ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10f14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ491818.1|OSA491818 Oryza sativa (japonica cultivar-group) ... 272 1e-69
2ref|XM_464321.1| Oryza sativa (japonica cultivar-group), mRNA 250 5e-63
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
4dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
5dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
6emb|AJ491817.1|OSA491817 Oryza sativa (japonica cultivar-group) ... 131 3e-27
7dbj|AK120889.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 9e-06
8dbj|AK109852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 9e-06
9emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 46 0.14
10dbj|AB234305.1| Phragmites australis e-PhaHKT1 mRNA for high-aff... 46 0.14
11dbj|AB234304.1| Phragmites australis n-PhaHKT1 mRNA for high-aff... 46 0.14
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
13gb|AF237672.1|AF237672 Arabidopsis thaliana sodium transporter (... 46 0.14
14emb|AJ491853.1|OSA491853 Oryza sativa (japonica cultivar-group) ... 46 0.14
15gb|AF176035.1|AF176035 Eucalyptus camaldulensis potassium-sodium... 44 0.55
16emb|Z81084.1|CEF46A9 Caenorhabditis elegans Cosmid F46A9, comple... 42 2.2
17gb|AF367366.1|AF367366 Mesembryanthemum crystallinum putative po... 42 2.2
18gb|AC115877.13| Mus musculus chromosome 15, clone RP24-358H21, c... 40 8.5
19ref|NM_117099.3| Arabidopsis thaliana HKT1 (HIGH-AFFINITY K+ TRA... 40 8.5
20gb|AC166800.5| Mus musculus chromosome 1, clone RP24-260I21, com... 40 8.5
21emb|AL032618.1|CEY42A5A Caenorhabditis elegans YAC Y42A5A, compl... 40 8.5
22ref|XM_546397.2| PREDICTED: Canis familiaris similar to PR domai... 40 8.5
23ref|XM_851849.1| PREDICTED: Canis familiaris similar to PR domai... 40 8.5
24gb|AC118728.12| Mus musculus chromosome 1, clone RP24-168F13, co... 40 8.5
25emb|AL445569.1| Human DNA sequence from clone RP11-135M8 on chro... 40 8.5
26gb|AC009509.7| Homo sapiens 12p11-37.2-54.4 BAC RP11-1060J15 (Ro... 40 8.5
27gb|AC100843.2| Homo sapiens chromosome 18, clone RP11-640A1, com... 40 8.5
28emb|BX323050.6| Zebrafish DNA sequence from clone DKEYP-1G12 in ... 40 8.5
29gb|AF298900.1|AF298900 Homo sapiens clone 390j15 chromosome 18 m... 40 8.5
30ref|NM_073420.1| Caenorhabditis elegans Y42A5A.2 (Y42A5A.2) mRNA... 40 8.5
31emb|BX827043.1|CNS0A3C1 Arabidopsis thaliana Full-length cDNA Co... 40 8.5
32emb|BX826395.1|CNS0A3DM Arabidopsis thaliana Full-length cDNA Co... 40 8.5
33gb|BT005751.1| Arabidopsis thaliana clone RAFL15-31-F16 (R50120)... 40 8.5
34ref|XM_576373.1| PREDICTED: Rattus norvegicus similar to PR doma... 40 8.5
35gb|AC161879.5| Mus musculus BAC clone RP23-264A15 from chromosom... 40 8.5

>emb|AJ491818.1|OSA491818 Oryza sativa (japonica cultivar-group) mRNA for putative sodium
            transporter (hkt6 gene)
          Length = 1679

 Score =  272 bits (137), Expect = 1e-69
 Identities = 410/501 (81%)
 Strand = Plus / Minus

                                                                        
Query: 127  gatgctatctaagcttccatgcttttcctcccttcaaattggacgccttaagcctcccga 186
            |||| |||||||||||||| ||| |||| |||||||  ||  |||  |||||||||||||
Sbjct: 1655 gatgttatctaagcttccaggctcttccacccttcatgttaaacgttttaagcctcccga 1596

