| Clone Name | rbaal10d03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY808336.1| Schistosoma japonicum SJCHGC02128 protein mRNA, partial cds Length = 671 Score = 50.1 bits (25), Expect = 0.001 Identities = 35/37 (94%), Gaps = 1/37 (2%) Strand = Plus / Minus Query: 67 aatacagtttgtccatggnattgagtgaatacagttt 103 ||||||||||| |||||| |||||||||||||||||| Sbjct: 38 aatacagtttgcccatgg-attgagtgaatacagttt 3
>dbj|AB228030.1| Aspergillus oryzae cDNA, contig sequence: AoEST4903 Length = 351 Score = 50.1 bits (25), Expect = 0.001 Identities = 35/37 (94%), Gaps = 1/37 (2%) Strand = Plus / Minus Query: 67 aatacagtttgtccatggnattgagtgaatacagttt 103 ||||||||||| |||||| |||||||||||||||||| Sbjct: 64 aatacagtttgcccatgg-attgagtgaatacagttt 29
>gb|AY810440.1| Schistosoma japonicum clone SJCHGC09357 unknown mRNA Length = 1145 Score = 50.1 bits (25), Expect = 0.001 Identities = 35/37 (94%), Gaps = 1/37 (2%) Strand = Plus / Plus Query: 67 aatacagtttgtccatggnattgagtgaatacagttt 103 ||||||||||| |||||| |||||||||||||||||| Sbjct: 1056 aatacagtttgcccatgg-attgagtgaatacagttt 1091
>gb|AY813070.1| Schistosoma japonicum SJCHGC02109 protein mRNA, complete cds Length = 683 Score = 40.1 bits (20), Expect = 1.2 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 72 agtttgtccatggnattgagtgaatacagttt 103 |||||| |||||| |||||||||||||||||| Sbjct: 38 agtttgcccatgg-attgagtgaatacagttt 8
>gb|AC162892.7| Mus musculus chromosome 5, clone RP23-257D19, complete sequence Length = 155647 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 atcagttatctcaactctc 41 ||||||||||||||||||| Sbjct: 90370 atcagttatctcaactctc 90388
>gb|AF241733.2| Homo sapiens chromosome X clone RP1-123H2 map p11.4, complete sequence Length = 133159 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 aagtcacatcagttatctc 34 ||||||||||||||||||| Sbjct: 34324 aagtcacatcagttatctc 34342
>emb|AL121581.41|HS1022E24 Human DNA sequence from clone RP5-1022E24 on chromosome 20 Contains the 3' end of the OPRL1 gene for opiate receptor-like 1 protein, the GPR8 gene encoding a G protein-coupled receptor, the KIAA0835 gene encoding a protein similar to the myelin transcription factor 1 (MYT1), a novel gene, 7 CpG islands, ESTs, STSs and GSSs, complete sequence Length = 179888 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 acacaagtcacatcagtta 30 ||||||||||||||||||| Sbjct: 116244 acacaagtcacatcagtta 116226
>emb|AL031679.1|HS836E8 Human DNA sequence from clone RP5-836E8 on chromosome 20p12 Contains a FUSIP1 pseudogene (pFUSIP1) and a CpG island, complete sequence Length = 119296 Score = 38.2 bits (19), Expect = 4.6 Identities = 24/26 (92%) Strand = Plus / Plus Query: 64 tgaaatacagtttgtccatggnattg 89 |||||||||||||||||| || |||| Sbjct: 27333 tgaaatacagtttgtccagggcattg 27358
>gb|AC008629.7| Homo sapiens chromosome 5 clone CTB-161M19, complete sequence Length = 151881 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 acaagtgaaatacagtttg 77 ||||||||||||||||||| Sbjct: 3621 acaagtgaaatacagtttg 3603
>gb|AC010462.6| Homo sapiens chromosome 5 clone CTD-2276M2, complete sequence Length = 136506 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 acaagtgaaatacagtttg 77 ||||||||||||||||||| Sbjct: 15411 acaagtgaaatacagtttg 15429
>ref|NG_001017.1| Homo sapiens FUSIP1 pseudogene (pFUSIP1) on chromosome 20 Length = 722 Score = 38.2 bits (19), Expect = 4.6 Identities = 24/26 (92%) Strand = Plus / Plus Query: 64 tgaaatacagtttgtccatggnattg 89 |||||||||||||||||| || |||| Sbjct: 340 tgaaatacagtttgtccagggcattg 365
>gb|AC173996.2| Pan troglodytes chromosome X clone PTB-074P14 map human ortholog p11.4, complete sequence Length = 160565 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 aagtcacatcagttatctc 34 ||||||||||||||||||| Sbjct: 139880 aagtcacatcagttatctc 139898
>gb|AC012459.7| Homo sapiens BAC clone RP11-527G2 from 2, complete sequence Length = 175554 Score = 38.2 bits (19), Expect = 4.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 62 agtgaaatacagtttgtccatgg 84 |||||||||||||||||| |||| Sbjct: 52904 agtgaaatacagtttgtcaatgg 52926
>gb|AC154008.1| Mus musculus 6 BAC RP24-470H20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 139613 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tgaaatacagtttgtccat 82 ||||||||||||||||||| Sbjct: 17819 tgaaatacagtttgtccat 17837
>gb|AC154007.6| Mus musculus 6 BAC RP24-484F15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 169935 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 tgaaatacagtttgtccat 82 ||||||||||||||||||| Sbjct: 132515 tgaaatacagtttgtccat 132533
>gb|AC175364.1| Pan troglodytes chromosome X clone CH251-210F7 map human ortholog p11.4, complete sequence Length = 153433 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 aagtcacatcagttatctc 34 ||||||||||||||||||| Sbjct: 22916 aagtcacatcagttatctc 22934 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 586,816 Number of Sequences: 3902068 Number of extensions: 586816 Number of successful extensions: 36582 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 36559 Number of HSP's gapped (non-prelim): 24 length of query: 104 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 83 effective length of database: 17,151,101,840 effective search space: 1423541452720 effective search space used: 1423541452720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)