Clone Information

BLAST Search Result

Clone Name	rbaal10d01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC133860.5\| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genom...	186	6e-44
2	gb\|AC109601.9\| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genom...	186	6e-44
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	186	6e-44
4	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	186	6e-44
5	dbj\|AK105749.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	186	6e-44
6	gb\|AY106470.1\| Zea mays PCO136952 mRNA sequence	68	4e-08
7	ref\|XM_469861.1\| Oryza sativa (japonica cultivar-group), mRNA	64	6e-07
8	gb\|AC084282.6\| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom...	64	6e-07
9	dbj\|AK103255.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	64	6e-07
10	dbj\|AK101646.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	64	6e-07
11	emb\|AL669932.14\| Mouse DNA sequence from clone RP23-430P1 on chr...	46	0.15
12	gb\|AC092274.2\| Homo sapiens chromosome 5 clone CTC-537D8, comple...	42	2.3
13	emb\|Z75743.1\|HSLUCA9 Human DNA sequence from clone XXcos-9 on ch...	42	2.3
14	gb\|U50310.1\| Caenorhabditis elegans cosmid ZC487, complete sequence	40	9.3
15	gb\|AC137127.11\| Mus musculus chromosome 9, clone RP24-264F17, co...	40	9.3
16	gb\|AY790329.1\| Pseudomonas sp. KBOS 17 PHA synthase I (phaC1), P...	40	9.3
17	ref\|NM_196673.1\| Oryza sativa (japonica cultivar-group) putative...	40	9.3
18	ref\|XM_479385.1\| Oryza sativa (japonica cultivar-group), mRNA	40	9.3
19	gb\|AC118476.15\| Mus musculus chromosome 9, clone RP23-242K3, com...	40	9.3
20	gb\|AC138896.2\| Homo sapiens chromosome 16 clone RP11-455M1, comp...	40	9.3
21	gb\|AC145285.2\| Homo sapiens chromosome 16 clone RP11-1348G14, co...	40	9.3
22	gb\|AC138894.2\| Homo sapiens chromosome 16 clone RP11-435I10, com...	40	9.3
23	gb\|AC138824.2\| Homo sapiens chromosome 16 clone RP11-1119F12, co...	40	9.3
24	ref\|XM_800200.1\| Trypanosoma cruzi strain CL Brener 2-amino-3-ke...	40	9.3
25	gb\|AC002544.1\|HUAC002544 Homo sapiens Chromosome 16 BAC clone CI...	40	9.3
26	gb\|AC124658.5\| Homo sapiens chromosome 11, clone RP11-655D12, co...	40	9.3
27	gb\|AC026454.5\| Homo sapiens chromosome 16 clone CTD-2597E15, com...	40	9.3
28	gb\|AF423758.1\| HIV-1 isolate X475 from Spain, complete genome	40	9.3
29	emb\|AJ400877.1\|HSA400877 Homo sapiens ASCL3 gene, CEGP1 gene, C1...	40	9.3
30	gb\|AC127453.2\| Homo sapiens chromosome 16 clone CTA-115H5, compl...	40	9.3
31	gb\|AC026894.7\| Homo sapiens chromosome , clone RP11-318C2, compl...	40	9.3
32	gb\|AE005803.1\| Caulobacter crescentus CB15 section 129 of 359 of...	40	9.3
33	gb\|AC087550.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.3
34	gb\|AC026396.8\| Homo sapiens chromosome 10 clone RP11-89K18, comp...	40	9.3
35	gb\|U91326.1\|HUU91326 Homo sapiens chromosome 16 BAC clone CIT987...	40	9.3
36	gb\|AC024474.8\| Homo sapiens chromosome 15, clone RP11-686I6, com...	40	9.3
37	gb\|AC091996.3\| Homo sapiens chromosome 5 clone RP11-96G10, compl...	40	9.3
38	ref\|NM_022441.1\| Rattus norvegicus activin A receptor type II-li...	40	9.3
39	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
40	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
41	gb\|AC138934.3\| Homo sapiens chromosome 16 clone RP11-685O4, comp...	40	9.3
42	gb\|AC087547.2\|AC087547 Oryza sativa (japonica cultivar-group) ch...	40	9.3
43	dbj\|AB220636.1\| Uncultured bacterium phaC gene for PHA synthase,...	40	9.3
44	dbj\|AB220618.1\| Uncultured bacterium phaC gene for PHA synthase,...	40	9.3
45	gb\|AC135783.2\| Homo sapiens chromosome 16 clone CTD-2555L18, com...	40	9.3
46	gb\|AC116346.2\| Homo sapiens chromosome 16 clone RP11-24N18, comp...	40	9.3
47	gb\|AC133912.3\| Homo sapiens chromosome 16 clone CTC-506N3, compl...	40	9.3
48	dbj\|AP005182.5\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
49	dbj\|AK073258.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.3
50	dbj\|AK062774.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.3
51	gb\|AE000513.1\| Deinococcus radiodurans R1 chromosome 1, complete...	40	9.3
52	gb\|L36088.1\|RATSTKR Rattus norvegicus (clone RSTK-1) serine-thre...	40	9.3
53	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.3
54	gb\|AC127522.7\| Homo sapiens chromosome 15, clone RP13-126C7, com...	40	9.3

>gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genomic sequence, complete
              sequence
          Length = 157397

 Score =  186 bits (94), Expect = 6e-44
 Identities = 223/262 (85%), Gaps = 8/262 (3%)
 Strand = Plus / Plus

                                                                          
Query: 404    atcatgtccaagttaacgctatcggactcgccacggtgtgcttaccgtccgaccacacca 463
              |||||||||| || || || ||||| ||||||||| ||||||| ||||||||||| || |
Sbjct: 154934 atcatgtccacgtaaatgccatcgggctcgccacgctgtgcttgccgtccgaccagacga 154993

                                                                          
Query: 464    gccggccgaacccggcggtgcccgacggctgcgacttggccgccgtgaagctcaccgtgt 523
              | |||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 154994 ggcggccgaatccggcggtgcccgacggctgcgactt---cgccgtgaagctcaccgtgt 155050

                                                                          
Query: 524    agctcttcttctcgccgatcgccgtgaactccagctccgtcggcttcacgtcgacggtca 583
              |||||||||||||||||  || ||||||| ||||||| ||||||| |||| | |||| ||
Sbjct: 155051 agctcttcttctcgccggccgacgtgaacgccagctcggtcggctccacggccacggcca 155110

                                                                          
Query: 584    ccccggacatggacaccgaggcgtccacctttgtacgtgcccgccgcgcccacgttggtg 643
              | || | |||||   | |  |||  ||||| ||||||| ||||||||||| |||||||||
Sbjct: 155111 cgccaggcatgg---cggccgcgctcacct-tgtacgtccccgccgcgccgacgttggtg 155166

                                    
Query: 644    nagcgtgcgcgtgtgcgtcacc 665
               ||||||||| |||||||||||
Sbjct: 155167 -agcgtgcgcctgtgcgtcacc 155187

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>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete
              sequence
          Length = 145590

 Score =  186 bits (94), Expect = 6e-44
 Identities = 223/262 (85%), Gaps = 8/262 (3%)
 Strand = Plus / Minus

                                                                          
Query: 404    atcatgtccaagttaacgctatcggactcgccacggtgtgcttaccgtccgaccacacca 463
              |||||||||| || || || ||||| ||||||||| ||||||| ||||||||||| || |
Sbjct: 108459 atcatgtccacgtaaatgccatcgggctcgccacgctgtgcttgccgtccgaccagacga 108400

                                                                          
Query: 464    gccggccgaacccggcggtgcccgacggctgcgacttggccgccgtgaagctcaccgtgt 523
              | |||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 108399 ggcggccgaatccggcggtgcccgacggctgcgactt---cgccgtgaagctcaccgtgt 108343

                                                                          
Query: 524    agctcttcttctcgccgatcgccgtgaactccagctccgtcggcttcacgtcgacggtca 583
              |||||||||||||||||  || ||||||| ||||||| ||||||| |||| | |||| ||
Sbjct: 108342 agctcttcttctcgccggccgacgtgaacgccagctcggtcggctccacggccacggcca 108283

