Clone Information

BLAST Search Result

Clone Name	rbaal10b18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK103334.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	278	2e-71
2	gb\|AY575558.1\| Oryza sativa (indica cultivar-group) cultivar IR6...	270	5e-69
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	250	5e-63
4	gb\|AC145491.1\| Genomic sequence for Oryza sativa, Nipponbare str...	250	5e-63
5	gb\|AC118340.1\| Genomic sequence for Oryza sativa, Nipponbare str...	250	5e-63
6	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	250	5e-63
7	gb\|AY108040.1\| Zea mays PCO146975 mRNA sequence	232	1e-57
8	gb\|BT024047.1\| Zea mays clone EL01N0431H10 mRNA sequence	216	6e-53
9	dbj\|AP006378.1\| Lotus japonicus genomic DNA, chromosome 1, clone...	72	2e-09
10	gb\|AY110009.1\| Zea mays CL57181_1 mRNA sequence	58	4e-05
11	gb\|AY448016.1\|AY448010S7 Ipomoea trifida haplotype S1 self-incom...	56	1e-04
12	dbj\|AP006434.1\| Lotus japonicus genomic DNA, chromosome 4, clone...	50	0.009
13	ref\|NM_111456.3\| Arabidopsis thaliana beta-fructofuranosidase AT...	44	0.53
14	gb\|AC012393.5\|ATAC012393 Arabidopsis thaliana chromosome III BAC...	44	0.53
15	gb\|AC141113.5\| Medicago truncatula clone mth2-7h7, complete sequ...	44	0.53
16	gb\|AC158737.14\| Medicago truncatula clone mth2-154f20, complete ...	44	0.53
17	gb\|BT005695.1\| Arabidopsis thaliana clone U50005 putative alkali...	44	0.53
18	gb\|BT004140.1\| Arabidopsis thaliana clone RAFL15-37-K14 (R50005)...	44	0.53
19	emb\|AJ422050.1\|BVU422050 Beta vulgaris mRNA for neutral invertas...	44	0.53
20	dbj\|AB083685.1\| Nicotiana tabacum NtINV2 mRNA for invertase, par...	44	0.53
21	gb\|DQ487284.1\| Populus sp. UG-2006 neutral invertase 6 mRNA, par...	42	2.1
22	gb\|AY815233.1\| Schistosoma japonicum SJCHGC07891 protein mRNA, c...	42	2.1
23	emb\|CR383666.7\| Zebrafish DNA sequence from clone DKEY-30H2 in l...	42	2.1
24	gb\|AC115802.10\| Mus musculus, clone RP23-408J7, complete sequence	42	2.1
25	gb\|AF259696.1\| Ovis aries microsatellite MNS-22 sequence	42	2.1
26	emb\|CR381673.7\| Zebrafish DNA sequence from clone CH211-209J3 in...	42	2.1
27	emb\|BX511304.5\| Zebrafish DNA sequence from clone DKEYP-94G1 in ...	42	2.1
28	gb\|CP000082.1\| Psychrobacter arcticus 273-4, complete genome	40	8.3
29	gb\|AC122397.2\| Mus musculus BAC clone RP24-90D21 from chromosome...	40	8.3
30	gb\|AC124012.4\| Mus musculus BAC clone RP24-357P22 from chromosom...	40	8.3
31	gb\|AC122459.2\| Mus musculus BAC clone RP24-273F21 from chromosom...	40	8.3
32	emb\|AL117376.28\|HSDJ971B4 Human DNA sequence from clone RP5-971B...	40	8.3
33	emb\|AL845333.3\| Mouse DNA sequence from clone RP23-245E19 on chr...	40	8.3
34	gb\|AC016113.9\| Homo sapiens, clone RP11-26P22, complete sequence	40	8.3
35	gb\|AC090989.8\| Homo sapiens chromosome 18, clone RP11-265C19, co...	40	8.3
36	emb\|BX005407.5\| Zebrafish DNA sequence from clone CH211-222C22 i...	40	8.3
37	gb\|AF049880.1\|AF049880 Mus musculus TGFb inducible early protein...	40	8.3
38	emb\|BX465221.7\| Mouse DNA sequence from clone RP23-13E2 on chrom...	40	8.3
39	emb\|AJ937762.1\| Uncultured gamma proteobacterium fosmid clone b1...	40	8.3
40	dbj\|AP006410.1\| Lotus japonicus genomic DNA, chromosome 6, clone...	40	8.3
41	dbj\|AP004898.1\| Lotus japonicus genomic DNA, chromosome 3, clone...	40	8.3

