ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal10d07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY111402.1| Zea mays CL15553_1 mRNA sequence Length = 708 Score = 170 bits (86), Expect = 3e-39 Identities = 155/178 (87%) Strand = Plus / Minus Query: 109 atcactcggcagcctttcctttccggcggttgctgccgtctgcggaggctccggtgcccc 168 ||||||| |||||||||||||||||||| ||||| || |||| |||||||||||||| | Sbjct: 480 atcactcagcagcctttcctttccggcgattgctaccacctgctgaggctccggtgcctc 421 Query: 169 ccatctccaccaggtagcagatcatcgagtccatgtcctcgccgaatatactgtaggctt 228 | |||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||| | Sbjct: 420 ctgtctccaacaggtagcagaccatcgagtccacgtcctcgccgaatatgctgtaggcct 361 Query: 229 ccatcacttgcatgtagctaaagcccattgctagaagaacctgcatgctgctagtcag 286 |||| || || |||||||| ||||||||||| || || | ||||||||||| |||||| Sbjct: 360 ccatgacctggatgtagctgaagcccattgcgaggagcaactgcatgctgcgagtcag 303 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 530 cgagaggcctccatcaccatccgctctatttccttctcagttaactccag 579 ||||||| ||||||||||||||| ||||||||| |||| ||||||||||| Sbjct: 145 cgagaggactccatcaccatccgttctatttccctctctgttaactccag 96 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 450 ttgcggcggaagaagatggctctgcccctga 480 |||| ||||| |||||||||||||||||||| Sbjct: 228 ttgctgcggatgaagatggctctgcccctga 198
>gb|AY106870.1| Zea mays PCO096778 mRNA sequence Length = 1188 Score = 170 bits (86), Expect = 3e-39 Identities = 155/178 (87%) Strand = Plus / Minus Query: 109 atcactcggcagcctttcctttccggcggttgctgccgtctgcggaggctccggtgcccc 168 ||||||| |||||||||||||||||||| ||||| ||| | || |||||||||||||| | Sbjct: 1022 atcactcagcagcctttcctttccggcgattgctaccgcccgctgaggctccggtgcctc 963 Query: 169 ccatctccaccaggtagcagatcatcgagtccatgtcctcgccgaatatactgtaggctt 228 | |||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||| | Sbjct: 962 ctgtctccaacaggtagcagaccatcgagtccacgtcctcgccgaatatgctgtaggcct 903 Query: 229 ccatcacttgcatgtagctaaagcccattgctagaagaacctgcatgctgctagtcag 286 |||| || || |||||||| ||||||||||| || || | ||||||||||| |||||| Sbjct: 902 ccatgacctggatgtagctgaagcccattgcgaggagcaactgcatgctgcgagtcag 845 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 530 cgagaggcctccatcaccatccgctctatttccttctcagttaactccag 579 ||||||| ||||||||||||||| ||||||||| |||| ||||||||||| Sbjct: 687 cgagaggactccatcaccatccgttctatttccctctctgttaactccag 638 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 450 ttgcggcggaagaagatggctctgccc 476 |||||||||| |||||||||||||||| Sbjct: 770 ttgcggcggatgaagatggctctgccc 744
>emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000126_13, complete sequence Length = 113960 Score = 149 bits (75), Expect = 1e-32 Identities = 168/199 (84%) Strand = Plus / Minus Query: 109 atcactcggcagcctttcctttccggcggttgctgccgtctgcggaggctccggtgcccc 168 ||||||| ||||| |||||||||| ||| ||||| || |||| |||||||||||||| | Sbjct: 85197 atcactcagcagcttttcctttcctgcgattgctaccacctgcagaggctccggtgcctc 85138 Query: 169 ccatctccaccaggtagcagatcatcgagtccatgtcctcgccgaatatactgtaggctt 228 |||||||||| |||||| ||||||| ||||| | ||||||||| ||||| || ||||||| Sbjct: 85137 ccatctccacaaggtagtagatcattgagtcgacgtcctcgccaaatatgctataggctt 85078 Query: 229 ccatcacttgcatgtagctaaagcccattgctagaagaacctgcatgctgctagtcagca 288 |||| || || |||||| | ||||||||||| || || | ||||||||||| || |||| Sbjct: 85077 ccatgacctggatgtagttgaagcccattgccaggaggagctgcatgctgcgggttagca 85018 Query: 289 cggtgtctgggagtacgaa 307 ||||||| ||||| ||||| Sbjct: 85017 cggtgtccgggagaacgaa 84999 Score = 123 bits (62), Expect = 7e-25 Identities = 121/141 (85%), Gaps = 6/141 (4%) Strand = Plus / Minus Query: 444 gcttacttgcggcggaagaagatggctctgcccctgaccttgatgactttctgaagttaa 503 ||||||| || || ||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 84856 gcttactcgcagcagaagaagatggctctgcccctgatgttgatgactctctgaagttaa 84797 Query: 504 cctgttg------ctggttcagatactctgcccgagaggcctccatcaccatccgctcta 557 ||||| ||| || ||||||||||| || ||||||||||||||||||||||||| Sbjct: 84796 gttgttgttgctgctgctttagatactctgctcgtgaggcctccatcaccatccgctcta 84737 Query: 558 tttccttctcagttaactcca 578 |||||||||| || ||||||| Sbjct: 84736 tttccttctctgtcaactcca 84716
