>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding|
           protein-associated factor 2S) (Transcription factor
           CA150)
          Length = 1098

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
 Frame = -3

Query: 398 PVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPTISTRHKQEEV 219
           P T  P    + +  S+T S T+ ++ T   +               A T+ST   Q++ 
Sbjct: 261 PTTSSPAPAVSTSTSSSTPSSTTSTTTTATSV---------------AQTVSTPTTQDQT 305

Query: 218 PPAAPVLATPRLSTHPSMFTGLRLRLPTM-LPQPPRPRVTIYLPFTHFQPST 66
           P +A  +ATP +    S+ T  R   P   +PQP    +   +P +  QP+T
Sbjct: 306 PSSAVSVATPTV----SVSTPARTATPVQTVPQPHPQTLPPAVPHSVPQPTT 353

>DAG1_RABIT (Q28685) Dystroglycan precursor (Dystrophin-associated glycoprotein|
           1) [Contains: Alpha-dystroglycan (Alpha-DG);
           Beta-dystroglycan (Beta-DG)]
          Length = 895

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
 Frame = -3

Query: 398 PVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQS------QLKLMTTAPTISTR 237
           PV G+P         +T   G  I + TL  I+  +++ +      Q++   T P     
Sbjct: 361 PVPGKPTV-------TTRTRGAIIQTPTLGPIQPTRVSDAGTVVSGQIRATVTIPGY-VE 412

Query: 236 HKQEEVPPAA----PVLATPRLSTHPSMFTGLRLRLPTMLPQPPR--PRVTIYLPFTHFQ 75
                 PP      P ++TP+ +T  +  +    R PT  P+ PR  PRVT   P T  +
Sbjct: 413 PTAVATPPTTTTKKPRVSTPKPATPSTDSSATTTRRPTKKPRTPRPVPRVTTKAPITRLE 472

Query: 74  ---PSTRSLT 54
              P TR  T
Sbjct: 473 TASPPTRIRT 482

>CGP1_SCHPO (P87049) G1/S-specific cyclin pas1|
          Length = 411

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
 Frame = -3

Query: 431 SSSPARL*VYAPVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAP 252
           SSSP      +P+    P+ T ++  ST  S  S+      Q+    + ++ ++    + 
Sbjct: 219 SSSPQTTQDSSPILTMAPS-TPVSVGSTPPSTPSVLP-IAKQLAPMNVCKAHIQASNQSR 276

Query: 251 TISTRHKQEEVPPAAPVLATPRLSTHPSMFTGL--RLRLPTMLPQPPR-PRVTIYLPFT 84
           T++T    E++P     L  P++  +P +  G    L  P  LP  P  P+V +Y P T
Sbjct: 277 TLTTASPPEQIP-----LMEPQVYVNPQVLPGRLSSLSKPVSLPPTPSSPKVGVYRPMT 330

>DAG1_CANFA (Q9TSZ6) Dystroglycan precursor (Dystrophin-associated glycoprotein|
           1) [Contains: Alpha-dystroglycan (Alpha-DG);
           Beta-dystroglycan (Beta-DG)]
          Length = 892

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
 Frame = -3

Query: 407 VYAPVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPTISTRHKQ 228
           +  P  G P   T ++E  TT  G    + T+           +   + T PT +T+   
Sbjct: 374 IQTPTLG-PIQPTRVSEAGTTVPGQIRPTMTIP-------GYVEPTAVATPPTTTTKK-- 423

Query: 227 EEVPPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPR--PRVTIYLPFTHFQ---PSTR 63
                  P ++TP+ +T  +  +    R PT  P+ PR  PRVT   P T  +   P TR
Sbjct: 424 -------PRVSTPKPATPSTDSSTTTTRRPTKKPRTPRPVPRVTTKAPITRLETASPPTR 476

Query: 62  SLT 54
             T
Sbjct: 477 IRT 479

>FTF1B_DROME (Q05192) Nuclear hormone receptor FTZ-F1 beta (dHR39)|
          Length = 808

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 31/103 (30%), Positives = 41/103 (39%)
 Frame = -3

Query: 362 TERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPTISTRHKQEEVPPAAPVLATPRL 183
           TE    A    I  +   Q   Q  A ++LK+   APT S     +  PP      +P L
Sbjct: 172 TELENIAGEMQIQEKCYPQSNTQHHAATKLKV---APTQSDPINLKFEPPLGD--NSPLL 226