>dbj|AK103334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125P15, full
            insert sequence
          Length = 2297

 Score =  278 bits (140), Expect = 2e-71
 Identities = 293/344 (85%)
 Strand = Plus / Minus

                                                                        
Query: 268  actacacaaggacttgagacctggctgcacgacgggagcatttgatacgagcgctgttgc 327
            |||||||||| || || ||||| || |||||||||||||||||| | || || || ||| 
Sbjct: 2016 actacacaagaacctgcgaccttgccgcacgacgggagcatttggttcgggcactcttgt 1957

                                                                        
Query: 328  tcaggccacaagcacagccctccagtagctcgagatcttcgtcacatattaatattgacg 387
            |||  |  || ||||| || ||||| |||||||||||||| ||||| || ||||| || |
Sbjct: 1956 tcacactgcatgcacacccttccagcagctcgagatcttcctcacaaatcaatatggatg 1897

                                                                        
Query: 388  ccatctctggacagtccagaagcattttagagctaagaaaccctgcgattgtccaagtct 447
            |||  ||||||||||| | ||||||||||||||||||  | ||||| || |||||||| |
Sbjct: 1896 ccaattctggacagtctaaaagcattttagagctaaggtatcctgcaatcgtccaagttt 1837

                                                                        
Query: 448  gatatagcctcgactgttttccaataaaccttcctgtcctggtgtcataatattctggcc 507
            |||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 1836 gatatagccttgactgcttcccaataaaccttcctgtccttgtgtcataatattctggcc 1777

                                                                        
Query: 508  acttgtcatctgagagcctcttttccacggcttcaacagctctccttgccaagtcaggcc 567
            ||||||| |||||||| ||||||||  || ||||||  |||| |  ||| |||||| |||
Sbjct: 1776 acttgtcctctgagagtctcttttctgcgacttcaatggctcgctgtgctaagtcacgcc 1717

                                                        
Query: 568  tacccatcttgatacaggctagggtgaactgccatagcaatgta 611
            |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1716 tacccatcttgatacaggctagagtgaactgccatagcaatgta 1673



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 40/46 (86%), Gaps = 4/46 (8%)
 Strand = Plus / Minus

                                                          
Query: 113  tatcgatggattaagggaccacaaacttgccaaaataaccggcata 158
            |||||||||||||    |||||||  ||||||||||||||||||||
Sbjct: 2162 tatcgatggatta----accacaagattgccaaaataaccggcata 2121

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>gb|AY575558.1| Oryza sativa (indica cultivar-group) cultivar IR64 neutral/alkaline
           invertase 1 mRNA, partial cds
          Length = 574

 Score =  270 bits (136), Expect = 5e-69
 Identities = 292/344 (84%)
 Strand = Plus / Minus

                                                                       
Query: 268 actacacaaggacttgagacctggctgcacgacgggagcatttgatacgagcgctgttgc 327
           |||||||||| || || ||||| || |||||||||||||||||| | || || || ||| 
Sbjct: 453 actacacaagaacctgcgaccttgccgcacgacgggagcatttggttcgggcactcttgt 394

                                                                       
Query: 328 tcaggccacaagcacagccctccagtagctcgagatcttcgtcacatattaatattgacg 387
           |||  |  || ||||| || ||||| |||||||||||||| ||||| || ||||| || |
Sbjct: 393 tcacactgcatgcacacccttccagcagctcgagatcttcctcacaaatcaatatggatg 334

                                                                       
Query: 388 ccatctctggacagtccagaagcattttagagctaagaaaccctgcgattgtccaagtct 447
           |||  ||||||||||| | ||||||||||||||||||  | ||||| || |||||||| |
Sbjct: 333 ccaattctggacagtctaaaagcattttagagctaaggtatcctgcaatcgtccaagttt 274

                                                                       
Query: 448 gatatagcctcgactgttttccaataaaccttcctgtcctggtgtcataatattctggcc 507
           |||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 273 gatatagccttgactgcttcccaataaaccttcctgtccttgtgtcataatattctggcc 214