                                                                          
Query: 584    ccccggacatggacaccgaggcgtccacctttgtacgtgcccgccgcgcccacgttggtg 643
              | || | |||||   | |  |||  ||||| ||||||| ||||||||||| |||||||||
Sbjct: 108282 cgccaggcatgg---cggccgcgctcacct-tgtacgtccccgccgcgccgacgttggtg 108227

                                    
Query: 644    nagcgtgcgcgtgtgcgtcacc 665
               ||||||||| |||||||||||
Sbjct: 108226 -agcgtgcgcctgtgcgtcacc 108206

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  186 bits (94), Expect = 6e-44
 Identities = 223/262 (85%), Gaps = 8/262 (3%)
 Strand = Plus / Minus

                                                                            
Query: 404      atcatgtccaagttaacgctatcggactcgccacggtgtgcttaccgtccgaccacacca 463
                |||||||||| || || || ||||| ||||||||| ||||||| ||||||||||| || |
Sbjct: 22513212 atcatgtccacgtaaatgccatcgggctcgccacgctgtgcttgccgtccgaccagacga 22513153

                                                                            
Query: 464      gccggccgaacccggcggtgcccgacggctgcgacttggccgccgtgaagctcaccgtgt 523
                | |||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 22513152 ggcggccgaatccggcggtgcccgacggctgcgactt---cgccgtgaagctcaccgtgt 22513096

                                                                            
Query: 524      agctcttcttctcgccgatcgccgtgaactccagctccgtcggcttcacgtcgacggtca 583
                |||||||||||||||||  || ||||||| ||||||| ||||||| |||| | |||| ||
Sbjct: 22513095 agctcttcttctcgccggccgacgtgaacgccagctcggtcggctccacggccacggcca 22513036

                                                                            
Query: 584      ccccggacatggacaccgaggcgtccacctttgtacgtgcccgccgcgcccacgttggtg 643
                | || | |||||   | |  |||  ||||| ||||||| ||||||||||| |||||||||
Sbjct: 22513035 cgccaggcatgg---cggccgcgctcacct-tgtacgtccccgccgcgccgacgttggtg 22512980

                                      
Query: 644      nagcgtgcgcgtgtgcgtcacc 665
                 ||||||||| |||||||||||
Sbjct: 22512979 -agcgtgcgcctgtgcgtcacc 22512959



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                        
Query: 501      ggccgccgtgaagctcaccgtgtagctcttcttctcgccg 540
                |||||||| |||||||||||||||||||| ||||||||||
Sbjct: 31184469 ggccgccgcgaagctcaccgtgtagctctgcttctcgccg 31184508

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  186 bits (94), Expect = 6e-44
 Identities = 223/262 (85%), Gaps = 8/262 (3%)
 Strand = Plus / Minus

                                                                            
Query: 404      atcatgtccaagttaacgctatcggactcgccacggtgtgcttaccgtccgaccacacca 463
                |||||||||| || || || ||||| ||||||||| ||||||| ||||||||||| || |
Sbjct: 22506241 atcatgtccacgtaaatgccatcgggctcgccacgctgtgcttgccgtccgaccagacga 22506182

                                                                            
Query: 464      gccggccgaacccggcggtgcccgacggctgcgacttggccgccgtgaagctcaccgtgt 523
                | |||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 22506181 ggcggccgaatccggcggtgcccgacggctgcgactt---cgccgtgaagctcaccgtgt 22506125

                                                                            
Query: 524      agctcttcttctcgccgatcgccgtgaactccagctccgtcggcttcacgtcgacggtca 583
                |||||||||||||||||  || ||||||| ||||||| ||||||| |||| | |||| ||
Sbjct: 22506124 agctcttcttctcgccggccgacgtgaacgccagctcggtcggctccacggccacggcca 22506065

                                                                            
Query: 584      ccccggacatggacaccgaggcgtccacctttgtacgtgcccgccgcgcccacgttggtg 643
                | || | |||||   | |  |||  ||||| ||||||| ||||||||||| |||||||||
Sbjct: 22506064 cgccaggcatgg---cggccgcgctcacct-tgtacgtccccgccgcgccgacgttggtg 22506009

