| Clone Name | rbaal10b19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_104006.1| Arabidopsis thaliana transmembrane receptor AT1G51280 transcript variant AT1G51280.1 mRNA, complete cds Length = 723 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 489 atcgtccgtgggggaggcagcattg 513 ||||||||||| ||||||||||||| Sbjct: 57 atcgtccgtggaggaggcagcattg 33
>ref|NM_001036092.1| Arabidopsis thaliana transmembrane receptor AT1G51280 transcript variant AT1G51280.2 mRNA, complete cds Length = 818 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 489 atcgtccgtgggggaggcagcattg 513 ||||||||||| ||||||||||||| Sbjct: 57 atcgtccgtggaggaggcagcattg 33
>gb|BT015497.1| Arabidopsis thaliana At1g51280 mRNA sequence Length = 720 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 489 atcgtccgtgggggaggcagcattg 513 ||||||||||| ||||||||||||| Sbjct: 54 atcgtccgtggaggaggcagcattg 30
>gb|AC125565.5| Rattus norvegicus 2 BAC CH230-9H16 (Children's Hospital Oakland Research Institute) complete sequence Length = 217080 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 510 attgcttactgaagaatggct 530 ||||||||||||||||||||| Sbjct: 100928 attgcttactgaagaatggct 100948
>emb|AL391817.18| Human DNA sequence from clone RP11-91B9 on chromosome 1 Contains the PRELP gene for proline arginine-rich end leucine-rich repeat protein and the OPTC gene for opticin, complete sequence Length = 162436 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 cagtttgtatctttgaaaaat 292 ||||||||||||||||||||| Sbjct: 86264 cagtttgtatctttgaaaaat 86244
>gb|AC102801.2| Homo sapiens chromosome 8, clone RP11-960P16, complete sequence Length = 119671 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 tattacaaattatttccaaac 75 ||||||||||||||||||||| Sbjct: 114116 tattacaaattatttccaaac 114136
>gb|AC100782.2| Homo sapiens, clone RP11-300E4, complete sequence Length = 185123 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 tattacaaattatttccaaac 75 ||||||||||||||||||||| Sbjct: 143168 tattacaaattatttccaaac 143148
>dbj|AK221479.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-42-B22 Length = 1217 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 489 atcgtccgtgggggaggcagcattg 513 ||||||||||| ||||||||||||| Sbjct: 447 atcgtccgtggaggaggcagcattg 423
>emb|AL049831.2|CNS00008 Human chromosome 14 DNA sequence BAC R-330O19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 218956 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 ttttctagtattacaaattat 67 ||||||||||||||||||||| Sbjct: 142438 ttttctagtattacaaattat 142418
>gb|AC006085.1| Arabidopsis thaliana chromosome I BAC F11M15 genomic sequence, complete sequence Length = 105807 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 489 atcgtccgtgggggaggcagcattg 513 ||||||||||| ||||||||||||| Sbjct: 62336 atcgtccgtggaggaggcagcattg 62312
>ref|NM_002711.2| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 3A (glycogen and sarcoplasmic reticulum binding subunit, skeletal muscle) (PPP1R3A), mRNA Length = 6779 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tattacaaattatttccaaa 74 |||||||||||||||||||| Sbjct: 6587 tattacaaattatttccaaa 6568
>gb|AC118696.14| Mus musculus chromosome 3, clone RP24-62O16, complete sequence Length = 190616 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 atctttaccatcctcatctt 475 |||||||||||||||||||| Sbjct: 142710 atctttaccatcctcatctt 142691
>gb|AC110908.13| Mus musculus chromosome 7, clone RP24-181E10, complete sequence Length = 173230 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 cttctgtgcttctgtttggg 582 |||||||||||||||||||| Sbjct: 27874 cttctgtgcttctgtttggg 27893
>ref|XM_426318.1| PREDICTED: Gallus gallus similar to Serine protease DESC1 precursor (LOC428762), mRNA Length = 1830 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 aagagaagagcagaagctat 265 |||||||||||||||||||| Sbjct: 1135 aagagaagagcagaagctat 1154
>gb|AC157552.10| Mus musculus chromosome 7, clone RP23-89C10, complete sequence Length = 195587 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 cttctgtgcttctgtttggg 582 |||||||||||||||||||| Sbjct: 188784 cttctgtgcttctgtttggg 188803
>gb|AC092465.5| Homo sapiens BAC clone RP11-473L7 from 7, complete sequence Length = 188158 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tattacaaattatttccaaa 74 |||||||||||||||||||| Sbjct: 161553 tattacaaattatttccaaa 161572
>ref|XM_823325.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.02.0860) partial mRNA Length = 2730 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 atggcggtttcgcacgagca 369 |||||||||||||||||||| Sbjct: 2593 atggcggtttcgcacgagca 2574
>gb|AC091518.22| Mus musculus strain 129/SvJ clone mgs1-257j2 map 10, complete sequence Length = 124270 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 272 cagtttgtatctttgaaaaatctt 295 |||||||||||||| ||||||||| Sbjct: 1239 cagtttgtatcttttaaaaatctt 1262
>emb|AL031054.1|HS48G12 Human DNA sequence from clone RP1-48G12 on chromosome Xq27.1-27.3 Contains a CpG island, complete sequence Length = 199016 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 47 ttttctagtattacaaattatttc 70 |||||||| ||||||||||||||| Sbjct: 123712 ttttctagaattacaaattatttc 123689
