ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal10c08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 981 bits (495), Expect = 0.0 Identities = 544/555 (98%), Gaps = 5/555 (0%) Strand = Plus / Minus Query: 8 tatttagtgatatattaacaaaacatgcccagcaatcgcttggcatgcgatgcggactta 67 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1684 tatttagagatatattaacaaaacatgcccagcaatcgcttgg-atgcgatgcggactta 1626 Query: 68 n-gtaggtaaaacatnagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgcc 126 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1625 gtgtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgcc 1566 Query: 127 gt-cgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 185 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1565 gttcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 1506 Query: 186 gca-cgggcaaagtaccttgctgtgctcctttacctnctcctatgcagcaagagatggtg 244 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1505 gcatcgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtg 1446 Query: 245 ggtgt-gtatggagaattttctaaccgtagaaggaaccagncttcatcgcatcctggtta 303 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1445 ggtgttgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggtta 1386 Query: 304 gcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattg 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1385 gcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattg 1326 Query: 364 tcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggc 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1325 tcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggc 1266 Query: 424 tgctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgatt 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1265 tgctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgatt 1206 Query: 484 ccggtagagccgacccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccg 543 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1205 ccggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccg 1146 Query: 544 aaaaagtcaatggat 558 ||||||||||||||| Sbjct: 1145 aaaaagtcaatggat 1131
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 769 bits (388), Expect = 0.0 Identities = 510/548 (93%), Gaps = 8/548 (1%) Strand = Plus / Minus Query: 17 atatattaacaaaacatgcccagcaatcgcttggcatgcgatgcgg-acttangta---- 71 |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttgg-atgcgatgcggtacttaggtacaaa 688 Query: 72 -ggtaaaacatnagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcg 130 | |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 687 ggataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcg 629 Query: 131 tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 190 || ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || Sbjct: 628 tcactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtaca 569 Query: 191 ggcaaagtaccttgctgtgctcctttacctnctcctatgcagcaagagatggtgggtgtg 250 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct: 568 ggcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtg 509 Query: 251 tatggagaattttctaaccgtagaaggaaccagncttcatcgcatcctggttagcatcac 310 |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 508 tatggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcac 449 Query: 311 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 389 Query: 371 cctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcga 430 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct: 388 cctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaa 329 Query: 431 aggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtag 490 ||||||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct: 328 aggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtag 269 Query: 491 agccgacccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagt 550 || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 268 aggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagt 209 Query: 551 caatggat 558 | |||||| Sbjct: 208 cgatggat 201
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 769 bits (388), Expect = 0.0 Identities = 510/548 (93%), Gaps = 8/548 (1%) Strand = Plus / Minus Query: 17 atatattaacaaaacatgcccagcaatcgcttggcatgcgatgcgg-acttangta---- 71 |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttgg-atgcgatgcggtacttaggtacaaa 1538 Query: 72 -ggtaaaacatnagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcg 130 | |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1537 ggataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcg 1479 Query: 131 tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 190 || ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || Sbjct: 1478 tcactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtaca 1419 Query: 191 ggcaaagtaccttgctgtgctcctttacctnctcctatgcagcaagagatggtgggtgtg 250 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct: 1418 ggcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtg 1359 Query: 251 tatggagaattttctaaccgtagaaggaaccagncttcatcgcatcctggttagcatcac 310 |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 1358 tatggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcac 1299 Query: 311 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1298 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 1239 Query: 371 cctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcga 430 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct: 1238 cctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaa 1179 Query: 431 aggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtag 490 ||||||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct: 1178 aggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtag 1119 Query: 491 agccgacccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagt 550 || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1118 aggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagt 1059 Query: 551 caatggat 558 | |||||| Sbjct: 1058 cgatggat 1051
