| Clone Name | rbaal10d04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192544.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1056 Score = 373 bits (188), Expect = e-100 Identities = 293/328 (89%) Strand = Plus / Minus Query: 115 acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 174 |||||||| ||||||||||||||||| ||||| ||||| || || || |||||||||||| Sbjct: 1040 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 981 Query: 175 ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 234 ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 980 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 921 Query: 235 tgttcgaatgacaggcgcagcctctttacttcctcctcatagaaggccttgtccaacatc 294 ||||| ||||||| || ||||||| ||||||||||||||||||||||| |||||||| Sbjct: 920 tgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggccttatccaacatt 861 Query: 295 tgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttctccatt 354 || ||||||||||| || || || |||||||||| ||||||||| ||||||||||||||| Sbjct: 860 tggctttccccatacgaaattttggcaaaaatagcctggtatggagggtacttctccatt 801 Query: 355 acaccacgcacctggtcaacatcttcacagacagccaactcttcatgaccatatggaaac 414 |||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||| || Sbjct: 800 acaccacggacctgatcaacatcttcacaaacagccagttcttcatgaccatatggatac 741 Query: 415 aatagaccgaaattggagtacagcttcc 442 |||| ||| || |||||||||||||||| Sbjct: 740 aataaaccaaagttggagtacagcttcc 713
>dbj|AK067605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111L13, full insert sequence Length = 1556 Score = 373 bits (188), Expect = e-100 Identities = 293/328 (89%) Strand = Plus / Minus Query: 115 acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 174 |||||||| ||||||||||||||||| ||||| ||||| || || || |||||||||||| Sbjct: 1156 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 1097 Query: 175 ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 234 ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 1096 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 1037 Query: 235 tgttcgaatgacaggcgcagcctctttacttcctcctcatagaaggccttgtccaacatc 294 ||||| ||||||| || ||||||| ||||||||||||||||||||||| |||||||| Sbjct: 1036 tgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggccttatccaacatt 977 Query: 295 tgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttctccatt 354 || ||||||||||| || || || |||||||||| ||||||||| ||||||||||||||| Sbjct: 976 tggctttccccatacgaaattttggcaaaaatagcctggtatggagggtacttctccatt 917 Query: 355 acaccacgcacctggtcaacatcttcacagacagccaactcttcatgaccatatggaaac 414 |||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||| || Sbjct: 916 acaccacggacctgatcaacatcttcacaaacagccagttcttcatgaccatatggatac 857 Query: 415 aatagaccgaaattggagtacagcttcc 442 |||| ||| || |||||||||||||||| Sbjct: 856 aataaaccaaagttggagtacagcttcc 829 Score = 48.1 bits (24), Expect = 0.025 Identities = 36/40 (90%) Strand = Plus / Minus Query: 38 cgattgtgccatcatcaaagcgggccttttgtacagccat 77 ||||||||||||||||||| | ||| ||||||||| |||| Sbjct: 1233 cgattgtgccatcatcaaacctggcattttgtacaaccat 1194
>gb|AY104603.1| Zea mays PCO113315 mRNA sequence Length = 1601 Score = 317 bits (160), Expect = 2e-83 Identities = 292/336 (86%) Strand = Plus / Minus Query: 112 acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 171 ||||| ||||||||||||| | |||||||||||| || || ||||| |||||||||||| Sbjct: 1259 acgacactgtcatggacccgggacttctggttctgagcgacacattcagagatccacatc 1200 Query: 172 aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 231 | |||||| ||||||||||| || ||||| ||||| || ||||||||||| ||||||||| Sbjct: 1199 aggttcctgatctcctgctcgcggagcctgatgtaagcgaagaaaacagcgtagtggaac 1140 Query: 232 tgctgttcgaatgacaggcgcagcctctttacttcctcctcatagaaggccttgtccaac 291 ||||| || || |||| || |||||||| |||||||||||||| || ||||| |||||| Sbjct: 1139 tgctgctcaaaggacaagcatagcctcttgacttcctcctcataaaatgccttatccaac 1080 Query: 292 atctgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttctcc 351 ||||||||||| |||||||| ||| | | ||| |||||||||||||| |||||||||||| Sbjct: 1079 atctgactttctccatatgaaatcctggaaaatatagactggtatggtgggtacttctcc 1020 Query: 352 attacaccacgcacctggtcaacatcttcacagacagccaactcttcatgaccatatgga 411 ||| ||||||| |||||||||||||||||||| || ||||| ||||| || ||||||||| Sbjct: 1019 attgcaccacgaacctggtcaacatcttcacaaacggccaattcttcgtggccatatgga 960 Query: 412 aacaatagaccgaaattggagtacagcttcctgcgg 447 |||||| ||| || ||||||||||||||||||||| Sbjct: 959 tacaataaaccaaagttggagtacagcttcctgcgg 924 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 38 cgattgtgccatcatcaaagcgggccttttgtaca 72 ||||||||||||||||||||| ||| ||||||||| Sbjct: 1330 cgattgtgccatcatcaaagcaggcattttgtaca 1296
