ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10b18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FKBP9_MOUSE (Q9Z247) FK506-binding protein 9 precursor (EC 5.2.1... 30 7.2
2BCSA_SALTY (Q93IN2) Cellulose synthase catalytic subunit [UDP-fo... 30 7.2
3BCSA_SALTI (Q8Z291) Cellulose synthase catalytic subunit [UDP-fo... 30 7.2
4XDH_BOVIN (P80457) Xanthine dehydrogenase/oxidase [Includes: Xan... 29 9.5

>FKBP9_MOUSE (Q9Z247) FK506-binding protein 9 precursor (EC 5.2.1.8)|
           (Peptidyl-prolyl cis-trans isomerase) (PPIase)
           (Rotamase) (FKBP65RS)
          Length = 570

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -2

Query: 184 VISPG*PLHMPVILASLWSLNPSIH*YTVV*ISPTSCTRGQLTVKLTGNFIQIYHVNIT 8
           VI P   LH  V+L  +W+    +H  T     P SC R   T++++ +F++ YH N T
Sbjct: 125 VIPPNSVLHFDVLLVDIWNSEDQVHIQTY--FKPPSCPR---TIQVS-DFVR-YHYNGT 176



to top

>BCSA_SALTY (Q93IN2) Cellulose synthase catalytic subunit [UDP-forming] (EC|
           2.4.1.12)
          Length = 874

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 498 IMTPGQEGLLENSRGYIRLGQSQGFLALKCFWTVQRW 388
           ++ P    L E  +GY R G S    AL C WT+  W
Sbjct: 9   LIPPVSARLSERYQGYRRHGASPFSAALGCLWTILAW 45



to top

>BCSA_SALTI (Q8Z291) Cellulose synthase catalytic subunit [UDP-forming] (EC|
           2.4.1.12)
          Length = 874

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 498 IMTPGQEGLLENSRGYIRLGQSQGFLALKCFWTVQRW 388
           ++ P    L E  +GY R G S    AL C WT+  W
Sbjct: 9   LIPPVSARLSERYQGYRRHGASPFSAALGCLWTILAW 45



to top

>XDH_BOVIN (P80457) Xanthine dehydrogenase/oxidase [Includes: Xanthine|
           dehydrogenase (EC 1.17.1.4) (XD); Xanthine oxidase (EC
           1.17.3.2) (XO) (Xanthine oxidoreductase)]
          Length = 1331

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 274 QGLETWLHDGSI*YERCCSGHKHSPPVARDLR--HILILTPSLDSPEAF 414
           QG  T+  +G      CC G+ ++P    + +  H + L+PSL +PE F
Sbjct: 157 QGFRTFAKNGG-----CCGGNGNNPNCCMNQKKDHTVTLSPSLFNPEEF 200


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,459,594
Number of Sequences: 219361
Number of extensions: 1719618
Number of successful extensions: 3632
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3632
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top