelim): 541
length of query: 683
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 660
effective length of database: 17,143,297,704
effective search space: 11314576484640
effective search space used: 11314576484640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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