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 644 bits (325), Expect = 0.0 Identities = 332/335 (99%) Strand = Plus / Minus Query: 217 acctnctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 276 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 277 gaaccagncttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 336 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 337 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 397 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116 Query: 457 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctaatcg 516 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 7056 Query: 517 tcgtacacccgagcacgcagagcaccgaaaaagtc 551 ||||||||||||||||||||||||||||||||||| Sbjct: 7055 tcgtacacccgagcacgcagagcaccgaaaaagtc 7021 Score = 396 bits (200), Expect = e-107 Identities = 214/218 (98%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 3 caatatatttagtgatatattaacaaaacatgcccagcaatcgcttggcatgcgatgcgg 62 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 7740 caatatatttagagatatattaacaaaacatgcccagcaatcgcttgg-atgcgatgcgg 7682 Query: 63 acttangtaggtaaaacatnagatattaaaagtggcatgcttaaaaggtgtaaaggcagc 122 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 7681 acttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagc 7622 Query: 123 tgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaacctt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7621 tgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaacctt 7562 Query: 183 ccggcacgggcaaagtaccttgctgtgctcctttacct 220 |||||||||||||||||||||||||||||||||||||| Sbjct: 7561 ccggcacgggcaaagtaccttgctgtgctcctttacct 7524 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 343 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 402 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 403 ttctcgactgtcatctttggctgctcgaa 431 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 492 gccgacccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 551 |||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753 Query: 552 aatgga 557 ||||| Sbjct: 3752 gatgga 3747
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 591 bits (298), Expect = e-165 Identities = 425/467 (91%), Gaps = 2/467 (0%) Strand = Plus / Minus Query: 91 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 150 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468 Query: 151 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 210 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1408 Query: 211 tcctttacctnctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccg 270 |||||||||| |||||||||||||||||||||||||||| ||| ||| | ||||||||| Sbjct: 1407 tcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttctaaccg 1350 Query: 271 tagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggctcatg 330 ||||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||||||| Sbjct: 1349 tagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggctcatg 1290 Query: 331 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 390 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 1289 taagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtggccg 1230 Query: 391 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 450 ||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||||||| Sbjct: 1229 tactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtcccgc 1170 Query: 451 gagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacc 510 |||||||||||||||||||| |||||||| |||||||| || ||||||||||||||| Sbjct: 1169 gagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcgcacc 1110 Query: 511 taatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 557 | | ||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 1109 tcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatgga 1063
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 565 bits (285), Expect = e-158 Identities = 290/292 (99%) Strand = Plus / Minus Query: 267 accgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggct 326 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 327 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 387 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988 Query: 447 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928 Query: 507 cacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggat 558 ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggat 876 Score = 394 bits (199), Expect = e-106 Identities = 213/217 (98%), Gaps = 1/217 (0%) Strand = Plus / Minus Query: 3 caatatatttagtgatatattaacaaaacatgcccagcaatcgcttggcatgcgatgcgg 62 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1380 caatatatttagagatatattaacaaaacatgcccagcaatcgcttgg-atgcgatgcgg 1322 Query: 63 acttangtaggtaaaacatnagatattaaaagtggcatgcttaaaaggtgtaaaggcagc 122 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1321 acttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagc 1262 Query: 123 tgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaacctt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1261 tgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaacctt 1202 Query: 183 ccggcacgggcaaagtaccttgctgtgctcctttacc 219 ||||||||||||||||||||||||||||||||||||| Sbjct: 1201 ccggcacgggcaaagtaccttgctgtgctcctttacc 1165
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 507 bits (256), Expect = e-140 Identities = 294/307 (95%) Strand = Plus / Minus Query: 245 ggtgtgtatggagaattttctaaccgtagaaggaaccagncttcatcgcatcctggttag 304 |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 305 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 365 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 425 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 484 |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| | Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69 Query: 485 cggtagagccgacccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccga 544 |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 68 cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccga 9 Query: 545 aaaagtc 551 ||||||| Sbjct: 8 aaaagtc 2
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 373 bits (188), Expect = e-100 Identities = 265/291 (91%) Strand = Plus / Minus Query: 267 accgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggct 326 ||||||||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 327 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 386 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 387 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 446 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184 Query: 447 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 506 |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124 Query: 507 cacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 557 ||||| |||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 1123 cacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatgga 1073 Score = 176 bits (89), Expect = 5e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 91 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 150 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 151 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 210 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 211 tcctttacc 219 ||||||||| Sbjct: 1369 tcctttacc 1361