                                                                       
Query: 508 acttgtcatctgagagcctcttttccacggcttcaacagctctccttgccaagtcaggcc 567
           ||||||| || ||||| ||||||||  || ||||||  |||| |  ||| |||||| |||
Sbjct: 213 acttgtcctcagagagtctcttttctgcgacttcaatggctcgctgtgctaagtcacgcc 154

                                                       
Query: 568 tacccatcttgatacaggctagggtgaactgccatagcaatgta 611
           |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 153 tacccatcttgatacaggctagagtgaactgccatagcaatgta 110

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  250 bits (126), Expect = 5e-63
 Identities = 279/330 (84%)
 Strand = Plus / Plus

                                                                            
Query: 268      actacacaaggacttgagacctggctgcacgacgggagcatttgatacgagcgctgttgc 327
                |||||||||| || || ||||| || |||||||||||||||||| | || || || ||| 
Sbjct: 11256749 actacacaagaacctgcgaccttgccgcacgacgggagcatttggttcgggcactcttgt 11256808

                                                                            
Query: 328      tcaggccacaagcacagccctccagtagctcgagatcttcgtcacatattaatattgacg 387
                |||  |  || ||||| || ||||| |||||||||||||| ||||| || ||||| || |
Sbjct: 11256809 tcacactgcatgcacacccttccagcagctcgagatcttcctcacaaatcaatatggatg 11256868

                                                                            
Query: 388      ccatctctggacagtccagaagcattttagagctaagaaaccctgcgattgtccaagtct 447
                |||  ||||||||||| | ||||||||||||||||||  | ||||| || |||||||| |
Sbjct: 11256869 ccaattctggacagtctaaaagcattttagagctaaggtatcctgcaatcgtccaagttt 11256928

                                                                            
Query: 448      gatatagcctcgactgttttccaataaaccttcctgtcctggtgtcataatattctggcc 507
                |||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 11256929 gatatagccttgactgcttcccaataaaccttcctgtccttgtgtcataatattctggcc 11256988

                                                                            
Query: 508      acttgtcatctgagagcctcttttccacggcttcaacagctctccttgccaagtcaggcc 567
                ||||||| |||||||| ||||||||  || ||||||  |||| |  ||| |||||| |||
Sbjct: 11256989 acttgtcctctgagagtctcttttctgcgacttcaatggctcgctgtgctaagtcacgcc 11257048

                                              
Query: 568      tacccatcttgatacaggctagggtgaact 597
                |||||||||||||||||||||| |||||||
Sbjct: 11257049 tacccatcttgatacaggctagagtgaact 11257078



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 40/46 (86%), Gaps = 4/46 (8%)
 Strand = Plus / Plus

                                                              
Query: 113      tatcgatggattaagggaccacaaacttgccaaaataaccggcata 158
                |||||||||||||    |||||||  ||||||||||||||||||||
Sbjct: 11256603 tatcgatggatta----accacaagattgccaaaataaccggcata 11256644

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>gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAb0085H08, from chromosome 3, complete sequence
          Length = 130656

 Score =  250 bits (126), Expect = 5e-63
 Identities = 279/330 (84%)
 Strand = Plus / Plus

                                                                         
Query: 268   actacacaaggacttgagacctggctgcacgacgggagcatttgatacgagcgctgttgc 327
             |||||||||| || || ||||| || |||||||||||||||||| | || || || ||| 
Sbjct: 35702 actacacaagaacctgcgaccttgccgcacgacgggagcatttggttcgggcactcttgt 35761

                                                                         
Query: 328   tcaggccacaagcacagccctccagtagctcgagatcttcgtcacatattaatattgacg 387
             |||  |  || ||||| || ||||| |||||||||||||| ||||| || ||||| || |
Sbjct: 35762 tcacactgcatgcacacccttccagcagctcgagatcttcctcacaaatcaatatggatg 35821

                                                                         
Query: 388   ccatctctggacagtccagaagcattttagagctaagaaaccctgcgattgtccaagtct 447
             |||  ||||||||||| | ||||||||||||||||||  | ||||| || |||||||| |
Sbjct: 35822 ccaattctggacagtctaaaagcattttagagctaaggtatcctgcaatcgtccaagttt 35881