                                                                        
Query: 187  agaccatgacaatgatcagaatcattttcccctcgttgctccatcttccagcaaacccat 246
            | | |||||| |||||||| |||  |||||| | || ||||||| | || |||||||| |
Sbjct: 1595 aaagcatgacgatgatcaggatcgctttcccattgtcgctccatttccccgcaaacccgt 1536

                                                                        
Query: 247  atgaagcatccttgcagcgtaggtcttgtttgagtagcctcttgcagctgtaacccattg 306
            | || |||||||||||||||   || || || |||||||||||||||||||| || |  |
Sbjct: 1535 acgaggcatccttgcagcgtgcatcatggttcagtagcctcttgcagctgtagccaaccg 1476

                                                                        
Query: 307  acaagcccacgtttccatatgcacttacaacttcgaacagtatgctcaaaacattgaaat 366
            | || ||||| |||||||||||||| || ||||| |||| |||||| |||||||||||||
Sbjct: 1475 agaaccccacatttccatatgcactgacgacttcaaacaatatgctgaaaacattgaaat 1416

                                                                        
Query: 367  taagtggatctgtggtcagtgcttctcgctcagtgatgcaaattagcatgacaaagatag 426
            ||||||||||||| | ||  |  || || || ||||||||||||||||| ||||||||||
Sbjct: 1415 taagtggatctgtagccatcgagtcccgttctgtgatgcaaattagcattacaaagatag 1356

                                                                        
Query: 427  ccaaataagacaactgggacaagatccagtcctccaacaacccttttctgttgtatctct 486
            ||||||||||||  || || |||||||||| |||||| | ||||||||| |||| | |||
Sbjct: 1355 ccaaataagacatatgtgagaagatccagttctccaatagcccttttcttttgtttatct 1296

                                                                        
Query: 487  tctcgtccttagaataccgatcgtcgtaattgggtaaaaatgatgtgtaaccgggaagat 546
            |||||  |||||||| |  | | || |   |||||||||| || |||||||| || ||||
Sbjct: 1295 tctcggtcttagaatcctcaccatcatgtctgggtaaaaacgaagtgtaaccagggagat 1236

                                                                        
Query: 547  acatcatgacggtgtataggactattattgccgaagagatgctcgacagatccacaatag 606
            ||||||||| ||||||||||||||  ||||| ||||||| | | ||||||||   || ||
Sbjct: 1235 acatcatgatggtgtataggactaggattgctgaagagaggtttgacagatctgtaacag 1176

                                 
Query: 607  attcaccagcatgcctcgcat 627
            ||||||| |||||||| ||||
Sbjct: 1175 attcacctgcatgcctagcat 1155



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>ref|XM_464321.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1593

 Score =  250 bits (126), Expect = 5e-63
 Identities = 404/496 (81%), Gaps = 3/496 (0%)
 Strand = Plus / Minus

                                                                        
Query: 132  tatctaagcttccatgcttttcctcccttcaaattggacgccttaagcctcccgaagacc 191
            |||||||||||||| ||| |||| |||||||  ||  |||  |||||||||||||| | |
Sbjct: 1592 tatctaagcttccaggctcttccacccttcatgttaaacgttttaagcctcccgaaaagc 1533

                                                                        
Query: 192  atgacaatgatcagaatcattttcccctcgttgctccatcttccagcaaacccatatgaa 251
            ||||| |||||||| |||  |||||| | || ||||||| | || |||||||| || || 
Sbjct: 1532 atgacgatgatcaggatcgctttcccattgtcgctccatttccccgcaaacccgtacgag 1473

                                                                        
Query: 252  gcatccttgcagcgtaggtcttgtttgagtagcctcttgcagctgtaacccattgacaag 311
            |||||||||||||||   || || || |||||||||||||||||||| || |  || || 
Sbjct: 1472 gcatccttgcagcgtgcatcatggttcagtagcctcttgcagctgtagccaaccgagaac 1413

