ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal6g15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474822.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2415 Score = 89.7 bits (45), Expect = 5e-15 Identities = 96/113 (84%) Strand = Plus / Plus Query: 68 cccaggggccaaccagctcatggctctcgccctccggcgactccgcgttcggtttccgac 127 |||| ||||||| || | ||||||||||||| || ||||||| |||||| || ||||| | Sbjct: 101 cccaagggccaaacaacgcatggctctcgccatcaggcgacttcgcgtttggattccggc 160 Query: 128 aaatggaaggtaactcctcctcgtacctcctcgccatctggttcaacaagatc 180 || || || |||||||||| |||||||||||||||||||||||||||||| Sbjct: 161 ccatcgatggcaactcctccttctacctcctcgccatctggttcaacaagatc 213
>emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0005B05, complete sequence Length = 149134 Score = 89.7 bits (45), Expect = 5e-15 Identities = 96/113 (84%) Strand = Plus / Minus Query: 68 cccaggggccaaccagctcatggctctcgccctccggcgactccgcgttcggtttccgac 127 |||| ||||||| || | ||||||||||||| || ||||||| |||||| || ||||| | Sbjct: 103948 cccaagggccaaacaacgcatggctctcgccatcaggcgacttcgcgtttggattccggc 103889 Query: 128 aaatggaaggtaactcctcctcgtacctcctcgccatctggttcaacaagatc 180 || || || |||||||||| |||||||||||||||||||||||||||||| Sbjct: 103888 ccatcgatggcaactcctccttctacctcctcgccatctggttcaacaagatc 103836 Score = 71.9 bits (36), Expect = 1e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 139 aactcctcctcgtacctcctcgccatctggttcaacaagatccatgaaaagactgtcgtt 198 ||||||||||| ||||| |||||| ||||||||||||||||| ||| ||||| ||||| Sbjct: 93661 aactcctcctcttacctgctcgccgtctggttcaacaagatcgctgacaagaccgtcgtc 93602 Query: 199 tggtacgc 206 |||||||| Sbjct: 93601 tggtacgc 93594 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 139 aactcctcctcgtacctcctcgccatctggttcaacaagatccatgaaaagactgtcgtt 198 ||||||||||| ||||| ||||| ||||||||||||||||| ||| ||||| ||| | Sbjct: 82546 aactcctcctcatacctgctcgctgtctggttcaacaagatcgctgacaagaccgtcatc 82487 Query: 199 tggtacgccaaga 211 ||||| ||||||| Sbjct: 82486 tggtatgccaaga 82474 Score = 46.1 bits (23), Expect = 0.066 Identities = 77/95 (81%) Strand = Plus / Minus Query: 85 tcatggctctcgccctccggcgactccgcgttcggtttccgacaaatggaaggtaactcc 144 |||||||| || ||||| ||||||| ||| || || ||||||| | || || ||| || Sbjct: 67398 tcatggctatcaccctctggcgacttcgcatttggcttccgacctgtagagggcaacacc 67339 Query: 145 tcctcgtacctcctcgccatctggttcaacaagat 179 |||| |||||| ||||| |||||||||||||||| Sbjct: 67338 tccttctacctcatcgccgtctggttcaacaagat 67304
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 89.7 bits (45), Expect = 5e-15 Identities = 96/113 (84%) Strand = Plus / Minus Query: 68 cccaggggccaaccagctcatggctctcgccctccggcgactccgcgttcggtttccgac 127 |||| ||||||| || | ||||||||||||| || ||||||| |||||| || ||||| | Sbjct: 6941077 cccaagggccaaacaacgcatggctctcgccatcaggcgacttcgcgtttggattccggc 6941018 Query: 128 aaatggaaggtaactcctcctcgtacctcctcgccatctggttcaacaagatc 180 || || || |||||||||| |||||||||||||||||||||||||||||| Sbjct: 6941017 ccatcgatggcaactcctccttctacctcctcgccatctggttcaacaagatc 6940965 Score = 71.9 bits (36), Expect = 1e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 139 aactcctcctcgtacctcctcgccatctggttcaacaagatccatgaaaagactgtcgtt 198 ||||||||||| ||||| |||||| ||||||||||||||||| ||| ||||| ||||| Sbjct: 