                                                                         
Query: 448   gatatagcctcgactgttttccaataaaccttcctgtcctggtgtcataatattctggcc 507
             |||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 35882 gatatagccttgactgcttcccaataaaccttcctgtccttgtgtcataatattctggcc 35941

                                                                         
Query: 508   acttgtcatctgagagcctcttttccacggcttcaacagctctccttgccaagtcaggcc 567
             ||||||| |||||||| ||||||||  || ||||||  |||| |  ||| |||||| |||
Sbjct: 35942 acttgtcctctgagagtctcttttctgcgacttcaatggctcgctgtgctaagtcacgcc 36001

                                           
Query: 568   tacccatcttgatacaggctagggtgaact 597
             |||||||||||||||||||||| |||||||
Sbjct: 36002 tacccatcttgatacaggctagagtgaact 36031



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 40/46 (86%), Gaps = 4/46 (8%)
 Strand = Plus / Plus

                                                           
Query: 113   tatcgatggattaagggaccacaaacttgccaaaataaccggcata 158
             |||||||||||||    |||||||  ||||||||||||||||||||
Sbjct: 35556 tatcgatggatta----accacaagattgccaaaataaccggcata 35597

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>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0085H08, from chromosome 3, complete sequence
          Length = 126708

 Score =  250 bits (126), Expect = 5e-63
 Identities = 279/330 (84%)
 Strand = Plus / Minus

                                                                         
Query: 268   actacacaaggacttgagacctggctgcacgacgggagcatttgatacgagcgctgttgc 327
             |||||||||| || || ||||| || |||||||||||||||||| | || || || ||| 
Sbjct: 24299 actacacaagaacctgcgaccttgccgcacgacgggagcatttggttcgggcactcttgt 24240

                                                                         
Query: 328   tcaggccacaagcacagccctccagtagctcgagatcttcgtcacatattaatattgacg 387
             |||  |  || ||||| || ||||| |||||||||||||| ||||| || ||||| || |
Sbjct: 24239 tcacactgcatgcacacccttccagcagctcgagatcttcctcacaaatcaatatggatg 24180

                                                                         
Query: 388   ccatctctggacagtccagaagcattttagagctaagaaaccctgcgattgtccaagtct 447
             |||  ||||||||||| | ||||||||||||||||||  | ||||| || |||||||| |
Sbjct: 24179 ccaattctggacagtctaaaagcattttagagctaaggtatcctgcaatcgtccaagttt 24120

                                                                         
Query: 448   gatatagcctcgactgttttccaataaaccttcctgtcctggtgtcataatattctggcc 507
             |||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 24119 gatatagccttgactgcttcccaataaaccttcctgtccttgtgtcataatattctggcc 24060

                                                                         
Query: 508   acttgtcatctgagagcctcttttccacggcttcaacagctctccttgccaagtcaggcc 567
             ||||||| |||||||| ||||||||  || ||||||  |||| |  ||| |||||| |||
Sbjct: 24059 acttgtcctctgagagtctcttttctgcgacttcaatggctcgctgtgctaagtcacgcc 24000

                                           
Query: 568   tacccatcttgatacaggctagggtgaact 597
             |||||||||||||||||||||| |||||||
Sbjct: 23999 tacccatcttgatacaggctagagtgaact 23970



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 40/46 (86%), Gaps = 4/46 (8%)
 Strand = Plus / Minus

                                                           
Query: 113   tatcgatggattaagggaccacaaacttgccaaaataaccggcata 158
             |||||||||||||    |||||||  ||||||||||||||||||||
Sbjct: 24445 tatcgatggatta----accacaagattgccaaaataaccggcata 24404

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  250 bits (126), Expect = 5e-63
 Identities = 279/330 (84%)
 Strand = Plus / Plus

                                                                            
Query: 268      actacacaaggacttgagacctggctgcacgacgggagcatttgatacgagcgctgttgc 327
                |||||||||| || || ||||| || |||||||||||||||||| | || || || ||| 
Sbjct: 11253512 actacacaagaacctgcgaccttgccgcacgacgggagcatttggttcgggcactcttgt 11253571

                                                                            
Query: 328      tcaggccacaagcacagccctccagtagctcgagatcttcgtcacatattaatattgacg 387
                |||  |  || ||||| || ||||| |||||||||||||| ||||| || ||||| || |
Sbjct: 11253572 tcacactgcatgcacacccttccagcagctcgagatcttcctcacaaatcaatatggatg 11253631