>emb|AL929016.5| Zebrafish DNA sequence from clone DKEY-24J9 in linkage group 4 Contains the gene for a novel protein (zgc:63880), the 3' end of the gene for a novel protein similar to vertebrate KCND2, the 5' end of the ing3 gene for inhibitor of growth family member 3 and a CpG island, complete sequence Length = 200582 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 acaaattatttccaaaccca 78 |||||||||||||||||||| Sbjct: 164874 acaaattatttccaaaccca 164893
>emb|CR513786.5| Zebrafish DNA sequence from clone CH211-92F19 in linkage group 14, complete sequence Length = 97391 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tttgtgttgttttgccttct 21 |||||||||||||||||||| Sbjct: 83940 tttgtgttgttttgccttct 83921
>emb|BX511181.13| Zebrafish DNA sequence from clone DKEY-100H5 in linkage group 24, complete sequence Length = 160005 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caaattatttccaaacccaa 79 |||||||||||||||||||| Sbjct: 10105 caaattatttccaaacccaa 10086
>gb|AC093841.3| Homo sapiens BAC clone RP11-438F11 from 4, complete sequence Length = 168190 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 552 aattgttccctcttctgtgcttct 575 ||||||||||||||||||| |||| Sbjct: 24012 aattgttccctcttctgtggttct 23989
>gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3, complete sequence Length = 174133 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 ttgtatctttgaaaaatctt 295 |||||||||||||||||||| Sbjct: 17575 ttgtatctttgaaaaatctt 17594
>emb|BX005336.10| Zebrafish DNA sequence from clone DKEY-85K7 in linkage group 7, complete sequence Length = 233826 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ctcacaagagaagagcagaa 260 |||||||||||||||||||| Sbjct: 213085 ctcacaagagaagagcagaa 213104
>gb|AC010903.8| Homo sapiens BAC clone RP11-550H9 from 2, complete sequence Length = 91723 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 cctgaattgttccctcttct 567 |||||||||||||||||||| Sbjct: 60454 cctgaattgttccctcttct 60435
>gb|AC129176.6| Mus musculus BAC clone RP23-124D10 from chromosome unknown, complete sequence Length = 211031 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 563 cttctgtgcttctgtttggg 582 |||||||||||||||||||| Sbjct: 119766 cttctgtgcttctgtttggg 119747
>gb|AC133942.3| Mus musculus BAC clone RP23-472J11 from chromosome 7, complete sequence Length = 186014 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 563 cttctgtgcttctgtttggg 582 |||||||||||||||||||| Sbjct: 158511 cttctgtgcttctgtttggg 158492
>emb|BX855607.2| Mouse DNA sequence from clone RP24-562D24 on chromosome X, complete sequence Length = 24086 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 attcgtccttgttctctact 451 |||||||||||||||||||| Sbjct: 13652 attcgtccttgttctctact 13633
>emb|BX247945.6| Zebrafish DNA sequence from clone CH211-209L14 in linkage group 24, complete sequence Length = 199345 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caaattatttccaaacccaa 79 |||||||||||||||||||| Sbjct: 31863 caaattatttccaaacccaa 31844
>gb|AC154381.2| Mus musculus BAC clone RP23-42E2 from 16, complete sequence Length = 201052 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 tttctagtattacaaattatttcc 71 |||||||||||||||| ||||||| Sbjct: 58021 tttctagtattacaaagtatttcc 58044
>emb|AL355885.4|CNS05TCW Human chromosome 14 DNA sequence BAC R-434O22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 174442 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 559 ccctcttctgtgcttctgtttggg 582 |||| ||||||||||||||||||| Sbjct: 154253 ccctgttctgtgcttctgtttggg 154230
>dbj|AP002806.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-721F8, complete sequence Length = 161871 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 cagcattgcttactgaagaa 525 |||||||||||||||||||| Sbjct: 80078 cagcattgcttactgaagaa 80097
>gb|AC002980.1|AC002980 Homo sapiens Xp22 BAC 620F15 (Genome Systems BAC library) complete sequence Length = 141475 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 557 ttccctcttctgtgcttctg 576 |||||||||||||||||||| Sbjct: 128364 ttccctcttctgtgcttctg 128345
>gb|AF024578.1|HSPPP1R3S3 Homo sapiens type-1 protein phosphatase skeletal muscle glycogen targeting subunit (PPP1R3) gene, exon 4, and complete cds Length = 7130 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tattacaaattatttccaaa 74 |||||||||||||||||||| Sbjct: 5733 tattacaaattatttccaaa 5714
>emb|AL121603.4|CNS01DS0 Human chromosome 14 DNA sequence BAC R-73E17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 141534 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 559 ccctcttctgtgcttctgtttggg 582 |||| ||||||||||||||||||| Sbjct: 38206 ccctgttctgtgcttctgtttggg 38183
>gb|AC152500.7| Mus musculus BAC clone RP24-555P14 from chromosome 10, complete sequence Length = 170235 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 272 cagtttgtatctttgaaaaatctt 295 |||||||||||||| ||||||||| Sbjct: 57947 cagtttgtatcttttaaaaatctt 57970 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,293,610 Number of Sequences: 3902068 Number of extensions: 5293610 Number of successful extensions: 103149 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103073 Number of HSP's gapped (non-prelim): 76 length of query: 638 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 615 effective length of database: 17,143,297,704 effective search space: 10543128087960 effective search space used: 10543128087960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)