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 123 bits (62), Expect = 7e-25 Identities = 178/217 (82%) Strand = Plus / Plus Query: 263 tctaaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcct 322 ||||||||||||||||||||| |||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 323 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 382 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 383 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 442 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485 Query: 443 cgtcccgcgagttcaccagcctcttgccaatgttctc 479 | |||| |||||||||||||||||||||||||||||| Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 118 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 177 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 178 accttccggcacggg 192 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 44.1 bits (22), Expect = 0.48 Identities = 43/50 (86%) Strand = Plus / Plus Query: 496 acccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaa 545 |||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 451 gagttcaccagcctcttgccaatgttctc 479 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 123 bits (62), Expect = 7e-25 Identities = 178/217 (82%) Strand = Plus / Plus Query: 263 tctaaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcct 322 ||||||||||||||||||||| |||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 323 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 382 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 383 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 442 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362 Query: 443 cgtcccgcgagttcaccagcctcttgccaatgttctc 479 | |||| |||||||||||||||||||||||||||||| Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 118 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 177 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 178 accttccggcacggg 192 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 44.1 bits (22), Expect = 0.48 Identities = 43/50 (86%) Strand = Plus / Plus Query: 496 acccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaa 545 |||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 451 gagttcaccagcctcttgccaatgttctc 479 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 117 bits (59), Expect = 4e-23 Identities = 175/214 (81%) Strand = Plus / Minus Query: 266 aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 325 |||||||||||||||||| |||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 326 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 385 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 386 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 445 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137 Query: 446 cccgcgagttcaccagcctcttgccaatgttctc 479 ||| |||||||||||||||||||||||||||||| Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Minus Query: 496 acccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 555 |||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027 Query: 556 gat 558 ||| Sbjct: 1026 gat 1024
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 113 bits (57), Expect = 6e-22 Identities = 173/212 (81%) Strand = Plus / Minus Query: 268 ccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggctc 327 |||||||||||||||| |||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 328 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 387 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 388 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 447 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 448 cgcgagttcaccagcctcttgccaatgttctc 479 | |||||||||||||||||||||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Minus Query: 496 acccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 555 |||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022 Query: 556 gat 558 ||| Sbjct: 1021 gat 1019
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 123 bits (62), Expect = 7e-25 Identities = 178/217 (82%) Strand = Plus / Plus Query: 263 tctaaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcct 322 ||||||||||||||||||||| |||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 323 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 382 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 383 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 442 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624 Query: 443 cgtcccgcgagttcaccagcctcttgccaatgttctc 479 | |||| |||||||||||||||||||||||||||||| Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 118 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 177 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 178 accttccggcacggg 192 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 44.1 bits (22), Expect = 0.48 Identities = 43/50 (86%) Strand = Plus / Plus Query: 496 acccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaa 545 |||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 451 gagttcaccagcctcttgccaatgttctc 479 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||||||||||||||||||| |||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420 Score = 117 bits (59), Expect = 4e-23 Identities = 175/214 (81%) Strand = Plus / Minus Query: 266 aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 325 |||||||||||||||||| |||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 326 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 385 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 386 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 445 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131 Query: 446 cccgcgagttcaccagcctcttgccaatgttctc 479 ||| |||||||||||||||||||||||||||||| Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Minus Query: 496 acccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 555 |||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021 Query: 556 gat 558 ||| Sbjct: 1020 gat 1018