                                                                            
Query: 388      ccatctctggacagtccagaagcattttagagctaagaaaccctgcgattgtccaagtct 447
                |||  ||||||||||| | ||||||||||||||||||  | ||||| || |||||||| |
Sbjct: 11253632 ccaattctggacagtctaaaagcattttagagctaaggtatcctgcaatcgtccaagttt 11253691

                                                                            
Query: 448      gatatagcctcgactgttttccaataaaccttcctgtcctggtgtcataatattctggcc 507
                |||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 11253692 gatatagccttgactgcttcccaataaaccttcctgtccttgtgtcataatattctggcc 11253751

                                                                            
Query: 508      acttgtcatctgagagcctcttttccacggcttcaacagctctccttgccaagtcaggcc 567
                ||||||| |||||||| ||||||||  || ||||||  |||| |  ||| |||||| |||
Sbjct: 11253752 acttgtcctctgagagtctcttttctgcgacttcaatggctcgctgtgctaagtcacgcc 11253811

                                              
Query: 568      tacccatcttgatacaggctagggtgaact 597
                |||||||||||||||||||||| |||||||
Sbjct: 11253812 tacccatcttgatacaggctagagtgaact 11253841



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 40/46 (86%), Gaps = 4/46 (8%)
 Strand = Plus / Plus

                                                              
Query: 113      tatcgatggattaagggaccacaaacttgccaaaataaccggcata 158
                |||||||||||||    |||||||  ||||||||||||||||||||
Sbjct: 11253366 tatcgatggatta----accacaagattgccaaaataaccggcata 11253407

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>gb|AY108040.1| Zea mays PCO146975 mRNA sequence
          Length = 1418

 Score =  232 bits (117), Expect = 1e-57
 Identities = 291/349 (83%)
 Strand = Plus / Minus

                                                                        
Query: 263  atggaactacacaaggacttgagacctggctgcacgacgggagcatttgatacgagcgct 322
            ||||||||||||||| || || ||| |||| |||||||| ||||||||| | |||||  |
Sbjct: 1063 atggaactacacaagaacctgcgacttggccgcacgacgtgagcatttggtgcgagcatt 1004

                                                                        
Query: 323  gttgctcaggccacaagcacagccctccagtagctcgagatcttcgtcacatattaatat 382
             ||  ||| ||  |||||||| || ||||| |||||||  ||||| || |||| || |||
Sbjct: 1003 cttattcaagctgcaagcacaaccttccagcagctcgaagtcttcatcgcatactagtat 944

                                                                        
Query: 383  tgacgccatctctggacagtccagaagcattttagagctaagaaaccctgcgattgtcca 442
             || |||||||| ||||||||||  | ||| |||||||||||| | || || ||  ||||
Sbjct: 943  ggatgccatctccggacagtccaataacatcttagagctaagatatccagcaatgctcca 884

                                                                        
Query: 443  agtctgatatagcctcgactgttttccaataaaccttcctgtcctggtgtcataatattc 502
            ||| |||||||||| ||| || || ||||| |||||||||||||||||||||||||| ||
Sbjct: 883  agtttgatatagccgcgattgcttcccaatgaaccttcctgtcctggtgtcataatactc 824

                                                                        
Query: 503  tggccacttgtcatctgagagcctcttttccacggcttcaacagctctccttgccaagtc 562
            ||||||||||||||||||||||||||||||  |  | ||||| || |||| |||||||||
Sbjct: 823  tggccacttgtcatctgagagcctcttttctgccacctcaactgccctccgtgccaagtc 764

                                                             
Query: 563  aggcctacccatcttgatacaggctagggtgaactgccatagcaatgta 611
            | ||||||||||||||||||| || | |||||||||||||| |||||||
Sbjct: 763  acgcctacccatcttgatacaagccaaggtgaactgccataacaatgta 715

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>gb|BT024047.1| Zea mays clone EL01N0431H10 mRNA sequence
          Length = 1449

 Score =  216 bits (109), Expect = 6e-53
 Identities = 289/349 (82%)
 Strand = Plus / Minus

