ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10b19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_104006.1| Arabidopsis thaliana transmembrane receptor AT1... 42 2.2
2ref|NM_001036092.1| Arabidopsis thaliana transmembrane receptor ... 42 2.2
3gb|BT015497.1| Arabidopsis thaliana At1g51280 mRNA sequence 42 2.2
4gb|AC125565.5| Rattus norvegicus 2 BAC CH230-9H16 (Children's Ho... 42 2.2
5emb|AL391817.18| Human DNA sequence from clone RP11-91B9 on chro... 42 2.2
6gb|AC102801.2| Homo sapiens chromosome 8, clone RP11-960P16, com... 42 2.2
7gb|AC100782.2| Homo sapiens, clone RP11-300E4, complete sequence 42 2.2
8dbj|AK221479.1| Arabidopsis thaliana mRNA for hypothetical prote... 42 2.2
9emb|AL049831.2|CNS00008 Human chromosome 14 DNA sequence BAC R-3... 42 2.2
10gb|AC006085.1| Arabidopsis thaliana chromosome I BAC F11M15 geno... 42 2.2
11ref|NM_002711.2| Homo sapiens protein phosphatase 1, regulatory ... 40 8.7
12gb|AC118696.14| Mus musculus chromosome 3, clone RP24-62O16, com... 40 8.7
13gb|AC110908.13| Mus musculus chromosome 7, clone RP24-181E10, co... 40 8.7
14ref|XM_426318.1| PREDICTED: Gallus gallus similar to Serine prot... 40 8.7
15gb|AC157552.10| Mus musculus chromosome 7, clone RP23-89C10, com... 40 8.7
16gb|AC092465.5| Homo sapiens BAC clone RP11-473L7 from 7, complet... 40 8.7
17ref|XM_823325.1| Trypanosoma brucei TREU927 hypothetical protein... 40 8.7
18gb|AC091518.22| Mus musculus strain 129/SvJ clone mgs1-257j2 map... 40 8.7
19emb|AL031054.1|HS48G12 Human DNA sequence from clone RP1-48G12 o... 40 8.7
20emb|AL929016.5| Zebrafish DNA sequence from clone DKEY-24J9 in l... 40 8.7
21emb|CR513786.5| Zebrafish DNA sequence from clone CH211-92F19 in... 40 8.7
22emb|BX511181.13| Zebrafish DNA sequence from clone DKEY-100H5 in... 40 8.7
23gb|AC093841.3| Homo sapiens BAC clone RP11-438F11 from 4, comple... 40 8.7
24gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3... 40 8.7
25emb|BX005336.10| Zebrafish DNA sequence from clone DKEY-85K7 in ... 40 8.7
26gb|AC010903.8| Homo sapiens BAC clone RP11-550H9 from 2, complet... 40 8.7
27gb|AC129176.6| Mus musculus BAC clone RP23-124D10 from chromosom... 40 8.7
28gb|AC133942.3| Mus musculus BAC clone RP23-472J11 from chromosom... 40 8.7
29emb|BX855607.2| Mouse DNA sequence from clone RP24-562D24 on chr... 40 8.7
30emb|BX247945.6| Zebrafish DNA sequence from clone CH211-209L14 i... 40 8.7
31gb|AC154381.2| Mus musculus BAC clone RP23-42E2 from 16, complet... 40 8.7
32emb|AL355885.4|CNS05TCW Human chromosome 14 DNA sequence BAC R-4... 40 8.7
33dbj|AP002806.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.7
34gb|AC002980.1|AC002980 Homo sapiens Xp22 BAC 620F15 (Genome Syst... 40 8.7
35gb|AF024578.1|HSPPP1R3S3 Homo sapiens type-1 protein phosphatase... 40 8.7
36emb|AL121603.4|CNS01DS0 Human chromosome 14 DNA sequence BAC R-7... 40 8.7
37gb|AC152500.7| Mus musculus BAC clone RP24-555P14 from chromosom... 40 8.7

>ref|NM_104006.1| Arabidopsis thaliana transmembrane receptor AT1G51280 transcript
           variant AT1G51280.1 mRNA, complete cds
          Length = 723

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 489 atcgtccgtgggggaggcagcattg 513
           ||||||||||| |||||||||||||
Sbjct: 57  atcgtccgtggaggaggcagcattg 33



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>ref|NM_001036092.1| Arabidopsis thaliana transmembrane receptor AT1G51280 transcript
           variant AT1G51280.2 mRNA, complete cds
          Length = 818

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 489 atcgtccgtgggggaggcagcattg 513
           ||||||||||| |||||||||||||
Sbjct: 57  atcgtccgtggaggaggcagcattg 33



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>gb|BT015497.1| Arabidopsis thaliana At1g51280 mRNA sequence
          Length = 720

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 489 atcgtccgtgggggaggcagcattg 513
           ||||||||||| |||||||||||||
Sbjct: 54  atcgtccgtggaggaggcagcattg 30



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>gb|AC125565.5| Rattus norvegicus 2 BAC CH230-9H16 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 217080

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 510    attgcttactgaagaatggct 530
              |||||||||||||||||||||
Sbjct: 100928 attgcttactgaagaatggct 100948