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||||||||||||||||||| |||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458 Score = 117 bits (59), Expect = 4e-23 Identities = 175/214 (81%) Strand = Plus / Minus Query: 266 aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 325 |||||||||||||||||| |||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 326 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 385 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 386 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 445 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169 Query: 446 cccgcgagttcaccagcctcttgccaatgttctc 479 ||| |||||||||||||||||||||||||||||| Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Minus Query: 496 acccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 555 |||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059 Query: 556 gat 558 ||| Sbjct: 1058 gat 1056
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||||||||||||||||||| |||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457 Score = 117 bits (59), Expect = 4e-23 Identities = 175/214 (81%) Strand = Plus / Minus Query: 266 aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 325 |||||||||||||||||| |||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 326 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 385 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 386 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 445 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168 Query: 446 cccgcgagttcaccagcctcttgccaatgttctc 479 ||| |||||||||||||||||||||||||||||| Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Minus Query: 496 acccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 555 |||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058 Query: 556 gat 558 ||| Sbjct: 1057 gat 1055
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||||||||||||||||||| |||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241 Score = 117 bits (59), Expect = 4e-23 Identities = 175/214 (81%) Strand = Plus / Minus Query: 266 aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 325 |||||||||||||||||| |||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 326 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 385 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 386 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 445 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952 Query: 446 cccgcgagttcaccagcctcttgccaatgttctc 479 ||| |||||||||||||||||||||||||||||| Sbjct: 951 ccctcgagttcaccagcctcttgccaatgttctc 918 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Minus Query: 496 acccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 555 |||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842 Query: 556 gat 558 ||| Sbjct: 841 gat 839
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 123 bits (62), Expect = 7e-25 Identities = 178/217 (82%) Strand = Plus / Plus Query: 263 tctaaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcct 322 ||||||||||||||||||||| |||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 323 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 382 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 383 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 442 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073 Query: 443 cgtcccgcgagttcaccagcctcttgccaatgttctc 479 | |||| |||||||||||||||||||||||||||||| Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 118 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 177 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 178 accttccggcacggg 192 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 44.1 bits (22), Expect = 0.48 Identities = 43/50 (86%) Strand = Plus / Plus Query: 496 acccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaa 545 |||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 451 gagttcaccagcctcttgccaatgttctc 479 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||||||||||||||||||| |||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462 Score = 117 bits (59), Expect = 4e-23 Identities = 175/214 (81%) Strand = Plus / Minus Query: 266 aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 325 |||||||||||||||||| |||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 326 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 385 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 386 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 445 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173 Query: 446 cccgcgagttcaccagcctcttgccaatgttctc 479 ||| |||||||||||||||||||||||||||||| Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Minus Query: 496 acccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 555 |||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063 Query: 556 gat 558 ||| Sbjct: 1062 gat 1060
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 113 bits (57), Expect = 6e-22 Identities = 173/212 (81%) Strand = Plus / Minus Query: 268 ccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggctc 327 |||||||||||||||| |||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 328 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 387 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 388 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 447 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 448 cgcgagttcaccagcctcttgccaatgttctc 479 | |||||||||||||||||||||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Minus Query: 496 acccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 555 |||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057 Query: 556 gat 558 ||| Sbjct: 1056 gat 1054
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 106 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 165 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 166 ttggtcggtgcaaccttccggcacgggca 194 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 119 bits (60), Expect = 1e-23 Identities = 170/207 (82%) Strand = Plus / Minus Query: 264 ctaaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctg 323 |||||| |||||||| |||| ||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 324 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 383 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 384 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 443 || |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828 Query: 444 gtcccgcgagttcaccagcctcttgcc 470 ||| |||||||||||||||||||||| Sbjct: 827 ctccagcgagttcaccagcctcttgcc 801 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 110 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 169 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 170 tcggtgcaaccttc 183 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 117 bits (59), Expect = 4e-23 Identities = 175/214 (81%) Strand = Plus / Minus Query: 266 aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 325 |||||||||||||||||| |||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 326 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 385 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 386 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 445 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386 Query: 446 cccgcgagttcaccagcctcttgccaatgttctc 479 ||| |||||||||||||||||||||||||||||| Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Minus Query: 496 acccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 555 |||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276 Query: 556 gat 558 ||| Sbjct: 275 gat 273
