>RL38_ARATH (O22860) 60S ribosomal protein L38|
          Length = 69

 Score =  127 bits (319), Expect = 6e-30
 Identities = 61/69 (88%), Positives = 67/69 (97%)
 Frame = -2

Query: 385 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSL 206
           MPKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSRYLYTLCVFD +KA+KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 205 PPGLSVQEV 179
           PPGLSVQ++
Sbjct: 61  PPGLSVQDL 69

>RL38_LYCES (P46291) 60S ribosomal protein L38|
          Length = 69

 Score =  120 bits (300), Expect = 1e-27
 Identities = 57/69 (82%), Positives = 65/69 (94%)
 Frame = -2

Query: 385 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSL 206
           MPKQIHEIKDFLLTARRKDAR+V+IK+ KD VKFKVRCS+YLYTLCV D +KA+KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 205 PPGLSVQEV 179
           PPGLSVQ++
Sbjct: 61  PPGLSVQDL 69

>RL38_RAT (P63174) 60S ribosomal protein L38|
          Length = 69

 Score =  107 bits (267), Expect = 7e-24
 Identities = 51/68 (75%), Positives = 61/68 (89%)
 Frame = -2

Query: 382 PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLP 203
           P++I EIKDFLLTARRKDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSLP
Sbjct: 1   PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 60

Query: 202 PGLSVQEV 179
           PGL+V+E+
Sbjct: 61  PGLAVKEL 68

>RL38_HUMAN (P63173) 60S ribosomal protein L38|
          Length = 69

 Score =  107 bits (267), Expect = 7e-24
 Identities = 51/68 (75%), Positives = 61/68 (89%)
 Frame = -2

Query: 382 PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLP 203
           P++I EIKDFLLTARRKDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSLP
Sbjct: 1   PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 60

Query: 202 PGLSVQEV 179
           PGL+V+E+
Sbjct: 61  PGLAVKEL 68

>RL38_MACFA (Q8HXB9) Ribosomal protein L38|
          Length = 69

 Score =  107 bits (266), Expect = 9e-24
 Identities = 51/67 (76%), Positives = 60/67 (89%)
 Frame = -2

Query: 382 PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLP 203
           P++I EIKDFLLTARRKDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSLP
Sbjct: 1   PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 60

Query: 202 PGLSVQE 182
           PGL+V+E
Sbjct: 61  PGLAVKE 67

>RL38_MOUSE (Q9JJI8) 60S ribosomal protein L38|
          Length = 69

 Score =  106 bits (264), Expect = 1e-23
 Identities = 50/68 (73%), Positives = 61/68 (89%)
 Frame = -2

Query: 382 PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLP 203
           P++I EIKDFLLTARRKDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSLP
Sbjct: 1   PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 60

Query: 202 PGLSVQEV 179
           PGL+V+++
Sbjct: 61  PGLAVKDL 68

>RL38_CAEEL (O17570) 60S ribosomal protein L38|
          Length = 70

 Score = 99.0 bits (245), Expect = 2e-21
 Identities = 47/69 (68%), Positives = 57/69 (82%)
 Frame = -2

Query: 385 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSL 206
           MPK+I EIKDFL+ ARRKDA+SV+IK+  +  KFKVRC+ YLYTL V D DKA KLKQSL
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60

Query: 205 PPGLSVQEV 179
           PPG+ V+E+
Sbjct: 61  PPGIQVKEL 69

>RL38_OSTOS (O61570) 60S ribosomal protein L38|
          Length = 70

 Score = 97.1 bits (240), Expect = 9e-21
 Identities = 49/69 (71%), Positives = 56/69 (81%)
 Frame = -2

Query: 385 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSL 206
           MPKQI EIKDFL+ ARRKDA+ V+IK+    VKFKVRCSRYL+TL V D DKA KLKQSL
Sbjct: 1   MPKQITEIKDFLVLARRKDAKIVKIKKNSLNVKFKVRCSRYLFTLVVNDKDKAEKLKQSL 60