                                                                        
Query: 312  cccacgtttccatatgcacttacaacttcgaacagtatgctcaaaacattgaaattaagt 371
            ||||| ||||||||||||   || ||||| |||| |||||| ||||||||||||||||||
Sbjct: 1412 cccacatttccatatgca---acgacttcaaacaatatgctgaaaacattgaaattaagt 1356

                                                                        
Query: 372  ggatctgtggtcagtgcttctcgctcagtgatgcaaattagcatgacaaagatagccaaa 431
            |||||||| | ||  |  || || || ||||||||||||||||| |||||||||||||||
Sbjct: 1355 ggatctgtagccatcgagtcccgttctgtgatgcaaattagcattacaaagatagccaaa 1296

                                                                        
Query: 432  taagacaactgggacaagatccagtcctccaacaacccttttctgttgtatctcttctcg 491
            |||||||  || || |||||||||| |||||| | ||||||||| |||| | ||||||||
Sbjct: 1295 taagacatatgtgagaagatccagttctccaatagcccttttcttttgtttatcttctcg 1236

                                                                        
Query: 492  tccttagaataccgatcgtcgtaattgggtaaaaatgatgtgtaaccgggaagatacatc 551
              |||||||| |  | | || |   |||||||||| || |||||||| || |||||||||
Sbjct: 1235 gtcttagaatcctcaccatcatgtctgggtaaaaacgaagtgtaaccagggagatacatc 1176

                                                                        
Query: 552  atgacggtgtataggactattattgccgaagagatgctcgacagatccacaatagattca 611
            |||| ||||||||||||||  ||||| ||||||| | | ||||||||   || |||||||
Sbjct: 1175 atgatggtgtataggactaggattgctgaagagaggtttgacagatctgtaacagattca 1116

                            
Query: 612  ccagcatgcctcgcat 627
            || |||||||| ||||
Sbjct: 1115 cctgcatgcctagcat 1100



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  131 bits (66), Expect = 3e-27
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                           
Query: 336     acttcgaacagtatgctcaaaacattgaaattaagtggatctgtggtcagtgcttctcgc 395
               ||||| |||| |||||| |||||||||||||||||||||||||| | ||  |  || || 
Sbjct: 4105327 acttcaaacaatatgctgaaaacattgaaattaagtggatctgtagccatcgagtcccgt 4105268

                                                                           
Query: 396     tcagtgatgcaaattagcatgacaaagatagccaaataagacaactgggacaagatccag 455
               || ||||||||||||||||| ||||||||||||||||||||||  || || |||||||||
Sbjct: 4105267 tctgtgatgcaaattagcattacaaagatagccaaataagacatatgtgagaagatccag 4105208

                                                             
Query: 456     tcctccaacaacccttttctgttgtatctcttctcgtccttagaat 501
               | |||||| | ||||||||| |||| | ||||||||  ||||||||
Sbjct: 4105207 ttctccaatagcccttttcttttgtttatcttctcggtcttagaat 4105162



 Score =  105 bits (53), Expect = 2e-19
 Identities = 167/205 (81%)
 Strand = Plus / Minus

                                                                           
Query: 127     gatgctatctaagcttccatgcttttcctcccttcaaattggacgccttaagcctcccga 186
               |||| |||||||||||||| ||| |||| |||||||  ||  |||  |||||||||||||
Sbjct: 4105630 gatgttatctaagcttccaggctcttccacccttcatgttaaacgttttaagcctcccga 4105571

                                                                           
Query: 187     agaccatgacaatgatcagaatcattttcccctcgttgctccatcttccagcaaacccat 246
               | | |||||| |||||||| |||  |||||| | || ||||||| | || |||||||| |
Sbjct: 4105570 aaagcatgacgatgatcaggatcgctttcccattgtcgctccatttccccgcaaacccgt 4105511

                                                                           
Query: 247     atgaagcatccttgcagcgtaggtcttgtttgagtagcctcttgcagctgtaacccattg 306
               | || |||||||||||||||   || || || |||||||||||||||||||| || |  |
Sbjct: 4105510 acgaggcatccttgcagcgtgcatcatggttcagtagcctcttgcagctgtagccaaccg 4105451

