ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal10b06 |
|---|---|
| Clone Library Name | barley_pub |
>WDR47_HUMAN (O94967) WD-repeat protein 47| Length = 919 Score = 35.4 bits (80), Expect = 0.12 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%) Frame = -3 Query: 539 TERRAKST--IPWLWESSCSARAVATHVIIAPPVGGSPG 429 T R ST IP+L ES C ++ + H +I PP+G SPG Sbjct: 542 TPRNPGSTNHIPFLEESPCGSQISSEHSVIKPPLGDSPG 580
>AIPL1_HUMAN (Q9NZN9) Aryl-hydrocarbon-interacting protein-like 1| Length = 384 Score = 32.7 bits (73), Expect = 0.78 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Frame = -1 Query: 559 LGKRVPERREEQ-----NLLYPGYGNPPVQPGLWPLMSSSHRPLGEAPVMPS 419 L R+ E++EE+ N+L G PP +P P SS P E P PS Sbjct: 308 LENRMAEKQEEERLRCRNMLSQGATQPPAEPPTEPPAQSSTEPPAEPPTAPS 359
>Y1647_SYNY3 (P74369) Hypothetical UPF0014 membrane protein slr1647| Length = 259 Score = 32.3 bits (72), Expect = 1.0 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Frame = -3 Query: 551 ACSRTERRAKSTIPWLWESSCSARAV----ATHVIIAPPVGGSPGHAILATGVHA*QPCH 384 A +R R+KS WLW S ++ A+ A VII PP SP + I TG+ Q Sbjct: 83 ARNRINPRSKSLFGWLWLSLGASTAISLGYALVVIIQPPQWYSPQYLIPLTGMILGQTM- 141 Query: 383 HAASCCGGR 357 ++AS G R Sbjct: 142 NSASLAGER 150
>AIPL1_PANPA (Q95MN9) Aryl-hydrocarbon-interacting protein-like 1| Length = 384 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Frame = -1 Query: 559 LGKRVPERREEQ-----NLLYPGYGNPPVQPGLWPLMSSSHRPLGEAPVMPS 419 L R+ E++EE+ N+L G PP +P P SS P E P PS Sbjct: 308 LENRMAEKQEEERLRCRNMLSQGATQPPAEPPTEPPAQSSTEPPAEPPPAPS 359
>TEAD1_HUMAN (P28347) Transcriptional enhancer factor TEF-1 (TEA domain family| member 1) (TEAD-1) (Protein GT-IIC) (Transcription factor 13) (NTEF-1) Length = 426 Score = 30.0 bits (66), Expect = 5.0 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Frame = -1 Query: 511 PGYGNP--PVQPGLWPLMSSSHRPLGEAPVMPSWQQAYMLDSHAT 383 PG P P PG WP M + +P V P QQAY + T Sbjct: 143 PGIPRPTFPGAPGFWPGMIQTGQPGSSQDVKPFVQQAYPIQPAVT 187
>ITPK1_HUMAN (Q13572) Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134)| (Inositol-triphosphate 5/6-kinase) (EC 2.7.1.-) (Inositol 1,3,4-trisphosphate 5/6-kinase) Length = 414 Score = 30.0 bits (66), Expect = 5.0 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 3/70 (4%) Frame = -3 Query: 461 IIAPPVGGSPGHAILATGVHA*QPCHHAASCCG---GRRIPWLFSVRAVPSAAQPHGEPV 291 ++A P GG G + C + CCG G+ PW A +A PH Sbjct: 341 LLAEPAGGLVGE----------RTCSASPGCCGSMMGQDAPWKAEADAGGTAKLPHQRLG 390 Query: 290 AGAGAHPAGQ 261 AG P+ Q Sbjct: 391 CNAGVSPSFQ 400
>TEAD1_MOUSE (P30051) Transcriptional enhancer factor TEF-1 (TEA domain family| member 1) (TEAD-1) (Protein GT-IIC) (Transcription factor 13) (NTEF-1) Length = 426 Score = 29.6 bits (65), Expect = 6.6 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Frame = -1 Query: 511 PGYGNP--PVQPGLWPLMSSSHRPLGEAPVMPSWQQAYMLDSHAT 383 PG P P PG WP M + +P V P QQAY + T Sbjct: 143 PGIPRPTFPGGPGFWPGMIQTGQPGSSQDVKPFVQQAYPIQPAVT 187
>NOP14_SCHPO (O43051) Probable nucleolar complex protein 14| Length = 827 Score = 29.6 bits (65), Expect = 6.6 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 472 PLMSSSHRPLGEAPVMPSWQQAYMLD 395 PL SHRPLG +P +++ Y LD Sbjct: 731 PLALQSHRPLGITSQVPKFEEGYSLD 756
>LRP3_RAT (O88204) Low-density lipoprotein receptor-related protein 3| precursor (rLRp105) Length = 770 Score = 29.6 bits (65), Expect = 6.6 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 8/39 (20%) Frame = +1 Query: 319 EGTARTEKSQGILLPPQQLAAWWH--------GCQACTP 411 EG + QG PQ+ WWH GC AC P Sbjct: 380 EGDDGSTGEQGCFSEPQRCDGWWHCASGRDEQGCPACPP 418
>EMBP1_WHEAT (P25032) DNA-binding protein EMBP-1 (Histone promoter-binding| protein 1a(1)) (HBP-1a(1)) Length = 354 Score = 29.3 bits (64), Expect = 8.6 Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Frame = -3 Query: 452 PPV--GGSPG--HAILATGVHA*QPCHHAASCCGGRRIPWLFSVRAVPSAAQPHGEPVAG 285 PP GG+P HA A +HA AAS G W +P AQ HG AG Sbjct: 14 PPAAGGGTPAQAHAEWAASMHAYYAA--AASAAGHPYAAW-----PLPPQAQQHGLVAAG 66 Query: 284 AGA 276 AGA Sbjct: 67 AGA 69
>GALR3_MOUSE (O88853) Galanin receptor type 3 (GAL3-R) (GALR3)| Length = 370 Score = 29.3 bits (64), Expect = 8.6 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 11/61 (18%) Frame = -2 Query: 477 CGHSCH-------HRTARWGKPRSC----HPGNRRTCLTAMPPRCQLLRGEEDSLALLRS 331 CGH H HR R +P S +PG+ R +M PR LRG E L L Sbjct: 308 CGHRRHRHHHHRLHRALRRVQPASSGPAGYPGDARPRGWSMEPRGDALRGGETRLTLSAR 367 Query: 330 G 328 G Sbjct: 368 G 368
>M3K4_HUMAN (Q9Y6R4) Mitogen-activated protein kinase kinase kinase 4 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 4) (MEK kinase 4) (MEKK 4) (MAP three kinase 1) Length = 1607 Score = 29.3 bits (64), Expect = 8.6 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -3 Query: 341 FSVRAVPSAAQPHGEPVAGAGAHPA 267 FS R++PS A+ HG P A A A A Sbjct: 1174 FSTRSMPSDARSHGSPAAAAAAAAA 1198 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,515,957 Number of Sequences: 219361 Number of extensions: 1459120 Number of successful extensions: 4503 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4262 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4497 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