Query: 205 PPGLSVQEV 179
           PPG+ V E+
Sbjct: 61  PPGIQVIEL 69

>RL38A_SCHPO (Q9USR7) 60S ribosomal protein L38-1|
          Length = 74

 Score = 88.6 bits (218), Expect = 3e-18
 Identities = 47/70 (67%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
 Frame = -2

Query: 385 MPKQIHEIKDFLLTARRKDARSVRIKR-TKDAVKFKVRCSRYLYTLCVFDADKANKLKQS 209
           MP+QI +IK FL  ARRKDA S RIK+ T   VKFK+RCS+YLYTL V DA KA KL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 208 LPPGLSVQEV 179
           LPP L+V EV
Sbjct: 61  LPPDLTVTEV 70

>RL38B_SCHPO (Q09900) 60S ribosomal protein L38-2|
          Length = 74

 Score = 84.7 bits (208), Expect = 5e-17
 Identities = 44/70 (62%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
 Frame = -2

Query: 385 MPKQIHEIKDFLLTARRKDARSVRIKRTKD-AVKFKVRCSRYLYTLCVFDADKANKLKQS 209
           MP+Q+ +IK FL  A R DA S R+K+ ++ AVKFK+RCSRYLYTL V DA KA KL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 208 LPPGLSVQEV 179
           LPP L+V EV
Sbjct: 61  LPPALTVTEV 70

>RL38_NEUCR (Q9C2B9) 60S ribosomal protein L38|
          Length = 80

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 39/71 (54%), Positives = 52/71 (73%), Gaps = 2/71 (2%)
 Frame = -2

Query: 385 MPKQIHEIKDFLLTARRKDARSVRIKRTK--DAVKFKVRCSRYLYTLCVFDADKANKLKQ 212
           MP++I +IK F+   RRKDA + RIK+ K    +KFKVRC +YLYTL + D+DKA KLK 
Sbjct: 1   MPQEIGDIKKFIEICRRKDASAARIKKNKATQQIKFKVRCQKYLYTLVLKDSDKAEKLKA 60

Query: 211 SLPPGLSVQEV 179
           SLPP L++ +V
Sbjct: 61  SLPPSLTIADV 71

>RL38_YEAST (P49167) 60S ribosomal protein L38|
          Length = 78

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 34/78 (43%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
 Frame = -2

Query: 385 MPKQIHEIKDFLLTARRKDARSVRIKRTKDA---------VKFKVRCSRYLYTLCVFDAD 233
           M ++I +IK FL   RR D ++  +K  K            KFKVR S  LYTL + DA 
Sbjct: 1   MAREITDIKQFLELTRRADVKTATVKINKKLNKAGKPFRQTKFKVRGSSSLYTLVINDAG 60

Query: 232 KANKLKQSLPPGLSVQEV 179
           KA KL QSLPP L V  +
Sbjct: 61  KAKKLIQSLPPTLKVNRL 78

>RL38_AERPE (Q9YFR9) 50S ribosomal protein L38E|
          Length = 67

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 24/58 (41%), Positives = 31/58 (53%)
 Frame = -2

Query: 385 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQ 212
           MP ++    +F+    R  A   R+KR KD VK K R  RYLYTL V    +A  L+Q
Sbjct: 1   MPVELKSFDEFVKVVER--AVECRVKRGKDVVKIKARTKRYLYTLKVPPEKEAEVLEQ 56

>IPNS_EMENI (P05326) Isopenicillin N synthetase (EC 1.21.3.1) (IPNS)|
           (Isopenicillin N synthase)
          Length = 331

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 245 DAERVEVPGAANLELDGVLGPLDPHRPRVLPARRQQEVLDLVDLLRHG 388
           +AER  +P   NL  D V+ P DP  P     +  +E L   D L++G
Sbjct: 276 NAERQSLPFFVNLGYDSVIDPFDPREPN---GKSDREPLSYGDYLQNG 320

>TLR9_BOVIN (Q5I2M5) Toll-like receptor 9 precursor (CD289 antigen)|
          Length = 1029