                                        
Query: 307     acaagcccacgtttccatatgcact 331
               | || ||||| ||||||||||||||
Sbjct: 4105450 agaaccccacatttccatatgcact 4105426



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                           
Query: 546     tacatcatgacggtgtataggactattattgccgaagagatgctcgacagatccacaata 605
               |||||||||| ||||||||||||||  ||||| ||||||| | | ||||||||   || |
Sbjct: 4104619 tacatcatgatggtgtataggactaggattgctgaagagaggtttgacagatctgtaaca 4104560

                                     
Query: 606     gattcaccagcatgcctcgcat 627
               |||||||| |||||||| ||||
Sbjct: 4104559 gattcacctgcatgcctagcat 4104538



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>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1077_E05
          Length = 116305

 Score =  131 bits (66), Expect = 3e-27
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                         
Query: 336   acttcgaacagtatgctcaaaacattgaaattaagtggatctgtggtcagtgcttctcgc 395
             ||||| |||| |||||| |||||||||||||||||||||||||| | ||  |  || || 
Sbjct: 15341 acttcaaacaatatgctgaaaacattgaaattaagtggatctgtagccatcgagtcccgt 15282

                                                                         
Query: 396   tcagtgatgcaaattagcatgacaaagatagccaaataagacaactgggacaagatccag 455
             || ||||||||||||||||| ||||||||||||||||||||||  || || |||||||||
Sbjct: 15281 tctgtgatgcaaattagcattacaaagatagccaaataagacatatgtgagaagatccag 15222

                                                           
Query: 456   tcctccaacaacccttttctgttgtatctcttctcgtccttagaat 501
             | |||||| | ||||||||| |||| | ||||||||  ||||||||
Sbjct: 15221 ttctccaatagcccttttcttttgtttatcttctcggtcttagaat 15176



 Score =  105 bits (53), Expect = 2e-19
 Identities = 167/205 (81%)
 Strand = Plus / Minus

                                                                         
Query: 127   gatgctatctaagcttccatgcttttcctcccttcaaattggacgccttaagcctcccga 186
             |||| |||||||||||||| ||| |||| |||||||  ||  |||  |||||||||||||
Sbjct: 15644 gatgttatctaagcttccaggctcttccacccttcatgttaaacgttttaagcctcccga 15585

                                                                         
Query: 187   agaccatgacaatgatcagaatcattttcccctcgttgctccatcttccagcaaacccat 246
             | | |||||| |||||||| |||  |||||| | || ||||||| | || |||||||| |
Sbjct: 15584 aaagcatgacgatgatcaggatcgctttcccattgtcgctccatttccccgcaaacccgt 15525

                                                                         
Query: 247   atgaagcatccttgcagcgtaggtcttgtttgagtagcctcttgcagctgtaacccattg 306
             | || |||||||||||||||   || || || |||||||||||||||||||| || |  |
Sbjct: 15524 acgaggcatccttgcagcgtgcatcatggttcagtagcctcttgcagctgtagccaaccg 15465

                                      
Query: 307   acaagcccacgtttccatatgcact 331
             | || ||||| ||||||||||||||
Sbjct: 15464 agaaccccacatttccatatgcact 15440



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                         
Query: 546   tacatcatgacggtgtataggactattattgccgaagagatgctcgacagatccacaata 605
             |||||||||| ||||||||||||||  ||||| ||||||| | | ||||||||   || |
Sbjct: 14633 tacatcatgatggtgtataggactaggattgctgaagagaggtttgacagatctgtaaca 14574

                                   
Query: 606   gattcaccagcatgcctcgcat 627
             |||||||| |||||||| ||||
Sbjct: 14573 gattcacctgcatgcctagcat 14552



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>dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0073A21
          Length = 170051

 Score =  131 bits (66), Expect = 3e-27
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                          
Query: 336    acttcgaacagtatgctcaaaacattgaaattaagtggatctgtggtcagtgcttctcgc 395
              ||||| |||| |||||| |||||||||||||||||||||||||| | ||  |  || || 
Sbjct: 151993 acttcaaacaatatgctgaaaacattgaaattaagtggatctgtagccatcgagtcccgt 151934