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 149 bits (75), Expect = 1e-32 Identities = 168/199 (84%) Strand = Plus / Minus Query: 109 atcactcggcagcctttcctttccggcggttgctgccgtctgcggaggctccggtgcccc 168 ||||||| ||||| |||||||||| ||| ||||| || |||| |||||||||||||| | Sbjct: 20471777 atcactcagcagcttttcctttcctgcgattgctaccacctgcagaggctccggtgcctc 20471718 Query: 169 ccatctccaccaggtagcagatcatcgagtccatgtcctcgccgaatatactgtaggctt 228 |||||||||| |||||| ||||||| ||||| | ||||||||| ||||| || ||||||| Sbjct: 20471717 ccatctccacaaggtagtagatcattgagtcgacgtcctcgccaaatatgctataggctt 20471658 Query: 229 ccatcacttgcatgtagctaaagcccattgctagaagaacctgcatgctgctagtcagca 288 |||| || || |||||| | ||||||||||| || || | ||||||||||| || |||| Sbjct: 20471657 ccatgacctggatgtagttgaagcccattgccaggaggagctgcatgctgcgggttagca 20471598 Query: 289 cggtgtctgggagtacgaa 307 ||||||| ||||| ||||| Sbjct: 20471597 cggtgtccgggagaacgaa 20471579 Score = 123 bits (62), Expect = 7e-25 Identities = 121/141 (85%), Gaps = 6/141 (4%) Strand = Plus / Minus Query: 444 gcttacttgcggcggaagaagatggctctgcccctgaccttgatgactttctgaagttaa 503 ||||||| || || ||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 20471436 gcttactcgcagcagaagaagatggctctgcccctgatgttgatgactctctgaagttaa 20471377 Query: 504 cctgttg------ctggttcagatactctgcccgagaggcctccatcaccatccgctcta 557 ||||| ||| || ||||||||||| || ||||||||||||||||||||||||| Sbjct: 20471376 gttgttgttgctgctgctttagatactctgctcgtgaggcctccatcaccatccgctcta 20471317 Query: 558 tttccttctcagttaactcca 578 |||||||||| || ||||||| Sbjct: 20471316 tttccttctctgtcaactcca 20471296
>dbj|AK101471.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040K14, full insert sequence Length = 2463 Score = 149 bits (75), Expect = 1e-32 Identities = 168/199 (84%) Strand = Plus / Minus Query: 109 atcactcggcagcctttcctttccggcggttgctgccgtctgcggaggctccggtgcccc 168 ||||||| ||||| |||||||||| ||| ||||| || |||| |||||||||||||| | Sbjct: 2309 atcactcagcagcttttcctttcctgcgattgctaccacctgcagaggctccggtgcctc 2250 Query: 169 ccatctccaccaggtagcagatcatcgagtccatgtcctcgccgaatatactgtaggctt 228 |||||||||| |||||| ||||||| ||||| | ||||||||| ||||| || ||||||| Sbjct: 2249 ccatctccacaaggtagtagatcattgagtcgacgtcctcgccaaatatgctataggctt 2190 Query: 229 ccatcacttgcatgtagctaaagcccattgctagaagaacctgcatgctgctagtcagca 288 |||| || || |||||| | ||||||||||| || || | ||||||||||| || |||| Sbjct: 2189 ccatgacctggatgtagttgaagcccattgccaggaggagctgcatgctgcgggttagca 2130 Query: 289 cggtgtctgggagtacgaa 307 ||||||| ||||| ||||| Sbjct: 2129 cggtgtccgggagaacgaa 2111 Score = 119 bits (60), Expect = 1e-23 Identities = 110/127 (86%), Gaps = 6/127 (4%) Strand = Plus / Minus Query: 458 gaagaagatggctctgcccctgaccttgatgactttctgaagttaacctgttg------c 511 ||||||||||||||||||||||| ||||||||| ||||||||||| ||||| | Sbjct: 2049 gaagaagatggctctgcccctgatgttgatgactctctgaagttaagttgttgttgctgc 1990 Query: 512 tggttcagatactctgcccgagaggcctccatcaccatccgctctatttccttctcagtt 571 || || ||||||||||| || ||||||||||||||||||||||||||||||||||| || Sbjct: 1989 tgctttagatactctgctcgtgaggcctccatcaccatccgctctatttccttctctgtc 1930 Query: 572 aactcca 578 ||||||| Sbjct: 1929 aactcca 1923