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 151 bits (76), Expect = 2e-33 Identities = 109/120 (90%) Strand = Plus / Plus Query: 115 acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 174 |||||||| ||||||||||||||||| ||||| ||||| || || || |||||||||||| Sbjct: 22852025 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 22852084 Query: 175 ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 234 ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 22852085 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 22852144 Score = 145 bits (73), Expect = 1e-31 Identities = 121/137 (88%) Strand = Plus / Plus Query: 231 ctgctgttcgaatgacaggcgcagcctctttacttcctcctcatagaaggccttgtccaa 290 ||||||||| ||||||| || ||||||| ||||||||||||||||||||||| ||||| Sbjct: 22852686 ctgctgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggccttatccaa 22852745 Query: 291 catctgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttctc 350 ||| || ||||||||||| || || || |||||||||| ||||||||| ||||||||||| Sbjct: 22852746 catttggctttccccatacgaaattttggcaaaaatagcctggtatggagggtacttctc 22852805 Query: 351 cattacaccacgcacct 367 |||||||||||| |||| Sbjct: 22852806 cattacaccacggacct 22852822 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 364 acctggtcaacatcttcacagacagccaactcttcatgaccatatgga 411 ||||| |||||||||||||| ||||||| |||||||||||||||||| Sbjct: 22853737 acctgatcaacatcttcacaaacagccagttcttcatgaccatatgga 22853784 Score = 48.1 bits (24), Expect = 0.025 Identities = 36/40 (90%) Strand = Plus / Plus Query: 38 cgattgtgccatcatcaaagcgggccttttgtacagccat 77 ||||||||||||||||||| | ||| ||||||||| |||| Sbjct: 22851948 cgattgtgccatcatcaaacctggcattttgtacaaccat 22851987
>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0700A11 Length = 136321 Score = 151 bits (76), Expect = 2e-33 Identities = 109/120 (90%) Strand = Plus / Plus Query: 115 acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 174 |||||||| ||||||||||||||||| ||||| ||||| || || || |||||||||||| Sbjct: 55582 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 55641 Query: 175 ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 234 ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 55642 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 55701 Score = 145 bits (73), Expect = 1e-31 Identities = 121/137 (88%) Strand = Plus / Plus Query: 231 ctgctgttcgaatgacaggcgcagcctctttacttcctcctcatagaaggccttgtccaa 290 ||||||||| ||||||| || ||||||| ||||||||||||||||||||||| ||||| Sbjct: 56243 ctgctgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggccttatccaa 56302 Query: 291 catctgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttctc 350 ||| || ||||||||||| || || || |||||||||| ||||||||| ||||||||||| Sbjct: 56303 catttggctttccccatacgaaattttggcaaaaatagcctggtatggagggtacttctc 56362 Query: 351 cattacaccacgcacct 367 |||||||||||| |||| Sbjct: 56363 cattacaccacggacct 56379 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 364 acctggtcaacatcttcacagacagccaactcttcatgaccatatgga 411 ||||| |||||||||||||| ||||||| |||||||||||||||||| Sbjct: 57294 acctgatcaacatcttcacaaacagccagttcttcatgaccatatgga 57341 Score = 48.1 bits (24), Expect = 0.025 Identities = 36/40 (90%) Strand = Plus / Plus Query: 38 cgattgtgccatcatcaaagcgggccttttgtacagccat 77 ||||||||||||||||||| | ||| ||||||||| |||| Sbjct: 55505 cgattgtgccatcatcaaacctggcattttgtacaaccat 55544