                                      
Query: 644      nagcgtgcgcgtgtgcgtcacc 665
                 ||||||||| |||||||||||
Sbjct: 22506008 -agcgtgcgcctgtgcgtcacc 22505988



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                        
Query: 501      ggccgccgtgaagctcaccgtgtagctcttcttctcgccg 540
                |||||||| |||||||||||||||||||| ||||||||||
Sbjct: 31274992 ggccgccgcgaagctcaccgtgtagctctgcttctcgccg 31275031

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>dbj|AK105749.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B09, full
            insert sequence
          Length = 2517

 Score =  186 bits (94), Expect = 6e-44
 Identities = 223/262 (85%), Gaps = 8/262 (3%)
 Strand = Plus / Minus

                                                                        
Query: 404  atcatgtccaagttaacgctatcggactcgccacggtgtgcttaccgtccgaccacacca 463
            |||||||||| || || || ||||| ||||||||| ||||||| ||||||||||| || |
Sbjct: 2345 atcatgtccacgtaaatgccatcgggctcgccacgctgtgcttgccgtccgaccagacga 2286

                                                                        
Query: 464  gccggccgaacccggcggtgcccgacggctgcgacttggccgccgtgaagctcaccgtgt 523
            | |||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 2285 ggcggccgaatccggcggtgcccgacggctgcgactt---cgccgtgaagctcaccgtgt 2229

                                                                        
Query: 524  agctcttcttctcgccgatcgccgtgaactccagctccgtcggcttcacgtcgacggtca 583
            |||||||||||||||||  || ||||||| ||||||| ||||||| |||| | |||| ||
Sbjct: 2228 agctcttcttctcgccggccgacgtgaacgccagctcggtcggctccacggccacggcca 2169

                                                                        
Query: 584  ccccggacatggacaccgaggcgtccacctttgtacgtgcccgccgcgcccacgttggtg 643
            | || | |||||   | |  |||  ||||| ||||||| ||||||||||| |||||||||
Sbjct: 2168 cgccaggcatgg---cggccgcgctcacct-tgtacgtccccgccgcgccgacgttggtg 2113

                                  
Query: 644  nagcgtgcgcgtgtgcgtcacc 665
             ||||||||| |||||||||||
Sbjct: 2112 -agcgtgcgcctgtgcgtcacc 2092

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>gb|AY106470.1| Zea mays PCO136952 mRNA sequence
          Length = 741

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                 
Query: 503 ccgccgtgaagctcaccgtgtagctcttcttctcgccg 540
           ||||||||||||||||||||||||||| ||||||||||
Sbjct: 378 ccgccgtgaagctcaccgtgtagctctgcttctcgccg 341

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>ref|XM_469861.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2568

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 501  ggccgccgtgaagctcaccgtgtagctcttcttctcgccg 540
            |||||||| |||||||||||||||||||| ||||||||||
Sbjct: 2202 ggccgccgcgaagctcaccgtgtagctctgcttctcgccg 2163

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>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
              sequence
          Length = 128017

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                      
Query: 501    ggccgccgtgaagctcaccgtgtagctcttcttctcgccg 540
              |||||||| |||||||||||||||||||| ||||||||||
Sbjct: 105110 ggccgccgcgaagctcaccgtgtagctctgcttctcgccg 105149

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>dbj|AK103255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123P12, full
            insert sequence
          Length = 2813

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 501  ggccgccgtgaagctcaccgtgtagctcttcttctcgccg 540
            |||||||| |||||||||||||||||||| ||||||||||
Sbjct: 2450 ggccgccgcgaagctcaccgtgtagctctgcttctcgccg 2411

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>dbj|AK101646.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055P14, full
            insert sequence
          Length = 2667

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 501  ggccgccgtgaagctcaccgtgtagctcttcttctcgccg 540
            |||||||| |||||||||||||||||||| ||||||||||
Sbjct: 2255 ggccgccgcgaagctcaccgtgtagctctgcttctcgccg 2216