6930790 aactcctcctcttacctgctcgccgtctggttcaacaagatcgctgacaagaccgtcgtc 6930731 Query: 199 tggtacgc 206 |||||||| Sbjct: 6930730 tggtacgc 6930723 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 139 aactcctcctcgtacctcctcgccatctggttcaacaagatccatgaaaagactgtcgtt 198 ||||||||||| ||||| ||||| ||||||||||||||||| ||| ||||| ||| | Sbjct: 6919675 aactcctcctcatacctgctcgctgtctggttcaacaagatcgctgacaagaccgtcatc 6919616 Query: 199 tggtacgccaaga 211 ||||| ||||||| Sbjct: 6919615 tggtatgccaaga 6919603 Score = 46.1 bits (23), Expect = 0.066 Identities = 77/95 (81%) Strand = Plus / Minus Query: 85 tcatggctctcgccctccggcgactccgcgttcggtttccgacaaatggaaggtaactcc 144 |||||||| || ||||| ||||||| ||| || || ||||||| | || || ||| || Sbjct: 6904527 tcatggctatcaccctctggcgacttcgcatttggcttccgacctgtagagggcaacacc 6904468 Query: 145 tcctcgtacctcctcgccatctggttcaacaagat 179 |||| |||||| ||||| |||||||||||||||| Sbjct: 6904467 tccttctacctcatcgccgtctggttcaacaagat 6904433
>dbj|AK100764.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119J06, full insert sequence Length = 2558 Score = 89.7 bits (45), Expect = 5e-15 Identities = 96/113 (84%) Strand = Plus / Minus Query: 68 cccaggggccaaccagctcatggctctcgccctccggcgactccgcgttcggtttccgac 127 |||| ||||||| || | ||||||||||||| || ||||||| |||||| || ||||| | Sbjct: 2433 cccaagggccaaacaacgcatggctctcgccatcaggcgacttcgcgtttggattccggc 2374 Query: 128 aaatggaaggtaactcctcctcgtacctcctcgccatctggttcaacaagatc 180 || || || |||||||||| |||||||||||||||||||||||||||||| Sbjct: 2373 ccatcgatggcaactcctccttctacctcctcgccatctggttcaacaagatc 2321
>emb|AL442110.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0512B01, complete sequence Length = 140069 Score = 89.7 bits (45), Expect = 5e-15 Identities = 96/113 (84%) Strand = Plus / Minus Query: 68 cccaggggccaaccagctcatggctctcgccctccggcgactccgcgttcggtttccgac 127 |||| ||||||| || | ||||||||||||| || ||||||| |||||| || ||||| | Sbjct: 135048 cccaagggccaaacaacgcatggctctcgccatcaggcgacttcgcgtttggattccggc 134989 Query: 128 aaatggaaggtaactcctcctcgtacctcctcgccatctggttcaacaagatc 180 || || || |||||||||| |||||||||||||||||||||||||||||| Sbjct: 134988 ccatcgatggcaactcctccttctacctcctcgccatctggttcaacaagatc 134936 Score = 71.9 bits (36), Expect = 1e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 139 aactcctcctcgtacctcctcgccatctggttcaacaagatccatgaaaagactgtcgtt 198 ||||||||||| ||||| |||||| ||||||||||||||||| ||| ||||| ||||| Sbjct: 123136 aactcctcctcttacctgctcgccgtctggttcaacaagatcgctgagaagaccgtcgtc 123077 Query: 199 tggtacgc 206 |||||||| Sbjct: 123076 tggtacgc 123069 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 139 aactcctcctcgtacctcctcgccatctggttcaacaagatccatgaaaagactgtcgtt 198 |||||||| || ||||| ||||| ||||||||||||||||| ||| ||||||||| | Sbjct: 113278 aactcctcgtcatacctgctcgctgtctggttcaacaagatcgctgacaagactgtcatc 113219 Query: 199 tggtacgccaaga 211 |||||||| |||| Sbjct: 113218 tggtacgcaaaga 113206 Score = 46.1 bits (23), Expect = 0.066 Identities = 77/95 (81%) Strand = Plus / Minus Query: 85 tcatggctctcgccctccggcgactccgcgttcggtttccgacaaatggaaggtaactcc 144 |||||||| || ||||| ||||||| ||| || || ||||||| | || || ||| || Sbjct: 101103 tcatggctatcaccctctggcgacttcgcatttggcttccgacctgtagagggcaacacc 101044 Query: 145 tcctcgtacctcctcgccatctggttcaacaagat 179 |||| |||||| ||||| |||||||||||||||| Sbjct: 101043 tccttctacctcatcgccgtctggttcaacaagat 101009