>gb|AY843525.1| Ammopiptanthus mongolicus clone N10G17 cold-induced mRNA Length = 453 Score = 99.6 bits (50), Expect = 8e-18 Identities = 140/170 (82%) Strand = Plus / Minus Query: 118 ctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaagttc 177 |||||||| || ||| |||||| ||||| || |||||||| || |||||||| | |||| Sbjct: 274 ctgtcatgaactctggacttctgattctgagccacgcattctgaaatccacattaggttc 215 Query: 178 cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgctgt 237 || ||||||||||| | ||||||||| || || ||||| |||||||| |||||||| || Sbjct: 214 ctgatctcctgctcccttagcctcatatatgcgaagaacacagcataatggaactgttgc 155 Query: 238 tcgaatgacaggcgcagcctctttacttcctcctcatagaaggccttgtc 287 || || | || || |||||||| || |||||||||||||| |||||||| Sbjct: 154 tcaaacgccaagcaaagcctcttcacctcctcctcatagaatgccttgtc 105
>ref|NM_113791.2| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational mechanism / hydrogen-transporting ATPase, rotational mechanism AT3G28710 mRNA, complete cds Length = 1429 Score = 97.6 bits (49), Expect = 3e-17 Identities = 106/125 (84%) Strand = Plus / Minus Query: 112 acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 171 ||||| ||||| |||| |||| |||||||||||| ||||| ||||| || |||||||| Sbjct: 1176 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1117 Query: 172 aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 231 | |||||| ||||||||||||| || |||||| ||||||||||| || || || |||||| Sbjct: 1116 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1057 Query: 232 tgctg 236 ||||| Sbjct: 1056 tgctg 1052 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 346 ttctccattacaccacgcacctggtcaacatcttcacagacagccaactcttcatgacca 405 |||||||| |||||||| |||||||| | ||| || |||| ||| | |||||| |||||| Sbjct: 942 ttctccataacaccacgaacctggtctatatcctcgcagatagcaagctcttcgtgacca 883 Query: 406 tatggaaacaatagaccgaaattggagtacag 437 |||||| | | |||||| || || |||||||| Sbjct: 882 tatggatagagtagaccaaagttagagtacag 851
>gb|BT012808.1| Lycopersicon esculentum clone 113828F, mRNA sequence Length = 1534 Score = 97.6 bits (49), Expect = 3e-17 Identities = 214/269 (79%) Strand = Plus / Minus Query: 115 acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 174 |||||||||||||| ||| | || |||||||| | || ||||| || |||||||| | | Sbjct: 1140 acgctgtcatggactctggttttttggttctgagagacacattcagaaatccacattagg 1081 Query: 175 ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 234 ||||||||||||||||||| ||||| || || | || || ||| ||||||||||||| Sbjct: 1080 ttccttatctcctgctctctcagccttatatatgagaaaaatacaccatagtggaactgt 1021 Query: 235 tgttcgaatgacaggcgcagcctctttacttcctcctcatagaaggccttgtccaacatc 294 ||||| || || | || || | || |||||||| |||||||| |||||||| | |||| Sbjct: 1020 tgttcaaaagataagcaaaggcgtttcacttcctcttcatagaaagccttgtcgagcatc 961 Query: 295 tgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttctccatt 354 || || ||||||||||| | ||| | ||| || || || || ||||||||||| ||||| Sbjct: 960 tggctctccccatatgacaacttagaaaatatggattgataaggggggtacttttccatg 901 Query: 355 acaccacgcacctggtcaacatcttcaca 383 ||||| || ||||| || | ||||||||| Sbjct: 900 acaccgcggacctgatctatatcttcaca 872
>gb|AY142622.1| Arabidopsis thaliana putative adenosine triphosphatase (At3g28710) mRNA, complete cds Length = 1087 Score = 97.6 bits (49), Expect = 3e-17 Identities = 106/125 (84%) Strand = Plus / Minus Query: 112 acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 171 ||||| ||||| |||| |||| |||||||||||| ||||| ||||| || |||||||| Sbjct: 1043 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 984 Query: 172 aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 231 | |||||| ||||||||||||| || |||||| ||||||||||| || || || |||||| Sbjct: 983 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 924 Query: 232 tgctg 236 ||||| Sbjct: 923 tgctg 919 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 346 ttctccattacaccacgcacctggtcaacatcttcacagacagccaactcttcatgacca 405 |||||||| |||||||| |||||||| | ||| || |||| ||| | |||||| |||||| Sbjct: 809 ttctccataacaccacgaacctggtctatatcctcgcagatagcaagctcttcgtgacca 750 Query: 406 tatggaaacaatagaccgaaattggagtacag 437 |||||| | | |||||| || || |||||||| Sbjct: 749 tatggatagagtagaccaaagttagagtacag 718