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>emb|AL669932.14| Mouse DNA sequence from clone RP23-430P1 on chromosome 2, complete
             sequence
          Length = 148257

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 309   tccccccaattttacacactgaa 331
             |||||||||||||||||||||||
Sbjct: 33068 tccccccaattttacacactgaa 33046

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>gb|AC092274.2| Homo sapiens chromosome 5 clone CTC-537D8, complete sequence
          Length = 148579

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 218   aaatcacaatctaaaagttat 238
             |||||||||||||||||||||
Sbjct: 38484 aaatcacaatctaaaagttat 38464

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>emb|Z75743.1|HSLUCA9 Human DNA sequence from clone XXcos-9 on chromosome 3, complete
            sequence
          Length = 24055

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 456  ccacaccagccggccgaacccggcg 480
            |||||||||||||||| ||||||||
Sbjct: 3289 ccacaccagccggccgcacccggcg 3313

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>gb|U50310.1| Caenorhabditis elegans cosmid ZC487, complete sequence
          Length = 23688

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 227  tctaaaagttatgattgggccttattga 254
            ||||||| |||||||||||| |||||||
Sbjct: 2539 tctaaaatttatgattgggcattattga 2566

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>gb|AC137127.11| Mus musculus chromosome 9, clone RP24-264F17, complete sequence
          Length = 181842

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 174   atacccatcacccaatccctttcc 197
             ||||||||| ||||||||||||||
Sbjct: 14787 atacccatcccccaatccctttcc 14764

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>gb|AY790329.1| Pseudomonas sp. KBOS 17 PHA synthase I (phaC1), PHA depolymerase
            (phaZ), and PHA synthase II (phaC2) genes, complete cds
          Length = 4621

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 528  cttcttctcgccgatcgccg 547
            ||||||||||||||||||||
Sbjct: 1064 cttcttctcgccgatcgccg 1045

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>ref|NM_196673.1| Oryza sativa (japonica cultivar-group) putative soluble starch
            synthase II-1 (OSJNBb0016G17.2), mRNA
          Length = 3219

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 479  cggtgcccgacggctgcgac 498
            ||||||||||||||||||||
Sbjct: 2951 cggtgcccgacggctgcgac 2970

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>ref|XM_479385.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1768

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 203 caccatttctcccccaaatc 222
           ||||||||||||||||||||
Sbjct: 54  caccatttctcccccaaatc 73

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>gb|AC118476.15| Mus musculus chromosome 9, clone RP23-242K3, complete sequence
          Length = 197683

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 174   atacccatcacccaatccctttcc 197
             ||||||||| ||||||||||||||
Sbjct: 37138 atacccatcccccaatccctttcc 37161

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>gb|AC138896.2| Homo sapiens chromosome 16 clone RP11-455M1, complete sequence
          Length = 158271

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 190   ccctttccatcatcaccatttctc 213
             ||||||||||||||| ||||||||
Sbjct: 91034 ccctttccatcatcagcatttctc 91057

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>gb|AC145285.2| Homo sapiens chromosome 16 clone RP11-1348G14, complete sequence
          Length = 219165

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 190    ccctttccatcatcaccatttctc 213
              ||||||||||||||| ||||||||
Sbjct: 112481 ccctttccatcatcagcatttctc 112504

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>gb|AC138894.2| Homo sapiens chromosome 16 clone RP11-435I10, complete sequence
          Length = 182289

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 190    ccctttccatcatcaccatttctc 213
              ||||||||||||||| ||||||||
Sbjct: 135383 ccctttccatcatcagcatttctc 135406

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>gb|AC138824.2| Homo sapiens chromosome 16 clone RP11-1119F12, complete sequence
          Length = 134444

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 190   ccctttccatcatcaccatttctc 213
             ||||||||||||||| ||||||||
Sbjct: 87061 ccctttccatcatcagcatttctc 87084

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>ref|XM_800200.1| Trypanosoma cruzi strain CL Brener 2-amino-3-ketobutyrate coenzyme
           A ligase (Tc00.1047053511899.40) partial mRNA
          Length = 1215