Query: 182 STHPSMFTGLRLRLPTMLPQPPRPRVTIYLPFTHFQPSTRSLT 54
           +      +G  L LPT     P P   I+  +TH  PS   LT
Sbjct: 227 AARSKSSSGGHLPLPTN----PSPDSAIHSVYTHSSPSQSPLT 265

>WASF1_HUMAN (Q92558) Wiskott-Aldrich syndrome protein family member 1|
           (WASP-family protein member 1) (WAVE-1 protein)
           (Verprolin homology domain-containing protein 1)
          Length = 559

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = -3

Query: 221 VPPAAPV----LATPRLSTHPSMFTGLRLRLPTMLPQPPRPRVTIYLPFTHFQPSTRSLT 54
           + P++PV    LA P    HP+  T     +P M P PP   +    P  H  PST  + 
Sbjct: 437 IRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIPASEPKRH--PSTLPV- 493

Query: 53  VCVMDFASARSLLLE 9
                 + ARS+LLE
Sbjct: 494 -----ISDARSVLLE 503

>Y577_TREPA (O83586) Hypothetical protein TP0577|
          Length = 614

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 218 PPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPRP 111
           PPA+  LA+P   THP +F   R     +L  PP P
Sbjct: 77  PPASSFLASPAAPTHP-LFATARTTAAQLLSTPPAP 111

>CD2_HUMAN (P06729) T-cell surface antigen CD2 precursor (T-cell surface|
           antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Erythrocyte
           receptor) (Rosette receptor)
          Length = 351

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -3

Query: 296 QQLAQSQLKLMTTAPTISTRH---KQEEVPPAAPVLATPRLSTHPSMFTGLRLRLPTMLP 126
           Q+  ++  +L T A  ++T     K +++P + P    P  S HP    G R + P+  P
Sbjct: 240 QRSRRNDEELETRAHRVATEERGRKPQQIPASTP--QNPATSQHPPPPPGHRSQAPSHRP 297

Query: 125 QPPRPRV 105
            PP  RV
Sbjct: 298 PPPGHRV 304

>DAG1_MOUSE (Q62165) Dystroglycan precursor (Dystrophin-associated glycoprotein|
           1) [Contains: Alpha-dystroglycan (Alpha-DG);
           Beta-dystroglycan (Beta-DG)]
          Length = 893

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = -3

Query: 260 TAPTISTRHKQEEVPPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPR--PRVTIYLPF 87
           T PT +T+          P ++TP+ +T  +  +    R PT  P+ PR  PRVT   P 
Sbjct: 416 TPPTTTTKK---------PRVSTPKPATPSTDSSTTTTRRPTKKPRTPRPVPRVTTKAPI 466

Query: 86  THFQ---PSTRSLT 54
           T  +   P TR  T
Sbjct: 467 TRLETASPPTRIRT 480

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 34/135 (25%), Positives = 46/135 (34%)
 Frame = -3

Query: 452  PSTKP*RSSSPARL*VYAPVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQSQL 273
            P+T P   SSP         T  PP  T  T   TT   + I++ T              
Sbjct: 1677 PTTTP---SSPIT------TTPSPPTTTMTTPSPTTTPSSPITTTTTPS----------- 1716

Query: 272  KLMTTAPTISTRHKQEEVPPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPRPRVTIYL 93
               TT P+          P   P   T  ++T P   T   L   T  P PP      + 
Sbjct: 1717 --STTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPL---TTTPLPPSITPPTFS 1771

Query: 92   PFTHFQPSTRSLTVC 48
            PF+   P+T  + +C
Sbjct: 1772 PFSTTTPTTPCVPLC 1786

>DAG1_HUMAN (Q14118) Dystroglycan precursor (Dystrophin-associated glycoprotein|
           1) [Contains: Alpha-dystroglycan (Alpha-DG);
           Beta-dystroglycan (Beta-DG)]
          Length = 895

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
 Frame = -3

Query: 407 VYAPVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPTISTRHKQ 228
           +  P  G P   T ++E  TT  G    + T+           +   + T PT +T+   
Sbjct: 377 IQTPTLG-PIQPTRVSEAGTTVPGQIRPTMTIP-------GYVEPTAVATPPTTTTKK-- 426

Query: 227 EEVPPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPR--PRVTIYLPFTHFQ---PSTR 63
                  P ++TP+ +T  +  T    R PT  P+ PR  PRVT  +  T  +   P TR
Sbjct: 427 -------PRVSTPKPATPSTDSTTTTTRRPTKKPRTPRPVPRVTTKVSITRLETASPPTR 479

