ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal6g09 |
|---|---|
| Clone Library Name | barley_pub |
>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel| [Contains: Glutamic acid-rich protein (GARP); Cyclic-nucleotide-gated cation channel 4 (CNG channel 4) (CNG-4) (Cyclic nucleotide-gated cation channel modulatory subunit)] Length = 1394 Score = 34.3 bits (77), Expect = 0.31 Identities = 24/87 (27%), Positives = 42/87 (48%) Frame = +2 Query: 128 EHDRADEQPSRDGREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEHGRGHCGCA 307 E + +E+ +GRE+ + ++ E+ G + E++ G DE+ + + E GRG Sbjct: 378 EEEEGEEKEEEEGREKEEEEG-EKKEEEGREKEEEEGGEKEDEEGREKEEEEGRG----- 431 Query: 308 LDEAEESQVLGLGEQSELLQRGERDAE 388 E EE GE+ E RG+ + E Sbjct: 432 -KEEEEG-----GEKEEEEGRGKEEVE 452
>FMRA_CALPA (Q01133) Antho-RFamide neuropeptides precursor [Contains:| Antho-RFamide] Length = 334 Score = 33.5 bits (75), Expect = 0.53 Identities = 25/89 (28%), Positives = 39/89 (43%) Frame = +2 Query: 143 DEQPSRDGREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEHGRGHCGCALDEAE 322 +E R GRE+ EQG R ED +G +E++ R E +G G D+ Sbjct: 158 EEDQGRFGREEDQGRFGREEEQGRFGREEDQGRFGREEEQGRFGREEDQGRFGREEDQGR 217 Query: 323 ESQVLGLGEQSELLQRGERDAELLRLGQQ 409 G + E + G+RD + R G++ Sbjct: 218 ------FGREEEQGRFGKRDEDQGRFGKR 240
>Y4651_STRCO (P41109) Putative lipoprotein SCO4651 precursor| Length = 282 Score = 32.3 bits (72), Expect = 1.2 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%) Frame = +2 Query: 50 TGGVSYYKTNIYSINGVKVL-----IVLQSIEHDRADEQPSRDGREQRSNDRLDRYEQGG 214 TG K ++ GVK + L +E ADE + + Q+S L++YE+ G Sbjct: 160 TGAKDVEKVGTETVEGVKTTHYKGTVTLADLEKSLADEDKATRDKRQKS---LEQYEKMG 216 Query: 215 VVRHEDDRGYGGDEQRQRQR 274 V + D GD+Q ++ R Sbjct: 217 VDKLTMDMWVDGDDQTKQFR 236
>VASA_DROME (P09052) ATP-dependent RNA helicase vasa (EC 3.6.1.-) (Antigen| Mab46F11) Length = 661 Score = 32.3 bits (72), Expect = 1.2 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%) Frame = +2 Query: 128 EHDRADEQPSRDGREQRSNDR---LDRYEQGGVVRHEDDRGYGGDEQRQR 268 E++ DE+ R RE+R +R LDR E+GG +RG GG +R+R Sbjct: 134 ENEDGDERRGRLDREERGGERRGRLDREERGG---ERGERGDGGFARRRR 180
>TRHY_SHEEP (P22793) Trichohyalin| Length = 1549 Score = 32.0 bits (71), Expect = 1.6 Identities = 19/58 (32%), Positives = 34/58 (58%) Frame = +2 Query: 116 LQSIEHDRADEQPSRDGREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEHGR 289 L+ +E R +EQ R+ R Q +R +Y + ++R E++R + ++Q QR+ CE R Sbjct: 775 LEKVELQREEEQLQREKRRQ---ERERQYREEELLR-EEERLHRKEQQLQREECEKRR 828 Score = 30.4 bits (67), Expect = 4.5 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 4/93 (4%) Frame = +2 Query: 116 LQSIEHDRA----DEQPSRDGREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEH 283 ++ +E DR ++Q R REQ+ DR + + R E DR + +EQ ++R E Sbjct: 956 IRYLEEDRKFREEEQQLRRLEREQQLRQERDRKFREELSRQERDRKFREEEQLLQEREEQ 1015 Query: 284 GRGHCGCALDEAEESQVLGLGEQSELLQRGERD 382 R D + L E+ E L+R ERD Sbjct: 1016 LRRQ---ERDRKFREEEQLLQEREEQLRRQERD 1045
>BRCA1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 30.8 bits (68), Expect = 3.5 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = +2 Query: 215 VVRHEDDRGYGGDEQRQRQRCEH---GRGHCGCALDEAEESQVLGLGEQSELLQRGERDA 385 +V +++RG G +E Q ++ G GC + + GL QS++L +RD Sbjct: 1340 LVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDT 1399 Query: 386 ---ELLRLGQQ 409 L++L Q+ Sbjct: 1400 MQDNLIKLQQE 1410
>BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein (RING finger| protein 53) Length = 1863 Score = 30.8 bits (68), Expect = 3.5 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = +2 Query: 215 VVRHEDDRGYGGDEQRQRQRCEH---GRGHCGCALDEAEESQVLGLGEQSELLQRGERDA 385 +V +++RG G +E Q ++ G GC + + GL QS++L +RD Sbjct: 1340 LVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDT 1399 Query: 386 ---ELLRLGQQ 409 L++L Q+ Sbjct: 1400 MQHNLIKLQQE 1410
>BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 30.8 bits (68), Expect = 3.5 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = +2 Query: 215 VVRHEDDRGYGGDEQRQRQRCEH---GRGHCGCALDEAEESQVLGLGEQSELLQRGERDA 385 +V +++RG G +E Q ++ G GC + + GL QS++L +RD Sbjct: 1340 LVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDT 1399 Query: 386 ---ELLRLGQQ 409 L++L Q+ Sbjct: 1400 MQDNLIKLQQE 1410
>R4RL2_RAT (Q80WD1) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor| homolog 1) (Nogo-66 receptor-related protein 2) (NgR2) (Nogo receptor-like 3) Length = 420 Score = 30.4 bits (67), Expect = 4.5 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Frame = +2 Query: 197 RYEQGGVVRHEDDR--GYGGDEQRQRQRCEHGRGHCGCALDEAEESQVLGLGEQSELL 364 R QGG EDD GYGG++QR Q C C VL G ++ LL Sbjct: 357 RGRQGGDAPTEDDYWGGYGGEDQRGEQTCP----GAACQAPADSRGPVLSAGLRTPLL 410
>AN32B_SHEEP (Q6A1I3) Acidic leucine-rich nuclear phosphoprotein 32 family| member B (Leucine-rich acidic nuclear protein) (LAN) (Acidic protein rich in leucines) Length = 261 Score = 30.4 bits (67), Expect = 4.5 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 12/97 (12%) Frame = +2 Query: 128 EHDRADEQPSRDGREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEHGRGHCGCA 307 E + D++ DG E+ +D D E V ED+ G+E+ GH G A Sbjct: 173 EGENEDKEEDEDGEEEEFDDEEDDDEDEDVEGEEDEDKVSGEEEE--------FGHDGEA 224 Query: 308 ------------LDEAEESQVLGLGEQSELLQRGERD 382 DE EE G G + E GE D Sbjct: 225 DEDDEDEDEDEDEDEEEEESGKGEGRKRETDDEGEDD 261
>TRI55_RAT (Q5PQN5) Tripartite motif-containing 63 (Muscle-specific RING| finger protein 2) (MuRF2) (MURF-2) (RING finger protein 29) Length = 545 Score = 29.6 bits (65), Expect = 7.7 Identities = 21/76 (27%), Positives = 35/76 (46%) Frame = +2 Query: 164 GREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCEHGRGHCGCALDEAEESQVLGL 343 G E +N ++ + ++R D DE + + E G G ++EAE QV Sbjct: 303 GYEIMNNFTVNLNREEKIIREIDFSREEEDEDDEGEVDEEGEGEDAVEVEEAENVQVASS 362 Query: 344 GEQSELLQRGERDAEL 391 GE+ E L++ +EL Sbjct: 363 GEE-ETLEKAAEPSEL 377
>NSBP1_MOUSE (Q9JL35) Nucleosome-binding protein 1 (Nucleosome-binding protein| 45) (NBP-45) (GARP45 protein) Length = 406 Score = 29.6 bits (65), Expect = 7.7 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 9/97 (9%) Frame = +2 Query: 128 EHDRADEQPSRDGREQ--RSNDRLDRYEQGGVV-RHEDD--RGYGGDEQRQRQRCEHGRG 292 E D ++QP DG+E + + + +E+GG HE+D GG E R+ + G Sbjct: 313 EEDGKEDQPEEDGKEGQCKEDGKEGHHEEGGKEDLHEEDGKEKDGGKEDRKEE------G 366 Query: 293 HCGCALDEAEESQVLGL----GEQSELLQRGERDAEL 391 A+DE + + E + Q GE++ L Sbjct: 367 EQEVAVDEGSDENKVEAEEEGAENKDFKQDGEKEEPL 403
>IF2_RHOS4 (Q3IYN5) Translation initiation factor IF-2| Length = 836 Score = 29.6 bits (65), Expect = 7.7 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +2 Query: 137 RADEQPSRDGREQRSNDRLDRYEQGGVVRHEDDRGYGGDEQRQRQRCE 280 RADE+ R+ QR + L+ E+ R E R DE+R R+ E Sbjct: 98 RADEERQREEERQRRREELEAKEREERERAEALRQKAEDEERARREAE 145 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,030,394 Number of Sequences: 219361 Number of extensions: 1157715 Number of successful extensions: 4171 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3924 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4149 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