                                                                          
Query: 396    tcagtgatgcaaattagcatgacaaagatagccaaataagacaactgggacaagatccag 455
              || ||||||||||||||||| ||||||||||||||||||||||  || || |||||||||
Sbjct: 151933 tctgtgatgcaaattagcattacaaagatagccaaataagacatatgtgagaagatccag 151874

                                                            
Query: 456    tcctccaacaacccttttctgttgtatctcttctcgtccttagaat 501
              | |||||| | ||||||||| |||| | ||||||||  ||||||||
Sbjct: 151873 ttctccaatagcccttttcttttgtttatcttctcggtcttagaat 151828



 Score =  105 bits (53), Expect = 2e-19
 Identities = 167/205 (81%)
 Strand = Plus / Minus

                                                                          
Query: 127    gatgctatctaagcttccatgcttttcctcccttcaaattggacgccttaagcctcccga 186
              |||| |||||||||||||| ||| |||| |||||||  ||  |||  |||||||||||||
Sbjct: 152296 gatgttatctaagcttccaggctcttccacccttcatgttaaacgttttaagcctcccga 152237

                                                                          
Query: 187    agaccatgacaatgatcagaatcattttcccctcgttgctccatcttccagcaaacccat 246
              | | |||||| |||||||| |||  |||||| | || ||||||| | || |||||||| |
Sbjct: 152236 aaagcatgacgatgatcaggatcgctttcccattgtcgctccatttccccgcaaacccgt 152177

                                                                          
Query: 247    atgaagcatccttgcagcgtaggtcttgtttgagtagcctcttgcagctgtaacccattg 306
              | || |||||||||||||||   || || || |||||||||||||||||||| || |  |
Sbjct: 152176 acgaggcatccttgcagcgtgcatcatggttcagtagcctcttgcagctgtagccaaccg 152117

                                       
Query: 307    acaagcccacgtttccatatgcact 331
              | || ||||| ||||||||||||||
Sbjct: 152116 agaaccccacatttccatatgcact 152092



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                          
Query: 546    tacatcatgacggtgtataggactattattgccgaagagatgctcgacagatccacaata 605
              |||||||||| ||||||||||||||  ||||| ||||||| | | ||||||||   || |
Sbjct: 151285 tacatcatgatggtgtataggactaggattgctgaagagaggtttgacagatctgtaaca 151226

                                    
Query: 606    gattcaccagcatgcctcgcat 627
              |||||||| |||||||| ||||
Sbjct: 151225 gattcacctgcatgcctagcat 151204



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>emb|AJ491817.1|OSA491817 Oryza sativa (japonica cultivar-group) partial hkt6 gene for putative
            sodium transporter, exons 1-3
          Length = 3157

 Score =  131 bits (66), Expect = 3e-27
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                        
Query: 336  acttcgaacagtatgctcaaaacattgaaattaagtggatctgtggtcagtgcttctcgc 395
            ||||| |||| |||||| |||||||||||||||||||||||||| | ||  |  || || 
Sbjct: 2365 acttcaaacaatatgctgaaaacattgaaattaagtggatctgtagccatcgagtcccgt 2306

                                                                        
Query: 396  tcagtgatgcaaattagcatgacaaagatagccaaataagacaactgggacaagatccag 455
            || ||||||||||||||||| ||||||||||||||||||||||  || || |||||||||
Sbjct: 2305 tctgtgatgcaaattagcattacaaagatagccaaataagacatatgtgagaagatccag 2246

                                                          
Query: 456  tcctccaacaacccttttctgttgtatctcttctcgtccttagaat 501
            | |||||| | ||||||||| |||| | ||||||||  ||||||||
Sbjct: 2245 ttctccaatagcccttttcttttgtttatcttctcggtcttagaat 2200



 Score =  105 bits (53), Expect = 2e-19
 Identities = 167/205 (81%)
 Strand = Plus / Minus