Query: 62  SLT 54
             T
Sbjct: 480 IRT 482

>VE2_HPV05 (P06921) Regulatory protein E2|
          Length = 514

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
 Frame = +1

Query: 4   HYSXSNERALAKSITHTVKDLVDG--WKCVKGR*IVTRGRG----------GWGSMVGRR 147
           H S S  R+ +KS THT +           K R + +R R           G G    RR
Sbjct: 272 HRSRSRSRSRSKSQTHTTRSTTRSRSTSLTKTRALTSRSRSRGRSPTTCRRGGGRSPRRR 331

Query: 148 SRSPVNIDGCVLRR 189
           SRSP     C  +R
Sbjct: 332 SRSPSTSSSCTTQR 345

>WASF1_MOUSE (Q8R5H6) Wiskott-Aldrich syndrome protein family member 1|
           (WASP-family protein member 1) (WAVE-1 protein)
          Length = 559

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 24/70 (34%), Positives = 29/70 (41%)
 Frame = -3

Query: 218 PPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPRPRVTIYLPFTHFQPSTRSLTVCVMD 39
           P A   LA P    HP+  T      P M P PP   +    P  H  PST  +      
Sbjct: 442 PVAVAALAHPPSGLHPAPSTAPGPHAPLMPPSPPSQVLPASEPKRH--PSTLPV------ 493

Query: 38  FASARSLLLE 9
            + ARS+LLE
Sbjct: 494 ISDARSVLLE 503

>AUTS2_HUMAN (Q8WXX7) Autism susceptibility gene 2 protein|
          Length = 1259

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 12/121 (9%)
 Frame = -3

Query: 443 KP*RSSSPARL*VY-APVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQSQLKL 267
           +P R  SP +L     P     P+  +L++  +  + +S+S  +L+  R    A++Q   
Sbjct: 360 RPPRPQSPTQLLHQNLPPVQAHPSAQSLSQPLSAYNSSSLSLNSLSSSRSSTPAKTQ--- 416

Query: 266 MTTAPTISTRHKQEEVPPAA-----------PVLATPRLSTHPSMFTGLRLRLPTMLPQP 120
              AP   + H      P +           P L  P  S HP+MF       PT LP P
Sbjct: 417 --PAPPHISHHPSASPFPLSLPNHSPLHSFTPTLQPPAHSHHPNMFAP-----PTALPPP 469

Query: 119 P 117
           P
Sbjct: 470 P 470

>TYSY_PSEAE (Q9I6F1) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)|
          Length = 264

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +2

Query: 284 ELAAAT*FVRAFLMKLRSLMQSLIFPLTPSNSAAFRLREHILTVWQDW 427
           +LAA    V      L+S++  L++ L  S + A+ L+EH +++W +W
Sbjct: 37  DLAAGFPLVTTKKCHLKSIVHELLWFLKGSTNIAY-LKEHGVSIWDEW 83

>SPD3_MOUSE (Q6P6N5) Sprouty-related, EVH1 domain-containing protein 3|
           (Spred-3)
          Length = 408

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
 Frame = -3

Query: 368 ALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPT-ISTRHKQEEVPPAAPVLAT 192
           AL+  S T S +S SS        Q  A++   L +   +  S+ H ++E PP AP+   
Sbjct: 112 ALSRGSLTPSSSSSSSSPS-----QDTAETPCPLTSHVDSDSSSSHSRQETPPTAPIATV 166

Query: 191 PRLSTHPSMFTGLRLRLPTMLPQPPRPRVTIYLPFTHFQPSTRSL 57
              +  P + T  + R  +    PP       LPFT     + SL
Sbjct: 167 ESAAAFP-LATRPQRRRSSAQSYPP------LLPFTGIPEPSESL 204

>TCRG1_MOUSE (Q8CGF7) Transcription elongation regulator 1 (TATA box-binding|
           protein-associated factor 2S) (Transcription factor
           CA150) (p144) (Formin-binding protein 28) (FBP 28)
          Length = 1100

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
 Frame = -3

Query: 434 RSSSPARL*VYAPVTGRP-PN*TALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTT 258
           ++ + A+  V A   G P P  ++     +T++ TS  S T A         +     + 
Sbjct: 244 QAQAQAQAQVQAQAVGAPTPTTSSPAPAVSTSTPTSTPSSTTA---------TTTTATSV 294