>dbj|AK061508.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-F06, full insert sequence Length = 1796 Score = 149 bits (75), Expect = 1e-32 Identities = 168/199 (84%) Strand = Plus / Minus Query: 109 atcactcggcagcctttcctttccggcggttgctgccgtctgcggaggctccggtgcccc 168 ||||||| ||||| |||||||||| ||| ||||| || |||| |||||||||||||| | Sbjct: 1640 atcactcagcagcttttcctttcctgcgattgctaccacctgcagaggctccggtgcctc 1581 Query: 169 ccatctccaccaggtagcagatcatcgagtccatgtcctcgccgaatatactgtaggctt 228 |||||||||| |||||| ||||||| ||||| | ||||||||| ||||| || ||||||| Sbjct: 1580 ccatctccacaaggtagtagatcattgagtcgacgtcctcgccaaatatgctataggctt 1521 Query: 229 ccatcacttgcatgtagctaaagcccattgctagaagaacctgcatgctgctagtcagca 288 |||| || || |||||| | ||||||||||| || || | ||||||||||| || |||| Sbjct: 1520 ccatgacctggatgtagttgaagcccattgccaggaggagctgcatgctgcgggttagca 1461 Query: 289 cggtgtctgggagtacgaa 307 ||||||| ||||| ||||| Sbjct: 1460 cggtgtccgggagaacgaa 1442 Score = 119 bits (60), Expect = 1e-23 Identities = 110/127 (86%), Gaps = 6/127 (4%) Strand = Plus / Minus Query: 458 gaagaagatggctctgcccctgaccttgatgactttctgaagttaacctgttg------c 511 ||||||||||||||||||||||| ||||||||| ||||||||||| ||||| | Sbjct: 1380 gaagaagatggctctgcccctgatgttgatgactctctgaagttaagttgttgttgctgc 1321 Query: 512 tggttcagatactctgcccgagaggcctccatcaccatccgctctatttccttctcagtt 571 || || ||||||||||| || ||||||||||||||||||||||||||||||||||| || Sbjct: 1320 tgctttagatactctgctcgtgaggcctccatcaccatccgctctatttccttctctgtc 1261 Query: 572 aactcca 578 ||||||| Sbjct: 1260 aactcca 1254
>ref|XM_472413.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1653 Score = 147 bits (74), Expect = 5e-32 Identities = 167/198 (84%) Strand = Plus / Minus Query: 110 tcactcggcagcctttcctttccggcggttgctgccgtctgcggaggctccggtgccccc 169 |||||| ||||| |||||||||| ||| ||||| || |||| |||||||||||||| || Sbjct: 1653 tcactcagcagcttttcctttcctgcgattgctaccacctgcagaggctccggtgcctcc 1594 Query: 170 catctccaccaggtagcagatcatcgagtccatgtcctcgccgaatatactgtaggcttc 229 ||||||||| |||||| ||||||| ||||| | ||||||||| ||||| || |||||||| Sbjct: 1593 catctccacaaggtagtagatcattgagtcgacgtcctcgccaaatatgctataggcttc 1534 Query: 230 catcacttgcatgtagctaaagcccattgctagaagaacctgcatgctgctagtcagcac 289 ||| || || |||||| | ||||||||||| || || | ||||||||||| || ||||| Sbjct: 1533 catgacctggatgtagttgaagcccattgccaggaggagctgcatgctgcgggttagcac 1474 Query: 290 ggtgtctgggagtacgaa 307 |||||| ||||| ||||| Sbjct: 1473 ggtgtccgggagaacgaa 1456 Score = 119 bits (60), Expect = 1e-23 Identities = 110/127 (86%), Gaps = 6/127 (4%) Strand = Plus / Minus Query: 458 gaagaagatggctctgcccctgaccttgatgactttctgaagttaacctgttg------c 511 ||||||||||||||||||||||| ||||||||| ||||||||||| ||||| | Sbjct: 1394 gaagaagatggctctgcccctgatgttgatgactctctgaagttaagttgttgttgctgc 1335 Query: 512 tggttcagatactctgcccgagaggcctccatcaccatccgctctatttccttctcagtt 571 || || ||||||||||| || ||||||||||||||||||||||||||||||||||| || Sbjct: 1334 tgctttagatactctgctcgtgaggcctccatcaccatccgctctatttccttctctgtc 1275 Query: 572 aactcca 578 ||||||| Sbjct: 1274 aactcca 1268
>emb|BX511250.8| Zebrafish DNA sequence from clone CH211-57K11 in linkage group 16, complete sequence Length = 189081 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 aaagcccattgctagaagaac 268 ||||||||||||||||||||| Sbjct: 15331 aaagcccattgctagaagaac 15311
>gb|AC149129.3| Medicago truncatula chromosome 7 BAC clone mth2-139m18, complete sequence Length = 106423 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 ctctatttccttctcagtta 572 |||||||||||||||||||| Sbjct: 33165 ctctatttccttctcagtta 33146
>gb|AC146123.2| Pan troglodytes BAC clone RP43-38F11 from 7, complete sequence Length = 185971 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 tataaatttcctcaaacaaa 432 |||||||||||||||||||| Sbjct: 180105 tataaatttcctcaaacaaa 180086