                                                                        
Query: 127  gatgctatctaagcttccatgcttttcctcccttcaaattggacgccttaagcctcccga 186
            |||| |||||||||||||| ||| |||| |||||||  ||  |||  |||||||||||||
Sbjct: 2668 gatgttatctaagcttccaggctcttccacccttcatgttaaacgttttaagcctcccga 2609

                                                                        
Query: 187  agaccatgacaatgatcagaatcattttcccctcgttgctccatcttccagcaaacccat 246
            | | |||||| |||||||| |||  |||||| | || ||||||| | || |||||||| |
Sbjct: 2608 aaagcatgacgatgatcaggatcgctttcccattgtcgctccatttccccgcaaacccgt 2549

                                                                        
Query: 247  atgaagcatccttgcagcgtaggtcttgtttgagtagcctcttgcagctgtaacccattg 306
            | || |||||||||||||||   || || || |||||||||||||||||||| || |  |
Sbjct: 2548 acgaggcatccttgcagcgtgcatcatggttcagtagcctcttgcagctgtagccaaccg 2489

                                     
Query: 307  acaagcccacgtttccatatgcact 331
            | || ||||| ||||||||||||||
Sbjct: 2488 agaaccccacatttccatatgcact 2464



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                        
Query: 546  tacatcatgacggtgtataggactattattgccgaagagatgctcgacagatccacaata 605
            |||||||||| ||||||||||||||  ||||| ||||||| | | ||||||||   || |
Sbjct: 1657 tacatcatgatggtgtataggactaggattgctgaagagaggtttgacagatctgtaaca 1598

                                  
Query: 606  gattcaccagcatgcctcgcat 627
            |||||||| |||||||| ||||
Sbjct: 1597 gattcacctgcatgcctagcat 1576



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>dbj|AK120889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029F13, full
            insert sequence
          Length = 2267

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 289  tgcagctgtaacccattgacaagcccacgtttccatatgcacttacaacttcga 342
            |||| ||||| |||||||| || ||||| |||||||||||||| ||||||||||
Sbjct: 1427 tgcaactgtagcccattgagaaccccacatttccatatgcactgacaacttcga 1374



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>dbj|AK109852.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F09, full
            insert sequence
          Length = 1723

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 289  tgcagctgtaacccattgacaagcccacgtttccatatgcacttacaacttcga 342
            |||| ||||| |||||||| || ||||| |||||||||||||| ||||||||||
Sbjct: 1429 tgcaactgtagcccattgagaaccccacatttccatatgcactgacaacttcga 1376



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>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
             complete sequence
          Length = 179798

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 289   tgcagctgtaacccattgacaagcccacgtttccatatgcact 331
             |||| ||||| |||||||| || ||||| ||||||||||||||
Sbjct: 36451 tgcaactgtagcccattgagaaccccacatttccatatgcact 36493



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>dbj|AB234305.1| Phragmites australis e-PhaHKT1 mRNA for high-affinity potassium
            transporter, complete cds
          Length = 1906

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 171  gccttaagcctcccgaagaccatgacaatgatcagaatcattttcccctcgttgctcca 229
            ||||| ||||||||  ||| |||||||| |||||| ||||  ||||| |||||||||||
Sbjct: 1644 gccttgagcctcccatagagcatgacaaagatcagcatcaacttcccttcgttgctcca 1586



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>dbj|AB234304.1| Phragmites australis n-PhaHKT1 mRNA for high-affinity potassium
            transporter, complete cds
          Length = 1828

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 171  gccttaagcctcccgaagaccatgacaatgatcagaatcattttcccctcgttgctcca 229
            ||||| ||||||||  ||| |||||||| |||||| ||||  ||||| |||||||||||
Sbjct: 1566 gccttgagcctcccatagagcatgacaaagatcagcatcaacttcccttcgttgctcca 1508



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 289      tgcagctgtaacccattgacaagcccacgtttccatatgcact 331
                |||| ||||| |||||||| || ||||| ||||||||||||||
Sbjct: 30769029 tgcaactgtagcccattgagaaccccacatttccatatgcact 30769071