>gb|AF327534.1| Arabidopsis thaliana putative adenosine triphosphatase (At3g28710) mRNA, complete cds Length = 1421 Score = 97.6 bits (49), Expect = 3e-17 Identities = 106/125 (84%) Strand = Plus / Minus Query: 112 acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 171 ||||| ||||| |||| |||| |||||||||||| ||||| ||||| || |||||||| Sbjct: 1159 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1100 Query: 172 aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 231 | |||||| ||||||||||||| || |||||| ||||||||||| || || || |||||| Sbjct: 1099 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1040 Query: 232 tgctg 236 ||||| Sbjct: 1039 tgctg 1035 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 346 ttctccattacaccacgcacctggtcaacatcttcacagacagccaactcttcatgacca 405 |||||||| |||||||| |||||||| | ||| || |||| ||| | |||||| |||||| Sbjct: 925 ttctccataacaccacgaacctggtctatatcctcgcagatagcaagctcttcgtgacca 866 Query: 406 tatggaaacaatagaccgaaattggagtacag 437 |||||| | | |||||| || || |||||||| Sbjct: 865 tatggatagagtagaccaaagttagagtacag 834
>gb|AY077656.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, complete cds Length = 1056 Score = 97.6 bits (49), Expect = 3e-17 Identities = 106/125 (84%) Strand = Plus / Minus Query: 112 acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 171 ||||| ||||| |||| |||| |||||||||||| ||||| ||||| || |||||||| Sbjct: 1043 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 984 Query: 172 aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 231 | |||||| ||||||||||||| || |||||| ||||||||||| || || || |||||| Sbjct: 983 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 924 Query: 232 tgctg 236 ||||| Sbjct: 923 tgctg 919 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 346 ttctccattacaccacgcacctggtcaacatcttcacagacagccaactcttcatgacca 405 |||||||| |||||||| |||||||| | ||| || |||| ||| | |||||| |||||| Sbjct: 809 ttctccataacaccacgaacctggtctatatcctcgcagatagcaagctcttcgtgacca 750 Query: 406 tatggaaacaatagaccgaaattggagtacag 437 |||||| | | |||||| || || |||||||| Sbjct: 749 tatggatagagtagaccaaagttagagtacag 718
>gb|AY039864.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, complete cds Length = 1429 Score = 97.6 bits (49), Expect = 3e-17 Identities = 106/125 (84%) Strand = Plus / Minus Query: 112 acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 171 ||||| ||||| |||| |||| |||||||||||| ||||| ||||| || |||||||| Sbjct: 1176 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1117 Query: 172 aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 231 | |||||| ||||||||||||| || |||||| ||||||||||| || || || |||||| Sbjct: 1116 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1057 Query: 232 tgctg 236 ||||| Sbjct: 1056 tgctg 1052 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 346 ttctccattacaccacgcacctggtcaacatcttcacagacagccaactcttcatgacca 405 |||||||| |||||||| |||||||| | ||| || |||| ||| | |||||| |||||| Sbjct: 942 ttctccataacaccacgaacctggtctatatcctcgcagatagcaagctcttcgtgacca 883 Query: 406 tatggaaacaatagaccgaaattggagtacag 437 |||||| | | |||||| || || |||||||| Sbjct: 882 tatggatagagtagaccaaagttagagtacag 851
>gb|AF324679.2|AF324679 Arabidopsis thaliana AT3g28710 (AT3g28710/MZN14_20) mRNA, complete cds Length = 1400 Score = 97.6 bits (49), Expect = 3e-17 Identities = 106/125 (84%) Strand = Plus / Minus Query: 112 acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 171 ||||| ||||| |||| |||| |||||||||||| ||||| ||||| || |||||||| Sbjct: 1159 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1100 Query: 172 aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 231 | |||||| ||||||||||||| || |||||| ||||||||||| || || || |||||| Sbjct: 1099 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1040 Query: 232 tgctg 236 ||||| Sbjct: 1039 tgctg 1035 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 346 ttctccattacaccacgcacctggtcaacatcttcacagacagccaactcttcatgacca 405 |||||||| |||||||| |||||||| | ||| || |||| ||| | |||||| |||||| Sbjct: 925 ttctccataacaccacgaacctggtctatatcctcgcagatagcaagctcttcgtgacca 866 Query: 406 tatggaaacaatagaccgaaattggagtacag 437 |||||| | | |||||| || || |||||||| Sbjct: 865 tatggatagagtagaccaaagttagagtacag 834