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 609 cacctttgtacgtgcccgcc 628
           ||||||||||||||||||||
Sbjct: 97  cacctttgtacgtgcccgcc 78

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>gb|AC002544.1|HUAC002544 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-761H5, complete
             sequence
          Length = 156641

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 190   ccctttccatcatcaccatttctc 213
             ||||||||||||||| ||||||||
Sbjct: 47502 ccctttccatcatcagcatttctc 47479

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>gb|AC124658.5| Homo sapiens chromosome 11, clone RP11-655D12, complete sequence
          Length = 163126

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   atttgagagataccaccaaa 285
             ||||||||||||||||||||
Sbjct: 60366 atttgagagataccaccaaa 60385

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>gb|AC026454.5| Homo sapiens chromosome 16 clone CTD-2597E15, complete sequence
          Length = 136331

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 190    ccctttccatcatcaccatttctc 213
              ||||||||||||||| ||||||||
Sbjct: 109406 ccctttccatcatcagcatttctc 109383

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>gb|AF423758.1| HIV-1 isolate X475 from Spain, complete genome
          Length = 8945

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 347  cagcagcggtgtcagcagtt 366
            ||||||||||||||||||||
Sbjct: 8857 cagcagcggtgtcagcagtt 8838

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>emb|AJ400877.1|HSA400877 Homo sapiens ASCL3 gene, CEGP1 gene, C11orf14 gene, C11orf15 gene,
              C11orf16 gene and C11orf17 gene
          Length = 256164

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 266    atttgagagataccaccaaa 285
              ||||||||||||||||||||
Sbjct: 210687 atttgagagataccaccaaa 210668

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>gb|AC127453.2| Homo sapiens chromosome 16 clone CTA-115H5, complete sequence
          Length = 63736

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 190   ccctttccatcatcaccatttctc 213
             ||||||||||||||| ||||||||
Sbjct: 21729 ccctttccatcatcagcatttctc 21706

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>gb|AC026894.7| Homo sapiens chromosome , clone RP11-318C2, complete sequence
          Length = 224761

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   atttgagagataccaccaaa 285
             ||||||||||||||||||||
Sbjct: 88817 atttgagagataccaccaaa 88798

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>gb|AE005803.1| Caulobacter crescentus CB15 section 129 of 359 of the complete genome
          Length = 10483

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 581  tcaccccggacatggacaccgagg 604
            |||||||||||||| |||||||||
Sbjct: 1100 tcaccccggacatgaacaccgagg 1123

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>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17,
             complete sequence
          Length = 141041

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 479   cggtgcccgacggctgcgac 498
             ||||||||||||||||||||
Sbjct: 22605 cggtgcccgacggctgcgac 22624

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>gb|AC026396.8| Homo sapiens chromosome 10 clone RP11-89K18, complete sequence
          Length = 162057

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   ttcctcccctgaatcccccc 315
             ||||||||||||||||||||
Sbjct: 82926 ttcctcccctgaatcccccc 82945

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>gb|U91326.1|HUU91326 Homo sapiens chromosome 16 BAC clone CIT987SK-A-234F9, complete
             sequence
          Length = 150296

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 190   ccctttccatcatcaccatttctc 213
             ||||||||||||||| ||||||||
Sbjct: 95477 ccctttccatcatcagcatttctc 95454

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>gb|AC024474.8| Homo sapiens chromosome 15, clone RP11-686I6, complete sequence
          Length = 194973

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   cctttccatcatcaccattt 210
             ||||||||||||||||||||
Sbjct: 73903 cctttccatcatcaccattt 73922

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>gb|AC091996.3| Homo sapiens chromosome 5 clone RP11-96G10, complete sequence
          Length = 182797

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   actttgagatatttgagaga 275
             ||||||||||||||||||||
Sbjct: 36139 actttgagatatttgagaga 36120

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>ref|NM_022441.1| Rattus norvegicus activin A receptor type II-like 1 (Acvrl1), mRNA
          Length = 3917

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 114 caactcaggacccaatccaactac 137
           ||||||||||||||| ||||||||
Sbjct: 203 caactcaggacccaaaccaactac 180

