| Clone Name | rbaal10c21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479079.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2300 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 276 tgctctccaagcattcaagtccaagaatgattgcaggtgatctccagtcaga 327 |||||||||||||||||||||| |||||||||| |||| ||||||| |||| Sbjct: 510 tgctctccaagcattcaagtcccagaatgattgatggtgctctccagccaga 459 Score = 40.1 bits (20), Expect = 9.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 373 ctgtgattcttcaccatggcatgttccatcat 404 ||||||||||||||||| || || |||||||| Sbjct: 416 ctgtgattcttcaccatagcttgatccatcat 385
>dbj|AK101099.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025A03, full insert sequence Length = 2306 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 276 tgctctccaagcattcaagtccaagaatgattgcaggtgatctccagtcaga 327 |||||||||||||||||||||| |||||||||| |||| ||||||| |||| Sbjct: 516 tgctctccaagcattcaagtcccagaatgattgatggtgctctccagccaga 465 Score = 40.1 bits (20), Expect = 9.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 373 ctgtgattcttcaccatggcatgttccatcat 404 ||||||||||||||||| || || |||||||| Sbjct: 422 ctgtgattcttcaccatagcttgatccatcat 391
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 373 ctgtgattcttcaccatggcatgttccatcatcctgatagaaggcca 419 ||||||||||||||||| || || |||||||| |||| ||||||||| Sbjct: 24667622 ctgtgattcttcaccatagcttgatccatcattctgacagaaggcca 24667576 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 276 tgctctccaagcattcaagtcc 297 |||||||||||||||||||||| Sbjct: 24667888 tgctctccaagcattcaagtcc 24667867
>dbj|AP005809.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0039M16 Length = 133229 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 373 ctgtgattcttcaccatggcatgttccatcatcctgatagaaggcca 419 ||||||||||||||||| || || |||||||| |||| ||||||||| Sbjct: 123689 ctgtgattcttcaccatagcttgatccatcattctgacagaaggcca 123643 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 276 tgctctccaagcattcaagtcc 297 |||||||||||||||||||||| Sbjct: 123955 tgctctccaagcattcaagtcc 123934
>dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0040H10 Length = 132919 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 373 ctgtgattcttcaccatggcatgttccatcatcctgatagaaggcca 419 ||||||||||||||||| || || |||||||| |||| ||||||||| Sbjct: 23559 ctgtgattcttcaccatagcttgatccatcattctgacagaaggcca 23513 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 276 tgctctccaagcattcaagtcc 297 |||||||||||||||||||||| Sbjct: 23825 tgctctccaagcattcaagtcc 23804
>gb|AC083817.19|AC083817 Mus musculus 1 BAC RP23-470G12 (Roswell Park Cancer Institute Mouse BAC) complete sequence Length = 204950 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 641 ctgaaatctcaacaaattagtataag 666 |||||| ||||||||||||||||||| Sbjct: 65813 ctgaaaactcaacaaattagtataag 65788
>gb|AC087040.6|AC087040 Mus musculus 1 BAC RP23-269M3 (RPCI Mouse BAC) complete sequence Length = 142488 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 641 ctgaaatctcaacaaattagtataag 666 |||||| ||||||||||||||||||| Sbjct: 19890 ctgaaaactcaacaaattagtataag 19915
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 630 attatgaaatcctgaaatctc 650 ||||||||||||||||||||| Sbjct: 33331334 attatgaaatcctgaaatctc 33331354
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete sequence Length = 122815 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 630 attatgaaatcctgaaatctc 650 ||||||||||||||||||||| Sbjct: 87850 attatgaaatcctgaaatctc 87870
>gb|AC123796.2| Mus musculus BAC clone RP24-320P9 from chromosome 8, complete sequence Length = 156593 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 451 aaatcaaagacagcttagtagataa 475 |||||||||||||||||| |||||| Sbjct: 57747 aaatcaaagacagcttagaagataa 57723
>gb|AC116731.9| Mus musculus chromosome 8, clone RP23-346D17, complete sequence Length = 230139 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 451 aaatcaaagacagcttagtagataa 475 |||||||||||||||||| |||||| Sbjct: 164385 aaatcaaagacagcttagaagataa 164361
>emb|BX908733.14| Zebrafish DNA sequence from clone CH211-190N7 in linkage group 22, complete sequence Length = 153031 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 518 acccattacttataaggaaataaac 542 |||||||||||| |||||||||||| Sbjct: 88095 acccattacttaaaaggaaataaac 88071
>gb|AC129416.1| Homo sapiens 12 BAC RP11-464G3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 139995 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 agagactgtgattcttcacca 388 ||||||||||||||||||||| Sbjct: 24720 agagactgtgattcttcacca 24700