>gb|AY089082.1| Arabidopsis thaliana clone 29760 mRNA, complete sequence Length = 1363 Score = 97.6 bits (49), Expect = 3e-17 Identities = 106/125 (84%) Strand = Plus / Minus Query: 112 acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 171 ||||| ||||| |||| |||| |||||||||||| ||||| ||||| || |||||||| Sbjct: 1122 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1063 Query: 172 aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 231 | |||||| ||||||||||||| || |||||| ||||||||||| || || || |||||| Sbjct: 1062 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1003 Query: 232 tgctg 236 ||||| Sbjct: 1002 tgctg 998 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 346 ttctccattacaccacgcacctggtcaacatcttcacagacagccaactcttcatgacca 405 |||||||| |||||||| |||||||| | ||| || |||| ||| | |||||| |||||| Sbjct: 888 ttctccataacaccacgaacctggtctatatcctcgcagatagcaagctcttcgtgacca 829 Query: 406 tatggaaacaatagaccgaaattggagtacag 437 |||||| | | |||||| || || |||||||| Sbjct: 828 tatggatagagtagaccaaagttagagtacag 797
>ref|NM_113792.1| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational mechanism / hydrogen-transporting ATPase, rotational mechanism AT3G28715 mRNA, complete cds Length = 1056 Score = 93.7 bits (47), Expect = 5e-16 Identities = 239/303 (78%) Strand = Plus / Minus Query: 135 cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 194 |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| || Sbjct: 1020 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 961 Query: 195 tagcctcatgtacgcaaagaaaacagcatagtggaactgctgttcgaatgacaggcgcag 254 | |||||| ||||||||||| || || || ||||||||||| || || | | || || Sbjct: 960 caacctcatatacgcaaagaataccgcgtaatggaactgctgctcaaaggctaagcaaag 901 Query: 255 cctctttacttcctcctcatagaaggccttgtccaacatctgactttccccatatgatat 314 ||| | ||||| || ||||| || |||||||| | |||||| ||||| ||||| || || Sbjct: 900 ccttctgacttcttcttcataaaatgccttgtcgagcatctggctttctccataagacat 841 Query: 315 ctttgcaaaaatagactggtatggggggtacttctccattacaccacgcacctggtcaac 374 ||| | || |||| || || || ||||| || ||||| |||||||| ||||| || | Sbjct: 840 cttggagaatatagcttgatacggagggtatttttccataacaccacgaacctgatctat 781 Query: 375 atcttcacagacagccaactcttcatgaccatatggaaacaatagaccgaaattggagta 434 |||||||||| ||| | ||| || || ||||||||| | | ||||| || |||||||| Sbjct: 780 gtcttcacagatagcaagctcctcgtggccatatggatagaggagaccaaagttggagta 721 Query: 435 cag 437 ||| Sbjct: 720 cag 718
>gb|BT000154.1| Arabidopsis thaliana Unknown protein (At3g28715) mRNA, complete cds Length = 1207 Score = 93.7 bits (47), Expect = 5e-16 Identities = 239/303 (78%) Strand = Plus / Minus Query: 135 cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 194 |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| || Sbjct: 1020 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 961 Query: 195 tagcctcatgtacgcaaagaaaacagcatagtggaactgctgttcgaatgacaggcgcag 254 | |||||| ||||||||||| || || || ||||||||||| || || | | || || Sbjct: 960 caacctcatatacgcaaagaataccgcgtaatggaactgctgctcaaaggctaagcaaag 901 Query: 255 cctctttacttcctcctcatagaaggccttgtccaacatctgactttccccatatgatat 314 ||| | ||||| || ||||| || |||||||| | |||||| ||||| ||||| || || Sbjct: 900 ccttctgacttcttcttcataaaatgccttgtcgagcatctggctttctccataagacat 841 Query: 315 ctttgcaaaaatagactggtatggggggtacttctccattacaccacgcacctggtcaac 374 ||| | || |||| || || || ||||| || ||||| |||||||| ||||| || | Sbjct: 840 cttggagaatatagcttgatacggagggtatttttccataacaccacgaacctgatctat 781 Query: 375 atcttcacagacagccaactcttcatgaccatatggaaacaatagaccgaaattggagta 434 |||||||||| ||| | ||| || || ||||||||| | | ||||| || |||||||| Sbjct: 780 gtcttcacagatagcaagctcctcgtggccatatggatagaggagaccaaagttggagta 721 Query: 435 cag 437 ||| Sbjct: 720 cag 718