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 479      cggtgcccgacggctgcgac 498
                ||||||||||||||||||||
Sbjct: 15168906 cggtgcccgacggctgcgac 15168925

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 203      caccatttctcccccaaatc 222
                ||||||||||||||||||||
Sbjct: 27491748 caccatttctcccccaaatc 27491767

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>gb|AC138934.3| Homo sapiens chromosome 16 clone RP11-685O4, complete sequence
          Length = 169127

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 190   ccctttccatcatcaccatttctc 213
             ||||||||||||||| ||||||||
Sbjct: 35792 ccctttccatcatcagcatttctc 35769

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>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11,
             complete sequence
          Length = 129420

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 479   cggtgcccgacggctgcgac 498
             ||||||||||||||||||||
Sbjct: 77519 cggtgcccgacggctgcgac 77538

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>dbj|AB220636.1| Uncultured bacterium phaC gene for PHA synthase, partial cds,
           clone:N-33
          Length = 479

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 528 cttcttctcgccgatcgccg 547
           ||||||||||||||||||||
Sbjct: 276 cttcttctcgccgatcgccg 257

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>dbj|AB220618.1| Uncultured bacterium phaC gene for PHA synthase, partial cds,
           clone:N-14
          Length = 479

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 528 cttcttctcgccgatcgccg 547
           ||||||||||||||||||||
Sbjct: 276 cttcttctcgccgatcgccg 257

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>gb|AC135783.2| Homo sapiens chromosome 16 clone CTD-2555L18, complete sequence
          Length = 224150

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 190    ccctttccatcatcaccatttctc 213
              ||||||||||||||| ||||||||
Sbjct: 160546 ccctttccatcatcagcatttctc 160523

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>gb|AC116346.2| Homo sapiens chromosome 16 clone RP11-24N18, complete sequence
          Length = 160521

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 190   ccctttccatcatcaccatttctc 213
             ||||||||||||||| ||||||||
Sbjct: 48583 ccctttccatcatcagcatttctc 48606

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>gb|AC133912.3| Homo sapiens chromosome 16 clone CTC-506N3, complete sequence
          Length = 128703

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 190    ccctttccatcatcaccatttctc 213
              ||||||||||||||| ||||||||
Sbjct: 110596 ccctttccatcatcagcatttctc 110619

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>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0018C07
          Length = 141707

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   caccatttctcccccaaatc 222
             ||||||||||||||||||||
Sbjct: 55719 caccatttctcccccaaatc 55738

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>dbj|AK073258.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024L05, full
           insert sequence
          Length = 1768

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 203 caccatttctcccccaaatc 222
           ||||||||||||||||||||
Sbjct: 54  caccatttctcccccaaatc 73

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>dbj|AK062774.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A06, full
           insert sequence
          Length = 849

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 479 cggtgcccgacggctgcgac 498
           ||||||||||||||||||||
Sbjct: 329 cggtgcccgacggctgcgac 348

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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 471     gaacccggcggtgcccgacg 490
               ||||||||||||||||||||
Sbjct: 2520978 gaacccggcggtgcccgacg 2520997

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>gb|L36088.1|RATSTKR Rattus norvegicus (clone RSTK-1) serine-threonine kinase receptor
           type I mRNA, complete cds
          Length = 3917

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 114 caactcaggacccaatccaactac 137
           ||||||||||||||| ||||||||
Sbjct: 203 caactcaggacccaaaccaactac 180

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 479      cggtgcccgacggctgcgac 498
                ||||||||||||||||||||
Sbjct: 15177147 cggtgcccgacggctgcgac 15177166

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>gb|AC127522.7| Homo sapiens chromosome 15, clone RP13-126C7, complete sequence
          Length = 166914

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   cctttccatcatcaccattt 210
             ||||||||||||||||||||
Sbjct: 24034 cctttccatcatcaccattt 24053


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,426,856
Number of Sequences: 3902068
Number of extensions: 4426856
Number of successful extensions: 86171
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85757
Number of HSP's gapped (non-prelim): 404
length of query: 677
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 654
effective length of database: 17,143,297,704
effective search space: 11211716698416
effective search space used: 11211716698416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result