>ref|XM_474821.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1464 Score = 71.9 bits (36), Expect = 1e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 139 aactcctcctcgtacctcctcgccatctggttcaacaagatccatgaaaagactgtcgtt 198 ||||||||||| ||||| |||||| ||||||||||||||||| ||| ||||| ||||| Sbjct: 175 aactcctcctcttacctgctcgccgtctggttcaacaagatcgctgacaagaccgtcgtc 234 Query: 199 tggtacgc 206 |||||||| Sbjct: 235 tggtacgc 242
>ref|XM_474820.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2436 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 139 aactcctcctcgtacctcctcgccatctggttcaacaagatccatgaaaagactgtcgtt 198 ||||||||||| ||||| ||||| ||||||||||||||||| ||| ||||| ||| | Sbjct: 175 aactcctcctcatacctgctcgctgtctggttcaacaagatcgctgacaagaccgtcatc 234 Query: 199 tggtacgccaaga 211 ||||| ||||||| Sbjct: 235 tggtatgccaaga 247
>dbj|AK065145.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002A21, full insert sequence Length = 2934 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 139 aactcctcctcgtacctcctcgccatctggttcaacaagatccatgaaaagactgtcgtt 198 ||||||||||| ||||| ||||| ||||||||||||||||| ||| ||||| ||| | Sbjct: 2312 aactcctcctcatacctgctcgctgtctggttcaacaagatcgctgacaagaccgtcatc 2253 Query: 199 tggtacgccaaga 211 ||||| ||||||| Sbjct: 2252 tggtatgccaaga 2240
>dbj|AK121955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107M11, full insert sequence Length = 3101 Score = 50.1 bits (25), Expect = 0.004 Identities = 61/73 (83%) Strand = Plus / Minus Query: 139 aactcctcctcgtacctcctcgccatctggttcaacaagatccatgaaaagactgtcgtt 198 ||||||||||| ||||| ||||| |||||| |||||||||| ||| ||||| ||| | Sbjct: 2431 aactcctcctcatacctgctcgctgtctggtccaacaagatcgctgacaagaccgtcatc 2372 Query: 199 tggtacgccaaga 211 ||||| ||||||| Sbjct: 2371 tggtatgccaaga 2359
>ref|XM_474819.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2442 Score = 46.1 bits (23), Expect = 0.066 Identities = 77/95 (81%) Strand = Plus / Plus Query: 85 tcatggctctcgccctccggcgactccgcgttcggtttccgacaaatggaaggtaactcc 144 |||||||| || ||||| ||||||| ||| || || ||||||| | || || ||| || Sbjct: 115 tcatggctatcaccctctggcgacttcgcatttggcttccgacctgtagagggcaacacc 174 Query: 145 tcctcgtacctcctcgccatctggttcaacaagat 179 |||| |||||| ||||| |||||||||||||||| Sbjct: 175 tccttctacctcatcgccgtctggttcaacaagat 209
>ref|XM_753023.1| Ustilago maydis 521 hypothetical protein (UM01969.1) partial mRNA Length = 1401 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 gcagctccgacagcaagtgc 231 |||||||||||||||||||| Sbjct: 941 gcagctccgacagcaagtgc 922 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,256,896 Number of Sequences: 3902068 Number of extensions: 2256896 Number of successful extensions: 39169 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39134 Number of HSP's gapped (non-prelim): 35 length of query: 311 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 289 effective length of database: 17,147,199,772 effective search space: 4955540734108 effective search space used: 4955540734108 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