>gb|AY062635.1| Arabidopsis thaliana Unknown protein mRNA, complete cds Length = 1422 Score = 93.7 bits (47), Expect = 5e-16 Identities = 239/303 (78%) Strand = Plus / Minus Query: 135 cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 194 |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| || Sbjct: 1105 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 1046 Query: 195 tagcctcatgtacgcaaagaaaacagcatagtggaactgctgttcgaatgacaggcgcag 254 | |||||| ||||||||||| || || || ||||||||||| || || | | || || Sbjct: 1045 caacctcatatacgcaaagaataccgcgtaatggaactgctgctcaaaggctaagcaaag 986 Query: 255 cctctttacttcctcctcatagaaggccttgtccaacatctgactttccccatatgatat 314 ||| | ||||| || ||||| || |||||||| | |||||| ||||| ||||| || || Sbjct: 985 ccttctgacttcttcttcataaaatgccttgtcgagcatctggctttctccataagacat 926 Query: 315 ctttgcaaaaatagactggtatggggggtacttctccattacaccacgcacctggtcaac 374 ||| | || |||| || || || ||||| || ||||| |||||||| ||||| || | Sbjct: 925 cttggagaatatagcttgatacggagggtatttttccataacaccacgaacctgatctat 866 Query: 375 atcttcacagacagccaactcttcatgaccatatggaaacaatagaccgaaattggagta 434 |||||||||| ||| | ||| || || ||||||||| | | ||||| || |||||||| Sbjct: 865 gtcttcacagatagcaagctcctcgtggccatatggatagaggagaccaaagttggagta 806 Query: 435 cag 437 ||| Sbjct: 805 cag 803
>gb|AF428348.1|AF428348 Arabidopsis thaliana AT3g28715/MZN14_21 mRNA, complete cds Length = 1382 Score = 93.7 bits (47), Expect = 5e-16 Identities = 239/303 (78%) Strand = Plus / Minus Query: 135 cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 194 |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| || Sbjct: 1143 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 1084 Query: 195 tagcctcatgtacgcaaagaaaacagcatagtggaactgctgttcgaatgacaggcgcag 254 | |||||| ||||||||||| || || || ||||||||||| || || | | || || Sbjct: 1083 caacctcatatacgcaaagaataccgcgtaatggaactgctgctcaaaggctaagcaaag 1024 Query: 255 cctctttacttcctcctcatagaaggccttgtccaacatctgactttccccatatgatat 314 ||| | ||||| || ||||| || |||||||| | |||||| ||||| ||||| || || Sbjct: 1023 ccttctgacttcttcttcataaaatgccttgtcgagcatctggctttctccataagacat 964 Query: 315 ctttgcaaaaatagactggtatggggggtacttctccattacaccacgcacctggtcaac 374 ||| | || |||| || || || ||||| || ||||| |||||||| ||||| || | Sbjct: 963 cttggagaatatagcttgatacggagggtatttttccataacaccacgaacctgatctat 904 Query: 375 atcttcacagacagccaactcttcatgaccatatggaaacaatagaccgaaattggagta 434 |||||||||| ||| | ||| || || ||||||||| | | ||||| || |||||||| Sbjct: 903 gtcttcacagatagcaagctcctcgtggccatatggatagaggagaccaaagttggagta 844 Query: 435 cag 437 ||| Sbjct: 843 cag 841
>dbj|AP000420.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MZN14 Length = 82890 Score = 93.7 bits (47), Expect = 5e-16 Identities = 104/123 (84%) Strand = Plus / Plus Query: 112 acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 171 ||||| ||||| |||| |||| |||||||||||| ||||| ||||| || |||||||| Sbjct: 75724 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 75783 Query: 172 aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 231 | |||||| ||||||||||||| || |||||| ||||||||||| || || || |||||| Sbjct: 75784 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 75843 Query: 232 tgc 234 ||| Sbjct: 75844 tgc 75846 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 135 cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 194 |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| || Sbjct: 82881 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 82822 Query: 195 tagcctcatgtacgcaaagaaaacagcatagtggaactgc 234 | |||||| ||||||||||| || || || ||||||||| Sbjct: 82821 caacctcatatacgcaaagaataccgcgtaatggaactgc 82782
>gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH097M21, complete sequence Length = 131063 Score = 79.8 bits (40), Expect = 7e-12 Identities = 85/100 (85%) Strand = Plus / Plus Query: 135 cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 194 |||||| ||||| ||||| ||||| || |||||||||| |||||| ||||||||||| | Sbjct: 96226 cttctgattctgcgcaacacattccgatatccacatcaggttcctgatctcctgctccct 96285 Query: 195 tagcctcatgtacgcaaagaaaacagcatagtggaactgc 234 | ||||||||| |||||||| || || |||||||||||| Sbjct: 96286 caacctcatgtaagcaaagaacaccgcgtagtggaactgc 96325 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 331 tggtatggggggtacttctccattacaccacgcacct 367 ||||| || |||||||||||||| |||||||| |||| Sbjct: 96512 tggtaaggagggtacttctccatcacaccacgaacct 96548
>gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete sequence Length = 131563 Score = 75.8 bits (38), Expect = 1e-10 Identities = 95/114 (83%) Strand = Plus / Plus Query: 254 gcctctttacttcctcctcatagaaggccttgtccaacatctgactttccccatatgata 313 ||||||| ||||||||||||||||| |||||||| | |||||| || |||||||| |||| Sbjct: 129739 gcctcttgacttcctcctcatagaatgccttgtcaagcatctggctctccccatacgata 129798 Query: 314 tctttgcaaaaatagactggtatggggggtacttctccattacaccacgcacct 367 ||| ||||| ||||| || || || ||||| || ||||| ||| |||| |||| Sbjct: 129799 acttcgcaaagatagattgataaggagggtatttttccataacagcacgaacct 129852 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 178 cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 234 |||||||||||||| | || |||||| || || ||||||||||||||||| |||||| Sbjct: 129526 cttatctcctgctcccttaacctcatatatgcgaagaaaacagcatagtgaaactgc 129582
>gb|AC169177.4| Medicago truncatula chromosome 7 BAC clone mth2-1p4, complete sequence Length = 124443 Score = 75.8 bits (38), Expect = 1e-10 Identities = 95/114 (83%) Strand = Plus / Minus Query: 254 gcctctttacttcctcctcatagaaggccttgtccaacatctgactttccccatatgata 313 ||||||| ||||||||||||||||| |||||||| | |||||| || |||||||| |||| Sbjct: 115554 gcctcttgacttcctcctcatagaatgccttgtcaagcatctggctctccccatacgata 115495 Query: 314 tctttgcaaaaatagactggtatggggggtacttctccattacaccacgcacct 367 ||| ||||| ||||| || || || ||||| || ||||| ||| |||| |||| Sbjct: 115494 acttcgcaaagatagattgataaggagggtatttttccataacagcacgaacct 115441 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 254 gcctctttacttcctcctcatagaaggccttgtccaacatctgactttccccatatgata 313 ||||||| ||||||||||||||||| |||||||| | |||||| || |||||||| |||| Sbjct: 89919 gcctcttgacttcctcctcatagaatgccttgtcaagcatctggctctccccatacgata 89860 Query: 314 tctttgcaaaaataga 329 ||| ||||| ||||| Sbjct: 89859 acttcgcaaagataga 89844 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 178 cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 234 |||||||||||||| | || |||||| || |||||||||||||||||||| |||||| Sbjct: 90132 cttatctcctgctcccttaacctcatatatgcaaagaaaacagcatagtgaaactgc 90076 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 178 cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 234 |||||||||||||| | || |||||| || || ||||||||||||||||| |||||| Sbjct: 115767 cttatctcctgctcccttaacctcatatatgcgaagaaaacagcatagtgaaactgc 115711 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 181 atctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 234 ||||||||||| | || |||||| || || ||||||||||||||||| |||||| Sbjct: 50598 atctcctgctcccttaacctcatatatgcgaagaaaacagcatagtgaaactgc 50545 Score = 52.0 bits (26), Expect = 0.002 Identities = 92/114 (80%) Strand = Plus / Minus Query: 254 gcctctttacttcctcctcatagaaggccttgtccaacatctgactttccccatatgata 313 ||||||| || || ||||||||||| |||||||| | |||||| || || ||||| |||| Sbjct: 50388 gcctcttgacctcttcctcatagaatgccttgtcaagcatctggctctctccatacgata 50329 Query: 314 tctttgcaaaaatagactggtatggggggtacttctccattacaccacgcacct 367 ||| ||||| ||||| || || || ||||| || ||||| ||| |||| |||| Sbjct: 50328 acttcgcaaagatagattgataaggagggtatttttccatgacagcacgaacct 50275 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 379 tcacagacagccaactcttcatgaccatatgga 411 ||||||||||| | ||| ||||||||||||||| Sbjct: 107512 tcacagacagcaagctcctcatgaccatatgga 107480
>gb|AC157893.2| Medicago truncatula chromosome 7 BAC clone mth2-7m13, complete sequence Length = 140479 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 265 tcctcctcatagaaggccttgtccaacatctgactttccccatatgatatctttgcaaaa 324 |||||||| ||||| |||||||| | ||||||||| || |||||||||| ||| |||||| Sbjct: 64229 tcctcctcctagaatgccttgtcaagcatctgactctctccatatgataacttggcaaaa 64288 Query: 325 ataga 329 ||||| Sbjct: 64289 ataga 64293
