ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal10e23 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011J08, complete sequence Length = 157734 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 185 aaaagcgagagcgcgatcaaagggcctagaaccggtggcaaaggaggcggccggctgaaa 244 ||||| |||||| |||||| ||||| ||||| |||||||||||||| |||| ||| ||| Sbjct: 47371 aaaagtgagagcatgatcaaggggccaagaactggtggcaaaggaggtggcctgctaaaa 47312 Query: 245 gcgacgaggggctcgacgttttcatcct 272 || || || ||||||| ||||||||||| Sbjct: 47311 gcaacaagtggctcgatgttttcatcct 47284 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 349 tccattgccaggtttgatttgtctggttgcagtttccac 387 ||||||| ||||||||||||| ||||||||| ||||||| Sbjct: 47114 tccattgacaggtttgatttgcctggttgcattttccac 47076
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 185 aaaagcgagagcgcgatcaaagggcctagaaccggtggcaaaggaggcggccggctgaaa 244 ||||| |||||| |||||| ||||| ||||| |||||||||||||| |||| ||| ||| Sbjct: 29137903 aaaagtgagagcatgatcaaggggccaagaactggtggcaaaggaggtggcctgctaaaa 29137844 Query: 245 gcgacgaggggctcgacgttttcatcct 272 || || || ||||||| ||||||||||| Sbjct: 29137843 gcaacaagtggctcgatgttttcatcct 29137816 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 349 tccattgccaggtttgatttgtctggttgcagtttccac 387 ||||||| ||||||||||||| ||||||||| ||||||| Sbjct: 29137646 tccattgacaggtttgatttgcctggttgcattttccac 29137608
>gb|AC135357.3| Mus musculus chromosome 8 clone RP24-84L15, complete sequence Length = 175089 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 tgatgtgtacaacttccgagtata 78 |||||||||||||| ||||||||| Sbjct: 5576 tgatgtgtacaactgccgagtata 5553
>gb|AC134930.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0042J17, complete sequence Length = 124139 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 catttcttgtcttcatcagt 171 |||||||||||||||||||| Sbjct: 84221 catttcttgtcttcatcagt 84202
>gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 241022 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 tctcatgcttctggggagtt 325 |||||||||||||||||||| Sbjct: 176552 tctcatgcttctggggagtt 176533
>gb|AC096916.2| Homo sapiens chromosome 3 clone RP11-92I24, complete sequence Length = 163539 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tcttgtcttcatcagtagac 175 |||||||||||||||||||| Sbjct: 152447 tcttgtcttcatcagtagac 152466
>gb|AC092052.2| Homo sapiens chromosome 3 clone RP11-329N16, complete sequence Length = 203204 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tcttgtcttcatcagtagac 175 |||||||||||||||||||| Sbjct: 5575 tcttgtcttcatcagtagac 5594
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 catttcttgtcttcatcagt 171 |||||||||||||||||||| Sbjct: 21366899 catttcttgtcttcatcagt 21366880
>gb|AC093316.28| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202i7, complete sequence Length = 226567 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 tctcatgcttctggggagtt 325 |||||||||||||||||||| Sbjct: 131848 tctcatgcttctggggagtt 131867
>gb|AC170603.2| Mus musculus BAC clone RP23-140J10 from chromosome 8, complete sequence Length = 221596 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 tgatgtgtacaacttccgagtata 78 |||||||||||||| ||||||||| Sbjct: 166977 tgatgtgtacaactgccgagtata 166954 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,751,102 Number of Sequences: 3902068 Number of extensions: 2751102 Number of successful extensions: 54285 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54243 Number of HSP's gapped (non-prelim): 42 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