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>gb|AF237672.1|AF237672 Arabidopsis thaliana sodium transporter (HKT1) mRNA, complete cds
          Length = 1521

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 312  cccacgtttccatatgcacttacaacttcga 342
            |||||||||||||||||||| | ||||||||
Sbjct: 1325 cccacgtttccatatgcactgataacttcga 1295



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>emb|AJ491853.1|OSA491853 Oryza sativa (japonica cultivar-group) partial hkt7 gene for putative
            sodium transporter, exons 1-3
          Length = 5400

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 289  tgcagctgtaacccattgacaagcccacgtttccatatgcact 331
            |||| ||||| |||||||| || ||||| ||||||||||||||
Sbjct: 4783 tgcaactgtagcccattgagaaccccacatttccatatgcact 4741



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>gb|AF176035.1|AF176035 Eucalyptus camaldulensis potassium-sodium symporter HKT1 mRNA,
            complete cds
          Length = 1992

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 312  cccacgtttccatatgcacttacaacttcgaacagtatgctcaaaacattgaaattaagt 371
            ||||| ||||||||||| ||||| ||||||| ||  ||| |||| || |||||||| || 
Sbjct: 1517 cccacatttccatatgcgcttaccacttcgaccacgatgttcaacacgttgaaattgagg 1458

                  
Query: 372  ggatct 377
            ||||||
Sbjct: 1457 ggatct 1452



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>emb|Z81084.1|CEF46A9 Caenorhabditis elegans Cosmid F46A9, complete sequence
          Length = 29867

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 140   cttccatgcttttcctccctt 160
             |||||||||||||||||||||
Sbjct: 14297 cttccatgcttttcctccctt 14277



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>gb|AF367366.1|AF367366 Mesembryanthemum crystallinum putative potassium-sodium transporter
            mRNA, complete cds
          Length = 1904

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 396  tcagtgatgcaaattagcatgacaaagatagccaaataaga 436
            |||||||||||||  | ||| |||||||||||||| |||||
Sbjct: 1398 tcagtgatgcaaacaatcataacaaagatagccaagtaaga 1358



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>gb|AC115877.13| Mus musculus chromosome 15, clone RP24-358H21, complete sequence
          Length = 169136

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   cagtcctccaacaacccttt 472
             ||||||||||||||||||||
Sbjct: 69111 cagtcctccaacaacccttt 69092



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>ref|NM_117099.3| Arabidopsis thaliana HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1); sodium
            ion transporter AT4G10310 (HKT1) mRNA, complete cds
          Length = 1685

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 315  acgtttccatatgcacttacaacttcga 342
            ||||||||||||||||| | ||||||||
Sbjct: 1346 acgtttccatatgcactgataacttcga 1319



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>gb|AC166800.5| Mus musculus chromosome 1, clone RP24-260I21, complete sequence
          Length = 162752

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   gctatctaagcttccatgct 149
             ||||||||||||||||||||
Sbjct: 78416 gctatctaagcttccatgct 78397



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>emb|AL032618.1|CEY42A5A Caenorhabditis elegans YAC Y42A5A, complete sequence
          Length = 22557

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  cagcaaacccatatgaagca 254
            ||||||||||||||||||||
Sbjct: 4802 cagcaaacccatatgaagca 4821



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>ref|XM_546397.2| PREDICTED: Canis familiaris similar to PR domain containing 10
            isoform 2, transcript variant 1 (LOC489279), mRNA
          Length = 3997

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 606  gattcaccagcatgcctcgc 625
            ||||||||||||||||||||
Sbjct: 2233 gattcaccagcatgcctcgc 2214



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>ref|XM_851849.1| PREDICTED: Canis familiaris similar to PR domain containing 10
            isoform 2, transcript variant 2 (LOC489279), mRNA
          Length = 3985

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 606  gattcaccagcatgcctcgc 625
            ||||||||||||||||||||
Sbjct: 2221 gattcaccagcatgcctcgc 2202