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 117 bits (59), Expect = 4e-23 Identities = 87/95 (91%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||||||||||||||||||| |||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469 Score = 117 bits (59), Expect = 4e-23 Identities = 175/214 (81%) Strand = Plus / Minus Query: 266 aaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggc 325 |||||||||||||||||| |||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 326 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 385 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 386 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 445 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180 Query: 446 cccgcgagttcaccagcctcttgccaatgttctc 479 ||| |||||||||||||||||||||||||||||| Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146 Score = 46.1 bits (23), Expect = 0.12 Identities = 53/63 (84%) Strand = Plus / Minus Query: 496 acccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 555 |||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070 Query: 556 gat 558 ||| Sbjct: 1069 gat 1067
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 113 bits (57), Expect = 6e-22 Identities = 164/200 (82%) Strand = Plus / Minus Query: 271 tagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggctcatg 330 |||||||| |||| ||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 331 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 390 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 391 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 450 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 451 gagttcaccagcctcttgcc 470 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 110 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 169 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 170 tcggtgcaaccttc 183 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 109 bits (55), Expect = 1e-20 Identities = 175/215 (81%) Strand = Plus / Minus Query: 343 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 402 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 403 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 462 ||||||| |||||||| ||||| ||||| ||| ||||| |||| ||||| || ||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 463 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctaatcgtcgtac 522 | |||| |||||||||| ||| | |||||||||||||||||||| ||||||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063 Query: 523 acccgagcacgcagagcaccgaaaaagtcaatgga 557 ||||| || ||||| || ||||| ||||| ||||| Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatgga 1028
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 97.6 bits (49), Expect = 4e-17 Identities = 165/204 (80%) Strand = Plus / Minus Query: 264 ctaaccgtagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctg 323 |||||| |||||||| |||| ||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249 Query: 324 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 383 ||||| ||| |||| || |||||||| | ||| || || ||||| ||||| || ||||| Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189 Query: 384 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 443 | |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129 Query: 444 gtcccgcgagttcaccagcctctt 467 ||| ||||||||||||||||||| Sbjct: 1128 ctccagcgagttcaccagcctctt 1105 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 110 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 169 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 170 tcggtgcaaccttc 183 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 91.7 bits (46), Expect = 2e-15 Identities = 159/197 (80%) Strand = Plus / Minus Query: 271 tagaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggctcatg 330 |||||||| |||| ||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 331 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 390 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 391 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 450 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 451 gagttcaccagcctctt 467 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 110 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 169 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 170 tcggtgcaaccttc 183 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 89.7 bits (45), Expect = 9e-15 Identities = 131/160 (81%) Strand = Plus / Minus Query: 272 agaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 331 ||||||| |||| |||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 332 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 391 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 392 actctagcagcttctcgactgtcatctttggctgctcgaa 431 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 89.7 bits (45), Expect = 9e-15 Identities = 131/160 (81%) Strand = Plus / Minus Query: 272 agaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 331 ||||||| |||| |||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 332 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 391 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 392 actctagcagcttctcgactgtcatctttggctgctcgaa 431 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 89.7 bits (45), Expect = 9e-15 Identities = 131/160 (81%) Strand = Plus / Minus Query: 272 agaaggaaccagncttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 331 ||||||| |||| |||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 332 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 391 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 392 actctagcagcttctcgactgtcatctttggctgctcgaa 431 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 343 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 402 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 403 ttctcgactgtcatctttggctgctcgaa 431 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 492 gccgacccacttgcgcacctaatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 551 |||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184 Query: 552 aatgga 557 ||||| Sbjct: 1183 gatgga 1178