                                                                        
Query: 263  atggaactacacaaggacttgagacctggctgcacgacgggagcatttgatacgagcgct 322
            ||||||||||||||| || ||  || |||| |||||||| ||||||||| | |||||  |
Sbjct: 1155 atggaactacacaagaacctgctacttggccgcacgacgtgagcatttggtgcgagcatt 1096

                                                                        
Query: 323  gttgctcaggccacaagcacagccctccagtagctcgagatcttcgtcacatattaatat 382
             ||  ||| ||   ||||||| || ||||| |||||||  ||||| || |||| || |||
Sbjct: 1095 cttattcaagctggaagcacaaccttccagcagctcgaagtcttcatcgcatactagtat 1036

                                                                        
Query: 383  tgacgccatctctggacagtccagaagcattttagagctaagaaaccctgcgattgtcca 442
             || |||||||| ||||||||||  | ||| |||||||||||| | || || ||  ||||
Sbjct: 1035 ggatgccatctccggacagtccaataacatcttagagctaagatatccagcaatgctcca 976

                                                                        
Query: 443  agtctgatatagcctcgactgttttccaataaaccttcctgtcctggtgtcataatattc 502
            ||| |||||||||| ||| || || ||||| |||||||||||||||||||||||||| ||
Sbjct: 975  agtttgatatagccgcgattgcttcccaatgaaccttcctgtcctggtgtcataatactc 916

                                                                        
Query: 503  tggccacttgtcatctgagagcctcttttccacggcttcaacagctctccttgccaagtc 562
            ||||||||||||||||||||||||||||||  |  | ||||| || |||| |||||||||
Sbjct: 915  tggccacttgtcatctgagagcctcttttctgccacctcaactgccctccgtgccaagtc 856

                                                             
Query: 563  aggcctacccatcttgatacaggctagggtgaactgccatagcaatgta 611
            | ||||||||||||||||||| || | |||||||||||||| |||||||
Sbjct: 855  acgcctacccatcttgatacaagccaaggtgaactgccataacaatgta 807

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>dbj|AP006378.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT44A10, TM0223,
             complete sequence
          Length = 101752

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                         
Query: 437   tgtccaagtctgatatagcctcgactgttttccaataaaccttcctgtcctggtgtcata 496
             |||||| || ||||||||||| | ||||||||||||||| |||||||| | |||||||||
Sbjct: 55614 tgtccatgtttgatatagcctggcctgttttccaataaatcttcctgtgcgggtgtcata 55555

                         
Query: 497   atattctggcca 508
              ||||| |||||
Sbjct: 55554 gtattcaggcca 55543

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>gb|AY110009.1| Zea mays CL57181_1 mRNA sequence
          Length = 948

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 488 ggtgtcataatattctggccacttgtcatctgagagcctct 528
           ||||||||| ||||||| |||||||||||||||||| ||||
Sbjct: 459 ggtgtcatagtattctgcccacttgtcatctgagagtctct 499

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>gb|AY448016.1|AY448010S7 Ipomoea trifida haplotype S1 self-incompatibility (S-) locus, contig
             SR7
          Length = 55205

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                         
Query: 487   tggtgtcataatattctggccacttgtc 514
             ||||||||||||||||||||||||||||
Sbjct: 52905 tggtgtcataatattctggccacttgtc 52878

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>dbj|AP006434.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT36O22, TM0333b,
             complete sequence
          Length = 74925

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                          
Query: 554   tgccaagtcaggcctacccatcttgatacaggctagggtgaactg 598
             |||||| |||||||| ||||||||||| |||||||  ||||||||
Sbjct: 71638 tgccaaatcaggccttcccatcttgatgcaggctaaagtgaactg 71682

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>ref|NM_111456.3| Arabidopsis thaliana beta-fructofuranosidase AT3G05820 mRNA, complete
            cds
          Length = 2054

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 435  attgtccaagtctgatatagcctcgactgttttccaat 472
            |||||||| ||||| || ||||| ||||||||||||||
Sbjct: 1760 attgtccatgtctggtaaagcctggactgttttccaat 1723

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>gb|AC012393.5|ATAC012393 Arabidopsis thaliana chromosome III BAC F10A16 genomic sequence,
             complete sequence
          Length = 87045

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 435   attgtccaagtctgatatagcctcgactgttttccaat 472
             |||||||| ||||| || ||||| ||||||||||||||
Sbjct: 38154 attgtccatgtctggtaaagcctggactgttttccaat 38191