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 630 attatgaaatcctgaaatctc 650 ||||||||||||||||||||| Sbjct: 33421844 attatgaaatcctgaaatctc 33421864
>gb|AC148599.2| Xenopus tropicalis clone CH216-2G20, complete sequence Length = 206059 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 gtggcatggtgtgctctccaa 285 ||||||||||||||||||||| Sbjct: 177795 gtggcatggtgtgctctccaa 177775
>emb|BX649373.4| Zebrafish DNA sequence from clone CH211-270E10 in linkage group 22, complete sequence Length = 49940 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 518 acccattacttataaggaaataaac 542 |||||||||||| |||||||||||| Sbjct: 11582 acccattacttaaaaggaaataaac 11558
>gb|AC007447.6|AC007447 Homo sapiens, clone hRPK.76_A_1, complete sequence Length = 155210 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 agagactgtgattcttcacca 388 ||||||||||||||||||||| Sbjct: 84328 agagactgtgattcttcacca 84308
>emb|AL732530.6| Mouse DNA sequence from clone RP23-102I12 on chromosome 4, complete sequence Length = 211998 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 644 aaatctcaacaaattagtataagca 668 |||||||||||||||| |||||||| Sbjct: 159258 aaatctcaacaaattaatataagca 159234
>ref|XM_550449.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2472 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 accatggcatgttccatcat 404 |||||||||||||||||||| Sbjct: 2036 accatggcatgttccatcat 2017
>gb|AC150278.1| Pan troglodytes BAC clone CH251-126G17 from Y, complete sequence Length = 171976 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ttcctcacttaacgtggcat 271 |||||||||||||||||||| Sbjct: 47954 ttcctcacttaacgtggcat 47973
>gb|AC120843.11| Mus musculus chromosome 12, clone RP23-71C5, complete sequence Length = 220627 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 640 cctgaaatctcaacaaatta 659 |||||||||||||||||||| Sbjct: 60936 cctgaaatctcaacaaatta 60917
>gb|AC093716.3| Homo sapiens BAC clone RP11-702L4 from 7, complete sequence Length = 77028 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 ttttattagtataggtaata 73 |||||||||||||||||||| Sbjct: 55071 ttttattagtataggtaata 55090
>gb|AC137702.18| Medicago truncatula clone mth2-7k10, complete sequence Length = 94750 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 583 tttgatcaatcatatacctg 602 |||||||||||||||||||| Sbjct: 20033 tttgatcaatcatatacctg 20052
>emb|AL445675.9| Human DNA sequence from clone RP11-498M14 on chromosome 1 Contains a CpG island, complete sequence Length = 171985 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ttcctcacttaacgtggcat 271 |||||||||||||||||||| Sbjct: 28261 ttcctcacttaacgtggcat 28280
>emb|AL353597.20| Human DNA sequence from clone RP1-153P14 on chromosome 6 Contains the gene for a novel protein (containing KIAA0082, FLJ22156 and FLJ20341), three novel genes, the gene for a novel protein and three CpG islands, complete sequence Length = 162451 Score = 40.1 bits (20), Expect = 9.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 628 tgattatgaaatcctgaaatctcaacaaatta 659 ||||||||||| |||||||||| ||| ||||| Sbjct: 20822 tgattatgaaaccctgaaatcttaacgaatta 20791
>emb|AL160054.14| Human DNA sequence from clone RP11-8C21 on chromosome 9 Contains the 5' end of a novel gene (SHC3), a novel gene (HFSE-1), the CSK2 gene for CDC28 protein kinase regulatory subunit 2 (CKSHS2), the 5' end of the gene for SECIS binding protein 2 (SBP2) and three CpG islands, complete sequence Length = 206200 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 catggtgtgctctccaagca 288 |||||||||||||||||||| Sbjct: 154768 catggtgtgctctccaagca 154749
>emb|AL137245.11| Human DNA sequence from clone RP11-196I2 on chromosome 13 Contains a novel gene, complete sequence Length = 146994 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 aataatttgatcaatcatat 597 |||||||||||||||||||| Sbjct: 130429 aataatttgatcaatcatat 130410
>emb|AL121898.23|HSA430K20 Human DNA sequence from clone RP11-430K20 on chromosome 20 Contains the 5' end of the PLCB4 gene for phospholipase C beta 4 and a CpG island, complete sequence Length = 210359 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 attacttataaggaaataaa 541 |||||||||||||||||||| Sbjct: 155287 attacttataaggaaataaa 155306
>emb|AJ512819.1|TAE512819 Triticum aestivum stB1.1b gene for sulphate transporter, exons 1-14, genome B Length = 3880 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 635 gaaatcctgaaatctcaaca 654 |||||||||||||||||||| Sbjct: 1063 gaaatcctgaaatctcaaca 1044