>emb|AL163283.2|HS21C083 Homo sapiens chromosome 21 segment HS21C083 Length = 340000 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 agcatcccagtttcagccaa 391 |||||||||||||||||||| Sbjct: 37177 agcatcccagtttcagccaa 37158
>gb|AE012513.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 421 of 460 of the complete genome Length = 10729 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ccgctgccgccgaaccagat 347 |||||||||||||||||||| Sbjct: 125 ccgctgccgccgaaccagat 144
>dbj|AK022220.1| Homo sapiens cDNA FLJ12158 fis, clone MAMMA1000522 Length = 2190 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ctcggcagcctttcctttcc 132 |||||||||||||||||||| Sbjct: 1914 ctcggcagcctttcctttcc 1895
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ccgctgccgccgaaccagat 347 |||||||||||||||||||| Sbjct: 4725698 ccgctgccgccgaaccagat 4725717
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 413 tataaatttcctcaaacaaaagag 436 |||||| ||||||||||||||||| Sbjct: 3704497 tataaacttcctcaaacaaaagag 3704520
>dbj|BS000163.1| Pan troglodytes chromosome 22 clone:RP43-010B02, map 22, complete sequences Length = 182740 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 agcatcccagtttcagccaa 391 |||||||||||||||||||| Sbjct: 113956 agcatcccagtttcagccaa 113937
>emb|AL136001.6|CNS01DVR Human chromosome 14 DNA sequence BAC R-865F7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 185967 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 aaaagagaaagtatgcttac 449 |||||||||||||||||||| Sbjct: 142471 aaaagagaaagtatgcttac 142490
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 413 tataaatttcctcaaacaaaagag 436 |||||| ||||||||||||||||| Sbjct: 573408 tataaacttcctcaaacaaaagag 573385
>dbj|AP005264.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-64C12, complete sequence Length = 192539 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 ctcggcagcctttcctttcc 132 |||||||||||||||||||| Sbjct: 168183 ctcggcagcctttcctttcc 168202
>emb|AL672184.13| Mouse DNA sequence from clone RP23-421G11 on chromosome X, complete sequence Length = 211206 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 557 atttccttctcagttaactc 576 |||||||||||||||||||| Sbjct: 79099 atttccttctcagttaactc 79118
>emb|AL627074.11| Mouse DNA sequence from clone RP23-465A17 on chromosome 3, complete sequence Length = 177133 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 aagagaaagtatgcttactt 451 |||||||||||||||||||| Sbjct: 16702 aagagaaagtatgcttactt 16683
>gb|AF064863.3| Homo sapiens chromosome 21 clone RP1-111A18 map 21q22.2, complete sequence Length = 135332 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 agcatcccagtttcagccaa 391 |||||||||||||||||||| Sbjct: 90974 agcatcccagtttcagccaa 90955
>emb|AL359399.3|CNS05TEV Human chromosome 14 DNA sequence BAC C-2223O18 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 134213 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 aaaagagaaagtatgcttac 449 |||||||||||||||||||| Sbjct: 122605 aaaagagaaagtatgcttac 122586 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,599,767 Number of Sequences: 3902068 Number of extensions: 4599767 Number of successful extensions: 78823 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78719 Number of HSP's gapped (non-prelim): 104 length of query: 579 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 556 effective length of database: 17,143,297,704 effective search space: 9531673523424 effective search space used: 9531673523424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