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>gb|AC141113.5| Medicago truncatula clone mth2-7h7, complete sequence
          Length = 138094

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 489   gtgtcataatattctggccacttgtc 514
             |||||||||||||||||||| |||||
Sbjct: 23533 gtgtcataatattctggccatttgtc 23558

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>gb|AC158737.14| Medicago truncatula clone mth2-154f20, complete sequence
          Length = 114538

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 489    gtgtcataatattctggccacttgtc 514
              |||||||||||||||||||| |||||
Sbjct: 112410 gtgtcataatattctggccatttgtc 112435

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>gb|BT005695.1| Arabidopsis thaliana clone U50005 putative alkaline/neutral invertase
            (At3g05820) mRNA, complete cds
          Length = 1933

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 435  attgtccaagtctgatatagcctcgactgttttccaat 472
            |||||||| ||||| || ||||| ||||||||||||||
Sbjct: 1736 attgtccatgtctggtaaagcctggactgttttccaat 1699

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>gb|BT004140.1| Arabidopsis thaliana clone RAFL15-37-K14 (R50005) putative
            alkaline/neutral invertase (At3g05820) mRNA, complete cds
          Length = 2074

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 435  attgtccaagtctgatatagcctcgactgttttccaat 472
            |||||||| ||||| || ||||| ||||||||||||||
Sbjct: 1760 attgtccatgtctggtaaagcctggactgttttccaat 1723

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>emb|AJ422050.1|BVU422050 Beta vulgaris mRNA for neutral invertase (ninv gene)
          Length = 2490

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 459  gactgttttccaataaaccttcctgtcctggtgtcataatattctggcca 508
            |||||||| |||||||||||| ||  | | |||||||||||||| |||||
Sbjct: 1861 gactgtttaccaataaaccttgctccctttgtgtcataatattcaggcca 1812

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>dbj|AB083685.1| Nicotiana tabacum NtINV2 mRNA for invertase, partial cds
          Length = 354

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 489 gtgtcataatattctggccacttgtc 514
           |||||||||||||| |||||||||||
Sbjct: 154 gtgtcataatattccggccacttgtc 129

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>gb|DQ487284.1| Populus sp. UG-2006 neutral invertase 6 mRNA, partial cds
          Length = 888

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 570 cccatcttgatacaggctagggtgaactgccatagca 606
           |||||||||||||| ||||  ||||||||||| ||||
Sbjct: 801 cccatcttgatacaagctaatgtgaactgccacagca 765

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>gb|AY815233.1| Schistosoma japonicum SJCHGC07891 protein mRNA, complete cds
          Length = 1076

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 15 tttacatgatatatctgtata 35
          |||||||||||||||||||||
Sbjct: 81 tttacatgatatatctgtata 61

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>emb|CR383666.7| Zebrafish DNA sequence from clone DKEY-30H2 in linkage group 2, complete
              sequence
          Length = 144370

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 334    cacaagcacagccctccagta 354
              |||||||||||||||||||||
Sbjct: 109166 cacaagcacagccctccagta 109146

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>gb|AC115802.10| Mus musculus, clone RP23-408J7, complete sequence
          Length = 185710

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 24     tatatctgtataaaattgcca 44
              |||||||||||||||||||||
Sbjct: 137101 tatatctgtataaaattgcca 137121

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>gb|AF259696.1| Ovis aries microsatellite MNS-22 sequence
          Length = 682

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 11  aatatttacatgatatatctgtata 35
           |||||||||||||||||||| ||||
Sbjct: 201 aatatttacatgatatatctatata 225

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>emb|CR381673.7| Zebrafish DNA sequence from clone CH211-209J3 in linkage group 2,
             complete sequence
          Length = 209097

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 334   cacaagcacagccctccagta 354
             |||||||||||||||||||||
Sbjct: 46082 cacaagcacagccctccagta 46062

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>emb|BX511304.5| Zebrafish DNA sequence from clone DKEYP-94G1 in linkage group 2,
             complete sequence
          Length = 30749

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 334   cacaagcacagccctccagta 354
             |||||||||||||||||||||
Sbjct: 17752 cacaagcacagccctccagta 17732