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>gb|AC118728.12| Mus musculus chromosome 1, clone RP24-168F13, complete sequence
          Length = 176970

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 130  gctatctaagcttccatgct 149
            ||||||||||||||||||||
Sbjct: 9390 gctatctaagcttccatgct 9371



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>emb|AL445569.1| Human DNA sequence from clone RP11-135M8 on chromosome 6 Contains the
            5' end of the KCNQ5 gene for potassium voltage-gated
            channel, KQT-like subfamily member 5, the 5' parts of two
            novel genes and a CpG island, complete sequence
          Length = 47057

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 342  aacagtatgctcaaaacatt 361
            ||||||||||||||||||||
Sbjct: 6493 aacagtatgctcaaaacatt 6512



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>gb|AC009509.7| Homo sapiens 12p11-37.2-54.4 BAC RP11-1060J15 (Roswell Park Cancer
              Institute Human BAC Library) complete sequence
          Length = 192690

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 470    ttttctgttgtatctcttct 489
              ||||||||||||||||||||
Sbjct: 130946 ttttctgttgtatctcttct 130965



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>gb|AC100843.2| Homo sapiens chromosome 18, clone RP11-640A1, complete sequence
          Length = 180160

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   gacaaagatagccaaataag 435
             ||||||||||||||||||||
Sbjct: 65246 gacaaagatagccaaataag 65265



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>emb|BX323050.6| Zebrafish DNA sequence from clone DKEYP-1G12 in linkage group 23,
             complete sequence
          Length = 56129

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   acagtatgctcaaaacattg 362
             ||||||||||||||||||||
Sbjct: 33661 acagtatgctcaaaacattg 33642



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>gb|AF298900.1|AF298900 Homo sapiens clone 390j15 chromosome 18 map 18q21, complete sequence
          Length = 180000

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 416    gacaaagatagccaaataag 435
              ||||||||||||||||||||
Sbjct: 136312 gacaaagatagccaaataag 136293



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>ref|NM_073420.1| Caenorhabditis elegans Y42A5A.2 (Y42A5A.2) mRNA, complete cds
          Length = 1923

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  cagcaaacccatatgaagca 254
            ||||||||||||||||||||
Sbjct: 1054 cagcaaacccatatgaagca 1035



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>emb|BX827043.1|CNS0A3C1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB8ZD07 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1660

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 315  acgtttccatatgcacttacaacttcga 342
            ||||||||||||||||| | ||||||||
Sbjct: 1336 acgtttccatatgcactgataacttcga 1309



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>emb|BX826395.1|CNS0A3DM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB21ZB03 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1663

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 315  acgtttccatatgcacttacaacttcga 342
            ||||||||||||||||| | ||||||||
Sbjct: 1333 acgtttccatatgcactgataacttcga 1306



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>gb|BT005751.1| Arabidopsis thaliana clone RAFL15-31-F16 (R50120) putative potassium
            uptake transporter (At4g10310) mRNA, complete cds
          Length = 1705

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 315  acgtttccatatgcacttacaacttcga 342
            ||||||||||||||||| | ||||||||
Sbjct: 1346 acgtttccatatgcactgataacttcga 1319



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>ref|XM_576373.1| PREDICTED: Rattus norvegicus similar to PR domain containing 10
            isoform 2 (LOC500964), mRNA
          Length = 3723

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 606  gattcaccagcatgcctcgc 625
            ||||||||||||||||||||
Sbjct: 2272 gattcaccagcatgcctcgc 2253



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>gb|AC161879.5| Mus musculus BAC clone RP23-264A15 from chromosome 1, complete sequence
          Length = 206995

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 368   aagtggatctgtggtcagtgcttc 391
             |||||||||| |||||||||||||
Sbjct: 99408 aagtggatctttggtcagtgcttc 99431


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,383,577
Number of Sequences: 3902068
Number of extensions: 5383577
Number of successful extensions: 104783
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104625
Number of HSP's gapped (non-prelim): 145
length of query: 627
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 604
effective length of database: 17,143,297,704
effective search space: 10354551813216
effective search space used: 10354551813216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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