>emb|CR931734.2| Medicago truncatula chromosome 5 clone mth2-62m24, COMPLETE SEQUENCE Length = 88409 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 629 gattatgaaatcctgaaatctcaa 652 ||||||||||||| |||||||||| Sbjct: 76789 gattatgaaatccggaaatctcaa 76766
>emb|AL805946.5| Mouse DNA sequence from clone RP23-127B1 on chromosome 4 Contains the 3' end of a novel gene, complete sequence Length = 133178 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 agcccaacaatctgaactct 503 |||||||||||||||||||| Sbjct: 60086 agcccaacaatctgaactct 60105
>dbj|BS000654.1| Pan troglodytes chromosome Y clone:PTB-129E12, complete sequences Length = 193714 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ttcctcacttaacgtggcat 271 |||||||||||||||||||| Sbjct: 49293 ttcctcacttaacgtggcat 49274
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gctccagccactgcggcacc 175 |||||||||||||||||||| Sbjct: 2768352 gctccagccactgcggcacc 2768371
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ttcctcacttaacgtggcat 271 |||||||||||||||||||| Sbjct: 5894097 ttcctcacttaacgtggcat 5894078
>gb|AF149806.1| Oryza sativa hypothetical protein, fertilin alpha subunit, membrane protein homolog, and Myb-related protein genes, complete cds; and unknown gene Length = 33178 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 accatggcatgttccatcat 404 |||||||||||||||||||| Sbjct: 6970 accatggcatgttccatcat 6951
>gb|AC159229.2| Mus musculus BAC clone RP24-351I2 from chromosome 12, complete sequence Length = 134517 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 640 cctgaaatctcaacaaatta 659 |||||||||||||||||||| Sbjct: 123512 cctgaaatctcaacaaatta 123493
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 accatggcatgttccatcat 404 |||||||||||||||||||| Sbjct: 381141 accatggcatgttccatcat 381122
>gb|AC150909.3| Pan troglodytes BAC clone CH251-1056O7 from chromosome y, complete sequence Length = 178039 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ttcctcacttaacgtggcat 271 |||||||||||||||||||| Sbjct: 54814 ttcctcacttaacgtggcat 54795
>gb|AC156805.2| Pan troglodytes BAC clone CH251-830G14 from chromosome y, complete sequence Length = 230623 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ttcctcacttaacgtggcat 271 |||||||||||||||||||| Sbjct: 214849 ttcctcacttaacgtggcat 214868
>gb|AC129951.9| Mus musculus chromosome 15, clone RP23-127B14, complete sequence Length = 211987 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 462 agcttagtagataattttcctaag 485 |||||||||||||||| ||||||| Sbjct: 153415 agcttagtagataattatcctaag 153438
>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644B06 Length = 194509 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 accatggcatgttccatcat 404 |||||||||||||||||||| Sbjct: 91094 accatggcatgttccatcat 91075
>emb|AL831750.8| Mouse DNA sequence from clone RP23-37L2 on chromosome X, complete sequence Length = 189991 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 381 cttcaccatggcatgttccatcat 404 |||||||||| ||||||||||||| Sbjct: 129417 cttcaccatgccatgttccatcat 129440
>dbj|AK099594.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044A06, full insert sequence Length = 2469 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 accatggcatgttccatcat 404 |||||||||||||||||||| Sbjct: 2032 accatggcatgttccatcat 2013
>emb|CR932358.4| Zebrafish DNA sequence from clone DKEY-105J12 in linkage group 12, complete sequence Length = 138570 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 acttactaactaaataattt 585 |||||||||||||||||||| Sbjct: 130829 acttactaactaaataattt 130810
>emb|AL954688.9| Zebrafish DNA sequence from clone CH211-212L1 in linkage group 4, complete sequence Length = 210027 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 acttactaactaaataattt 585 |||||||||||||||||||| Sbjct: 21311 acttactaactaaataattt 21292 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,742,631 Number of Sequences: 3902068 Number of extensions: 5742631 Number of successful extensions: 101418 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101156 Number of HSP's gapped (non-prelim): 262 length of query: 683 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 660 effective length of database: 17,143,297,704 effective search space: 11314576484640 effective search space used: 11314576484640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)