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>emb|AL391817.18| Human DNA sequence from clone RP11-91B9 on chromosome 1 Contains the
             PRELP gene for proline arginine-rich end leucine-rich
             repeat protein and the OPTC gene for opticin, complete
             sequence
          Length = 162436

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 272   cagtttgtatctttgaaaaat 292
             |||||||||||||||||||||
Sbjct: 86264 cagtttgtatctttgaaaaat 86244



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>gb|AC102801.2| Homo sapiens chromosome 8, clone RP11-960P16, complete sequence
          Length = 119671

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 55     tattacaaattatttccaaac 75
              |||||||||||||||||||||
Sbjct: 114116 tattacaaattatttccaaac 114136



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>gb|AC100782.2| Homo sapiens, clone RP11-300E4, complete sequence
          Length = 185123

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 55     tattacaaattatttccaaac 75
              |||||||||||||||||||||
Sbjct: 143168 tattacaaattatttccaaac 143148



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>dbj|AK221479.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL07-42-B22
          Length = 1217

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 489 atcgtccgtgggggaggcagcattg 513
           ||||||||||| |||||||||||||
Sbjct: 447 atcgtccgtggaggaggcagcattg 423



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>emb|AL049831.2|CNS00008 Human chromosome 14 DNA sequence BAC R-330O19 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 218956

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 47     ttttctagtattacaaattat 67
              |||||||||||||||||||||
Sbjct: 142438 ttttctagtattacaaattat 142418



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>gb|AC006085.1| Arabidopsis thaliana chromosome I BAC F11M15 genomic sequence, complete
             sequence
          Length = 105807

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 489   atcgtccgtgggggaggcagcattg 513
             ||||||||||| |||||||||||||
Sbjct: 62336 atcgtccgtggaggaggcagcattg 62312



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>ref|NM_002711.2| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 3A
            (glycogen and sarcoplasmic reticulum binding subunit,
            skeletal muscle) (PPP1R3A), mRNA
          Length = 6779

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 55   tattacaaattatttccaaa 74
            ||||||||||||||||||||
Sbjct: 6587 tattacaaattatttccaaa 6568



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>gb|AC118696.14| Mus musculus chromosome 3, clone RP24-62O16, complete sequence
          Length = 190616

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 456    atctttaccatcctcatctt 475
              ||||||||||||||||||||
Sbjct: 142710 atctttaccatcctcatctt 142691



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>gb|AC110908.13| Mus musculus chromosome 7, clone RP24-181E10, complete sequence
          Length = 173230

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 563   cttctgtgcttctgtttggg 582
             ||||||||||||||||||||
Sbjct: 27874 cttctgtgcttctgtttggg 27893



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>ref|XM_426318.1| PREDICTED: Gallus gallus similar to Serine protease DESC1 precursor
            (LOC428762), mRNA
          Length = 1830

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 246  aagagaagagcagaagctat 265
            ||||||||||||||||||||
Sbjct: 1135 aagagaagagcagaagctat 1154



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>gb|AC157552.10| Mus musculus chromosome 7, clone RP23-89C10, complete sequence
          Length = 195587

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 563    cttctgtgcttctgtttggg 582
              ||||||||||||||||||||
Sbjct: 188784 cttctgtgcttctgtttggg 188803



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>gb|AC092465.5| Homo sapiens BAC clone RP11-473L7 from 7, complete sequence
          Length = 188158

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     tattacaaattatttccaaa 74
              ||||||||||||||||||||
Sbjct: 161553 tattacaaattatttccaaa 161572



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>ref|XM_823325.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.02.0860)
            partial mRNA
          Length = 2730

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 350  atggcggtttcgcacgagca 369
            ||||||||||||||||||||
Sbjct: 2593 atggcggtttcgcacgagca 2574



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>gb|AC091518.22| Mus musculus strain 129/SvJ clone mgs1-257j2 map 10, complete
            sequence
          Length = 124270

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 272  cagtttgtatctttgaaaaatctt 295
            |||||||||||||| |||||||||
Sbjct: 1239 cagtttgtatcttttaaaaatctt 1262



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>emb|AL031054.1|HS48G12 Human DNA sequence from clone RP1-48G12 on chromosome Xq27.1-27.3
              Contains a CpG island, complete sequence
          Length = 199016

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 47     ttttctagtattacaaattatttc 70
              |||||||| |||||||||||||||
Sbjct: 123712 ttttctagaattacaaattatttc 123689



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>emb|AL929016.5| Zebrafish DNA sequence from clone DKEY-24J9 in linkage group 4 Contains
              the gene for a novel protein (zgc:63880), the 3' end of the
              gene for a novel protein similar to vertebrate KCND2, the
              5' end of the ing3 gene for inhibitor of growth family
              member 3 and a CpG island, complete sequence
          Length = 200582

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     acaaattatttccaaaccca 78
              ||||||||||||||||||||
Sbjct: 164874 acaaattatttccaaaccca 164893



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>emb|CR513786.5| Zebrafish DNA sequence from clone CH211-92F19 in linkage group 14,
             complete sequence
          Length = 97391