>gb|AF186190.4| Homo sapiens chromosome 8 clone CTC-369M3 map 8q24.3 , complete sequence Length = 152405 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 tcacagacagccaactcttca 399 ||||||||||||||||||||| Sbjct: 111452 tcacagacagccaactcttca 111472
>dbj|D00313.1|YS2PEP1 Saccharomycopsis fibuligera PEP1 gene for putative secretable acid protease, complete cds Length = 2753 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 agaaggccttgtccaacatct 295 ||||||||||||||||||||| Sbjct: 1687 agaaggccttgtccaacatct 1667
>gb|AC132388.3| Mus musculus BAC clone RP23-443H3 from chromosome 3, complete sequence Length = 200490 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 acatctgactttccccatat 309 |||||||||||||||||||| Sbjct: 46333 acatctgactttccccatat 46352
>gb|AC124370.3| Mus musculus BAC clone RP24-554F1 from chromosome 3, complete sequence Length = 181208 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 acatctgactttccccatat 309 |||||||||||||||||||| Sbjct: 164976 acatctgactttccccatat 164995
>gb|AC183832.3| Pan troglodytes BAC clone CH251-260G12 from chromosome 7, complete sequence Length = 179012 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 atagaaggccttgtccaaca 292 |||||||||||||||||||| Sbjct: 26478 atagaaggccttgtccaaca 26497
>emb|AL359920.15| Human DNA sequence from clone RP11-359P14 on chromosome 13 Contains a novel gene and a TAR DNA binding protein (TARDBP) pseudogene, the 5' UTR of a novel gene (FLJ21007) and 2 CpG islands, complete sequence Length = 226860 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 aacagcatagtggaactgct 235 |||||||||||||||||||| Sbjct: 30727 aacagcatagtggaactgct 30746
>emb|AL844182.10| Mouse DNA sequence from clone RP23-399H17 on chromosome 4, complete sequence Length = 201590 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 acctggtcaacatcttcaca 383 |||||||||||||||||||| Sbjct: 97372 acctggtcaacatcttcaca 97353
>gb|AC091799.5| Homo sapiens BAC clone RP11-416N13 from 7, complete sequence Length = 48680 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 atagaaggccttgtccaaca 292 |||||||||||||||||||| Sbjct: 22696 atagaaggccttgtccaaca 22677
>gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete genome Length = 859006 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 gatatctttgcaaaaataga 329 |||||||||||||||||||| Sbjct: 171660 gatatctttgcaaaaataga 171679
>gb|AC011005.7|AC011005 Homo sapiens chromosome 7 clone RP11-286H14, complete sequence Length = 217615 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 ggccttgtccaacatctgac 298 |||||||||||||||||||| Sbjct: 116163 ggccttgtccaacatctgac 116144
>gb|AC083866.2|AC083866 Homo sapiens chromosome 7 clone RP11-702D16, complete sequence Length = 170528 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 ggccttgtccaacatctgac 298 |||||||||||||||||||| Sbjct: 40039 ggccttgtccaacatctgac 40020
>gb|AC069151.6| Homo sapiens BAC clone RP11-236I9 from 2, complete sequence Length = 37694 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 atagaaggccttgtccaaca 292 |||||||||||||||||||| Sbjct: 31698 atagaaggccttgtccaaca 31717
>dbj|AB024028.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K1G2 Length = 70952 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tttgtacagccatatgcaca 84 |||||||||||||||||||| Sbjct: 66000 tttgtacagccatatgcaca 66019
>emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chromosome 16, complete sequence Length = 229346 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 catggaccctgttcttctgg 141 |||||||||||||||||||| Sbjct: 91184 catggaccctgttcttctgg 91203 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,628,347 Number of Sequences: 3902068 Number of extensions: 3628347 Number of successful extensions: 59862 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59765 Number of HSP's gapped (non-prelim): 95 length of query: 447 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 425 effective length of database: 17,147,199,772 effective search space: 7287559903100 effective search space used: 7287559903100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)