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 289 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 348 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 349 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 404 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 100 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 159 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 160 ggcattttggtcggtgcaaccttccggcacgggca 194 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 1e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 300 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 359 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 360 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 419 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 420 tggctgctcgaa 431 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 534 cagagcaccgaaaaagtcaatggat 558 ||||||||||||||||||||||||| Sbjct: 1113 cagagcaccgaaaaagtcaatggat 1089
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 48.1 bits (24), Expect = 0.031 Identities = 39/44 (88%) Strand = Plus / Minus Query: 514 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 557 ||||||||||| || |||||||| || ||||| ||||||||||| Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatgga 2680
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 48.1 bits (24), Expect = 0.031 Identities = 39/44 (88%) Strand = Plus / Minus Query: 514 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 557 ||||||||||| || |||||||| || ||||| ||||||||||| Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatgga 990
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.48 Identities = 43/50 (86%) Strand = Plus / Minus Query: 292 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 341 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 305 catcacccagagctgcctggct 326 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>gb|AC154338.2| Mus musculus BAC clone RP23-247M16 from chromosome 17, complete sequence Length = 190285 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 tatatttagtgatatattaac 26 ||||||||||||||||||||| Sbjct: 64946 tatatttagtgatatattaac 64926
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 atgcagcaagagatggtgggt 247 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 343 agctgcacacgcttgacattgtcctgctc 371 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>emb|AL807745.7| Mouse DNA sequence from clone RP23-20E10 on chromosome 4, complete sequence Length = 218691 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 9 atttagtgatatattaacaaaacat 33 ||||||||| ||||||||||||||| Sbjct: 167292 atttagtgacatattaacaaaacat 167268
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 catcacccagagctgcctggctca 328 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 7.6 Identities = 68/84 (80%) Strand = Plus / Minus Query: 301 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 360 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 361 ttgtcctgctcctggacgagcatg 384 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gtcagcaagctgcacacgct 355 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 catcacccagagctgcctggctca 328 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ttgacattgtcctgctcctg 374 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 catcacccagagctgcctggctca 328 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 109 ggtgtaaaggcagctgccgtcgtcgctc 136 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>gb|AC026789.5| Homo sapiens chromosome 5 clone CTD-2219P2, complete sequence Length = 176072 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 aatatatttagtgatatatt 23 |||||||||||||||||||| Sbjct: 27741 aatatatttagtgatatatt 27760
>gb|AC026727.6| Homo sapiens chromosome 5 clone CTD-2258D6, complete sequence Length = 176072 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 aatatatttagtgatatatt 23 |||||||||||||||||||| Sbjct: 27741 aatatatttagtgatatatt 27760
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 catcacccagagctgcctggctca 328 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 catcacccagagctgcctggctca 328 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 catcacccagagctgcctggctca 328 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX248080.21| Zebrafish DNA sequence from clone CH211-226C1 in linkage group 5, complete sequence Length = 188075 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 atatttagtgatatattaac 26 |||||||||||||||||||| Sbjct: 109790 atatttagtgatatattaac 109809
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 tggcatgcttaaaaggtgta 114 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 ttgacattgtcctgctcctg 374 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>gb|AC010226.5|AC010226 Homo sapiens chromosome 5 clone CTC-286N18, complete sequence Length = 147140 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 aatatatttagtgatatatt 23 |||||||||||||||||||| Sbjct: 37743 aatatatttagtgatatatt 37724
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 catcacccagagctgcctggctca 328 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>emb|CT027665.2| Medicago truncatula chromosome 5 clone mth2-69e15, COMPLETE SEQUENCE Length = 130069 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 aatatatttagtgatatatt 23 |||||||||||||||||||| Sbjct: 27747 aatatatttagtgatatatt 27766
>emb|AL845369.7| Zebrafish DNA sequence from clone CH211-12E13 in linkage group 5, complete sequence Length = 190981 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 atatttagtgatatattaac 26 |||||||||||||||||||| Sbjct: 9807 atatttagtgatatattaac 9826 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,663,617 Number of Sequences: 3902068 Number of extensions: 3663617 Number of successful extensions: 66277 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 66030 Number of HSP's gapped (non-prelim): 205 length of query: 558 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 535 effective length of database: 17,143,297,704 effective search space: 9171664271640 effective search space used: 9171664271640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