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 211 SLPPGLSVQEV*ASSQSMPFLVAGMF 134
           SLPPG+ +Q++  SS S+ F++ G F
Sbjct: 694 SLPPGIRLQKLDVSSNSIGFVIPGFF 719

>CSD2_ECOLI (P53513) Outer membrane usher protein cssD precursor (CS6 fimbria|
           usher protein)
          Length = 802

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 7   HKNPHRFNHIAPNITFQSWNIKTLLNGGKQGEPANSY*RTMDRTFPLLEKA 159
           +KN + +  ++PNI + SW ++ L    +  +      +T +R +  LEK+
Sbjct: 172 NKNRYDYISVSPNINYFSWRLRNLFEFNQNNDE-----KTWERNYTYLEKS 217

>PROF3_HUMAN (P60673) Profilin-3 (Profilin III)|
          Length = 137

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
 Frame = -1

Query: 407 RVCTVVHHAEA------DPRDQGLPADGAPEGRAVGADQEDQGRRQVQGSLLQVPLHAL 249
           R C +  H  A      D R +GL A     GRA  A     GRR V G +L   +H L
Sbjct: 70  RCCVIRDHLLAEGDGVLDARTKGLDARAVCVGRAPRALLVLMGRRGVHGGILNKTVHEL 128

>LE756_CAEEL (Q11184) Protein let-756 (Lethal protein 756)|
          Length = 425

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -1

Query: 335 EGRAVGADQEDQGRRQVQGSLLQVPLHALRLRCRQGQQAQAVPPTRFERP 186
           E R    +Q  + RRQ   SL +     LR R +Q QQ QA   TR+ RP
Sbjct: 292 EDRLRKEEQIREARRQELKSLRE---EELRRRYQQQQQQQASTQTRYNRP 338

>MPAH1_HOLLA (P43216) Major pollen allergen Hol l 1 precursor (Hol l I) (Hol l|
           1.0101 and 1.0102)
          Length = 265

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 129 G*NIPATRKGIDWLDAQTSWTLKPGG 206
           G NI AT  G +WLDA+++W  KP G
Sbjct: 32  GPNITATY-GDEWLDAKSTWYGKPTG 56

>SP4_HUMAN (Q02446) Transcription factor Sp4 (SPR-1)|
          Length = 784

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 314 DQEDQGRRQVQGSLLQVP-LHALRLRCRQGQQAQAVPPTRFERPGGLSIKPI 162
           +Q+DQ     Q  ++  P L  ++++  Q Q  QA+PP  F+   G +I+ I
Sbjct: 385 NQQDQSNSLQQVQIVGQPILQQIQIQQPQQQIIQAIPPQSFQLQSGQTIQTI 436

>CSD1_ECOLI (P53512) Outer membrane usher protein cssD precursor (CS6 fimbria|
           usher protein)
          Length = 819

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +1

Query: 7   HKNPHRFNHIAPNITFQSWNIKTLLNGGKQGEPANSY*RTMDRTFPLLEKA 159
           +KN + +  ++PNI + SW ++      +  +      +T +R +  LEK+
Sbjct: 181 NKNRYDYISVSPNINYFSWRLRNRFEFNQNNDK-----KTWERNYTYLEKS 226

>TLR9_SHEEP (Q5I2M4) Toll-like receptor 9 precursor (CD289 antigen)|
          Length = 1029

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 211 SLPPGLSVQEV*ASSQSMPFLVAGMF 134
           SLPPG  +Q++  SS S+ F+  G F
Sbjct: 694 SLPPGTRLQKLDVSSNSIGFVTPGFF 719

>RDGC_PSESM (Q87YA4) Recombination-associated protein rdgC|
          Length = 306

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 373 IHEIKDFLLTARRKDARSVRIKRTKDAVKFKV 278
           +H  +DFLL A RK+ R +     +DA+K KV
Sbjct: 57  VHISQDFLLIAARKEERILPGSVVRDALKEKV 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,159,236
Number of Sequences: 219361
Number of extensions: 1008059
Number of successful extensions: 2810
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2807
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)