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     tttgtgttgttttgccttct 21
             ||||||||||||||||||||
Sbjct: 83940 tttgtgttgttttgccttct 83921



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>emb|BX511181.13| Zebrafish DNA sequence from clone DKEY-100H5 in linkage group 24,
             complete sequence
          Length = 160005

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    caaattatttccaaacccaa 79
             ||||||||||||||||||||
Sbjct: 10105 caaattatttccaaacccaa 10086



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>gb|AC093841.3| Homo sapiens BAC clone RP11-438F11 from 4, complete sequence
          Length = 168190

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 552   aattgttccctcttctgtgcttct 575
             ||||||||||||||||||| ||||
Sbjct: 24012 aattgttccctcttctgtggttct 23989



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>gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3, complete sequence
          Length = 174133

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   ttgtatctttgaaaaatctt 295
             ||||||||||||||||||||
Sbjct: 17575 ttgtatctttgaaaaatctt 17594



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>emb|BX005336.10| Zebrafish DNA sequence from clone DKEY-85K7 in linkage group 7, complete
              sequence
          Length = 233826

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    ctcacaagagaagagcagaa 260
              ||||||||||||||||||||
Sbjct: 213085 ctcacaagagaagagcagaa 213104



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>gb|AC010903.8| Homo sapiens BAC clone RP11-550H9 from 2, complete sequence
          Length = 91723

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 548   cctgaattgttccctcttct 567
             ||||||||||||||||||||
Sbjct: 60454 cctgaattgttccctcttct 60435



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>gb|AC129176.6| Mus musculus BAC clone RP23-124D10 from chromosome unknown, complete
              sequence
          Length = 211031

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 563    cttctgtgcttctgtttggg 582
              ||||||||||||||||||||
Sbjct: 119766 cttctgtgcttctgtttggg 119747



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>gb|AC133942.3| Mus musculus BAC clone RP23-472J11 from chromosome 7, complete sequence
          Length = 186014

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 563    cttctgtgcttctgtttggg 582
              ||||||||||||||||||||
Sbjct: 158511 cttctgtgcttctgtttggg 158492



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>emb|BX855607.2| Mouse DNA sequence from clone RP24-562D24 on chromosome X, complete
             sequence
          Length = 24086

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   attcgtccttgttctctact 451
             ||||||||||||||||||||
Sbjct: 13652 attcgtccttgttctctact 13633



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>emb|BX247945.6| Zebrafish DNA sequence from clone CH211-209L14 in linkage group 24,
             complete sequence
          Length = 199345

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    caaattatttccaaacccaa 79
             ||||||||||||||||||||
Sbjct: 31863 caaattatttccaaacccaa 31844



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>gb|AC154381.2| Mus musculus BAC clone RP23-42E2 from 16, complete sequence
          Length = 201052

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    tttctagtattacaaattatttcc 71
             |||||||||||||||| |||||||
Sbjct: 58021 tttctagtattacaaagtatttcc 58044



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>emb|AL355885.4|CNS05TCW Human chromosome 14 DNA sequence BAC R-434O22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 174442

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 559    ccctcttctgtgcttctgtttggg 582
              |||| |||||||||||||||||||
Sbjct: 154253 ccctgttctgtgcttctgtttggg 154230



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>dbj|AP002806.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-721F8, complete
             sequence
          Length = 161871

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 506   cagcattgcttactgaagaa 525
             ||||||||||||||||||||
Sbjct: 80078 cagcattgcttactgaagaa 80097



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>gb|AC002980.1|AC002980 Homo sapiens Xp22 BAC 620F15 (Genome Systems BAC library) complete
              sequence
          Length = 141475

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 557    ttccctcttctgtgcttctg 576
              ||||||||||||||||||||
Sbjct: 128364 ttccctcttctgtgcttctg 128345



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>gb|AF024578.1|HSPPP1R3S3 Homo sapiens type-1 protein phosphatase skeletal muscle glycogen
            targeting subunit (PPP1R3) gene, exon 4, and complete cds
          Length = 7130

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 55   tattacaaattatttccaaa 74
            ||||||||||||||||||||
Sbjct: 5733 tattacaaattatttccaaa 5714



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>emb|AL121603.4|CNS01DS0 Human chromosome 14 DNA sequence BAC R-73E17 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 141534

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 559   ccctcttctgtgcttctgtttggg 582
             |||| |||||||||||||||||||
Sbjct: 38206 ccctgttctgtgcttctgtttggg 38183



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>gb|AC152500.7| Mus musculus BAC clone RP24-555P14 from chromosome 10, complete
             sequence
          Length = 170235

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 272   cagtttgtatctttgaaaaatctt 295
             |||||||||||||| |||||||||
Sbjct: 57947 cagtttgtatcttttaaaaatctt 57970


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,293,610
Number of Sequences: 3902068
Number of extensions: 5293610
Number of successful extensions: 103149
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103073
Number of HSP's gapped (non-prelim): 76
length of query: 638
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 615
effective length of database: 17,143,297,704
effective search space: 10543128087960
effective search space used: 10543128087960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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