Query: 257 APTISTRHKQEEVPPAAPVLATPRLSTHPSMFTGLRLR-LPTMLPQPPRPRVTIYLP 90
           A T+ST   Q++ P +A  +ATP +S      T   ++ +P   PQ   P V   +P
Sbjct: 295 AQTVSTPTTQDQTPSSAVSVATPTVSVSAPAPTATPVQTVPQPHPQTLPPAVPHSVP 351

>PTP99_DROME (P35832) Tyrosine-protein phosphatase 99A precursor (EC 3.1.3.48)|
            (Receptor-linked protein-tyrosine phosphatase 99A)
            (DPTP99A)
          Length = 1301

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
 Frame = -3

Query: 308  QIR*QQLAQSQLKLMTTAPTISTRHKQEEVPPAAPVLATPRLSTHPSMFTGLRLRLPTML 129
            Q+   QL Q  L+          + +Q++       ++TP   T+PS+   L L  PT+ 
Sbjct: 1062 QLHMLQLQQQHLETQQQQQQQQQQQQQQQQTALNETVSTPSTDTNPSLLPILSLLPPTVA 1121

Query: 128  P-------QPPRPRVTIYLPFTHFQPSTRS 60
            P        PP P      P    Q S+ S
Sbjct: 1122 PLSSSSSTTPPTPSTPTPQPPQTIQLSSHS 1151

>LRIG3_MOUSE (Q6P1C6) Leucine-rich repeats and immunoglobulin-like domains protein|
            3 precursor
          Length = 1117

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 99   DCNPRP-RGLGKHGRETEPESSEH*RVRTEAGGSQHRRCWRHLLLLVPGTDCR 254
            DC PRP  G      E + ES E+ + RT+     HR  ++ +       DC+
Sbjct: 1059 DCQPRPCHGKSLSSPELDSESEENDKERTDFREENHRCTYQQIFHTYRTPDCQ 1111

>ARMX4_HUMAN (Q5H9R4) Armadillo repeat-containing X-linked protein 4|
          Length = 360

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = -3

Query: 218 PPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQP 120
           PP A V+A   L T  S  TGL  +LP  LPQP
Sbjct: 58  PPEAAVVAFEWLKT--STLTGLHPQLPLSLPQP 88

>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 227  EEVPPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPRPRVTIYLPF 87
            ++ PP+    A P  S HP +     L LP  +P PP P     +PF
Sbjct: 1054 QQTPPSMMPGAVPG-SGHPGVAGNAPLGLPFGMPPPPPPPAPSIIPF 1099

>NEUR4_HUMAN (Q8WWR8) Sialidase-4 (EC 3.2.1.18) (N-acetyl-alpha-neuraminidase 4)|
          Length = 484

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -3

Query: 200 LATPRLSTHPSMF----TGLRLRLPTMLPQPPRPRVTIYL 93
           +  PR  +   +F    TGL  R+P++LP PP P +  ++
Sbjct: 1   MGVPRTPSRTVLFERERTGLTYRVPSLLPVPPGPTLLAFV 40

>ZCC2_HUMAN (Q7Z2W4) Zinc finger CCCH type antiviral protein 1 (Zinc finger|
           CCCH type domain-containing protein 2)
          Length = 902

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 51  YCQRPC*WLEVCK----GKIDCNPRPRGLGKHGRETEPESS 161
           YCQRPC  L +CK    G+ + +   R L K+  E   E +
Sbjct: 77  YCQRPCDNLHLCKLNLLGRCNYSQSERNLCKYSHEVLSEEN 117

>SOX30_HUMAN (O94993) Transcription factor SOX-30|
          Length = 753

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = -3

Query: 269 LMTTAPTISTRHKQEEVPPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPRPRVTIYLP 90
           +++T PT    ++        P L  P   THP   T   ++LPT   Q P        P
Sbjct: 431 IISTNPTTVYPYRSPTYSVVIPSLQNP--ITHPVGETSPAIQLPTPAVQSPS-------P 481

Query: 89  FTHFQPSTRSLT-VCVMD 39
            T FQPS  S   V V D
Sbjct: 482 VTLFQPSVSSAAQVAVQD 499

>BT1A1_BOVIN (P18892) Butyrophilin subfamily 1 member A1 precursor (BT)|
          Length = 526

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 70  DGWKCVKGR*IVTRGRGGWGSMVGRRS 150
           D W CV GR   T GR  W   VG R+
Sbjct: 342 DSWPCVMGREAFTSGRHYWEVEVGDRT 368


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,129,648
Number of Sequences: 219361
Number of extensions: 1143156
Number of successful extensions: 3808
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3799
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)