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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 576   ttgatacaggctagggtgaactgc 599
             ||||||||||||||| ||||||||
Sbjct: 41340 ttgatacaggctaggatgaactgc 41363

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>gb|AC122397.2| Mus musculus BAC clone RP24-90D21 from chromosome 15, complete sequence
          Length = 181742

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 7     tggtaatatttacatgatatatctgtat 34
             ||||||||| |||||||||||| |||||
Sbjct: 16380 tggtaatatatacatgatatatatgtat 16353

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>gb|AC124012.4| Mus musculus BAC clone RP24-357P22 from chromosome 18, complete sequence
          Length = 193064

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     acttgacagttaattggcct 68
              ||||||||||||||||||||
Sbjct: 136354 acttgacagttaattggcct 136373

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>gb|AC122459.2| Mus musculus BAC clone RP24-273F21 from chromosome 15, complete sequence
          Length = 156807

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 7      tggtaatatttacatgatatatctgtat 34
              ||||||||| |||||||||||| |||||
Sbjct: 148512 tggtaatatatacatgatatatatgtat 148485

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>emb|AL117376.28|HSDJ971B4 Human DNA sequence from clone RP5-971B4 on chromosome 20 Contains the 3'
              end of the C20orf23 gene for a novel protein similar to
              KIF1 type and other kinesin-like proteins, complete
              sequence
          Length = 162213

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 274    caaggacttgagacctggct 293
              ||||||||||||||||||||
Sbjct: 132452 caaggacttgagacctggct 132433

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>emb|AL845333.3| Mouse DNA sequence from clone RP23-245E19 on chromosome 4 Contains
            part of the Ptprd gene for receptor type protein tyrosine
            phosphatase D, complete sequence
          Length = 186256

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 13   tatttacatgatatatctgt 32
            ||||||||||||||||||||
Sbjct: 6884 tatttacatgatatatctgt 6903

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>gb|AC016113.9| Homo sapiens, clone RP11-26P22, complete sequence
          Length = 185419

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 544    cagctctccttgccaagtca 563
              ||||||||||||||||||||
Sbjct: 108142 cagctctccttgccaagtca 108123

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>gb|AC090989.8| Homo sapiens chromosome 18, clone RP11-265C19, complete sequence
          Length = 108799

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 325   tgctcaggccacaagcacag 344
             ||||||||||||||||||||
Sbjct: 62512 tgctcaggccacaagcacag 62493

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>emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 in linkage group 5,
             complete sequence
          Length = 209796

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    tatatctgtataaaattgcc 43
             ||||||||||||||||||||
Sbjct: 66727 tatatctgtataaaattgcc 66708

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>gb|AF049880.1|AF049880 Mus musculus TGFb inducible early protein and hypothetical TGFb
            inducible early protein splice variant genes, complete
            cds
          Length = 7228

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 7    tggtaatatttacatgatatatctgtat 34
            ||||||||| |||||||||||| |||||
Sbjct: 5073 tggtaatatatacatgatatatatgtat 5100

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>emb|BX465221.7| Mouse DNA sequence from clone RP23-13E2 on chromosome X, complete
            sequence
          Length = 26830

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 12   atatttacatgatatatctgtata 35
            ||||||||||||||||| ||||||
Sbjct: 4434 atatttacatgatatatttgtata 4457

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>emb|AJ937762.1| Uncultured gamma proteobacterium fosmid clone b1bcf1.1.c04
          Length = 38209

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 268   actacacaaggacttgagacctgg 291
             |||||||||||| |||||||||||
Sbjct: 37568 actacacaaggagttgagacctgg 37545

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>dbj|AP006410.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT29C05, TM0301a,
             complete sequence
          Length = 28124

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     tggtaatatttacatgatat 26
             ||||||||||||||||||||
Sbjct: 13526 tggtaatatttacatgatat 13507

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>dbj|AP004898.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT01P23, TM0047b,
             complete sequence
          Length = 69411

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     tggtaatatttacatgatat 26
             ||||||||||||||||||||
Sbjct: 30420 tggtaatatttacatgatat 30439


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,822,911
Number of Sequences: 3902068
Number of extensions: 4822911
Number of successful extensions: 87825
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87663
Number of HSP's gapped (non-prelim): 160
length of query: 611
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 588
effective length of database: 17,143,297,704
effective search space: 10080259049952
effective search space used: 10080259049952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result