>GON4L_HUMAN (Q3T8J9) GON-4-like protein (GON-4 homolog)|
          Length = 2241

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = -3

Query: 515  RPEMEARF---ARKRVKSPQRSCGEEGEPSRVQPNSSKKQPPKNGKVSVKASVRLTPEGK 345
            +P+ + R+   +R RVK+  R+C     PS +  + +  + P+ G      +    PEG+
Sbjct: 2070 KPDTQERWLPSSRARVKTRDRTCPVHESPSGIDTSETSPKAPRGGLAKDSGTQAKGPEGE 2129

Query: 344  RRRKSAQ 324
            ++ K+A+
Sbjct: 2130 QQPKAAE 2136

>H1E_STRPU (P19375) Histone H1, early embryonic|
          Length = 205

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = -3

Query: 518 RRPEMEARFARKRVKSPQRSCGEEGEPSRVQPNSSKKQPPKNGKVSVKASVRLTPEGKRR 339
           ++ + +A+   +R K+ ++ C EEGE +        K  PK  K  VK     T E K +
Sbjct: 103 KKEKEKAKLLAQREKAKEKGCSEEGETAEGSRPKKVKAAPKKAKKPVKK----TTEKKEK 158

Query: 338 RKS 330
           +K+
Sbjct: 159 KKT 161

>SH2P1_HUMAN (Q6PD62) SH2 domain-binding protein 1|
          Length = 1173

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = -3

Query: 527  GPNRRPEMEARFARKRVKSPQRSCGEEG---EPSRVQPNSSKKQPPKNGKVSVKASVRLT 357
            G  +  E E    RK+ K  +   GEEG   + +   P   K++PPK  K       RL 
Sbjct: 942  GSEQEGEDEEGGERKKKKRRRHPKGEEGSDDDETENGPKPKKRRPPKAEKKKAPKPERLP 1001

Query: 356  PEGKRRRKSAQLL 318
            P  K + KS  ++
Sbjct: 1002 PSMKGKIKSKAII 1014

>ORC1_CANAL (O74270) Origin recognition complex subunit 1|
          Length = 805

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -3

Query: 503 EARFARKRVKSPQRSCGEEGEPSRVQPNSSKKQPPKNGKVSVKASVRLTPEGKRR 339
           EA  A   ++S + +  +E E S V+ ++ KK   KN K+S ++    TP  KR+
Sbjct: 279 EAEDANSALESDEENISQESEDSEVEYSTKKKL--KNKKLSRRSKAAATPSPKRK 331

>T2FA_HUMAN (P35269) Transcription initiation factor IIF alpha subunit (EC|
           2.7.11.1) (TFIIF-alpha) (Transcription initiation factor
           RAP74) (General transcription factor IIF polypeptide 1
           74 kDa subunit protein)
          Length = 517

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -3

Query: 482 RVKSPQRSCGEEG--EPSRVQPNSSKKQPPKNGKVSVKASVRLTPEGKRRRKSA 327
           + K+PQ+  G +G  E S     S +++PP+  K   +     TP+ K+RRK +
Sbjct: 288 KAKAPQQEEGPKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDS 341

>UNC89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Uncoordinated protein|
            89)
          Length = 8081

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = -3

Query: 536  KLIGPNRRPEMEARFARKRVKSPQRSCGEEGEPSRVQPNSSKKQPPKNGKVSVKASVRLT 357
            K   P ++ +   +   + VKSP+    E+ E     P   +K P K+    VK+    T
Sbjct: 1700 KPASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSP---T 1756

Query: 356  PEGKRRRKSAQ--LLQPFNLESS*CK*MAD 273
             + K   KSA+     P   ESS  K MAD
Sbjct: 1757 KKEKSPEKSAEEKPKSPTKKESSPVK-MAD 1785

>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
 Frame = -3

Query: 536 KLIGPNRRPEMEARFA-RKRVKSPQ----------RSCGEEGEPSRVQPNSSKKQPPKNG 390
           ++ GP +RP +E     R+++K  +          RS    GEP + QP  +K Q  K  
Sbjct: 564 EIFGPLKRPIVEFSLEDRRKLKMKELRIQRSLQKMRSKPATGEPQKGQPEPAKDQQQKAA 623

Query: 389 KVSVKASVRLTPEGKRRRKS 330
           +   +   ++ PE KR+  S
Sbjct: 624 QHHTEEQSKVPPEQKRKAGS 643

>DNJ5_CAEEL (Q09446) DnaJ homolog dnj-5 (DnaJ domain protein 5)|
          Length = 915

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = -3

Query: 545 FHVKLIGPNRRPEMEARFARKRVKSPQRSCGEEGEPSRVQPNSSKKQPPKNGKVSVKASV 366
           +H K     R P ++  F+R    +      EE +P RV+ +S+      NG+V      
Sbjct: 454 YHEKKSANGRPPLIQKIFSRSSSPADDIIDTEEEDPHRVRSSSTHVHQNGNGQVKKDQRK 513

Query: 365 RLTPEGKRRRK 333
           R+    +RRRK
Sbjct: 514 RVAQVNQRRRK 524

>YD81_SCHPO (Q10146) Hypothetical protein C1F3.01 in chromosome I|
          Length = 777

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
 Frame = -3

Query: 602 DLNKGQSTNDLVCYTAVN------PFHVKLIGPNRRPEMEARFARKRVKSPQRSCGEEGE 441
           +LN  QST       ++N      P  ++ +G N++    ++   K   +P     E+ E
Sbjct: 620 ELNVKQSTVTEAANPSLNGEKKQEPIVIRDLGLNKQKRDSSKLNHKEPSNPIEERNEDIE 679

Query: 440 PSRVQPNSSKKQPPKNGKVSVKASVRLTPEGKRRRKSAQLLQ--PFNLES 297
           PS    + SKK+  K  K   K S +LT E +     + ++   PF+ ++
Sbjct: 680 PSEASTSVSKKRKQKKKK---KNSGKLTIEAEHVSNDSPIINEAPFDYKN 726

>DPOLA_ORYSA (O48653) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)|
          Length = 1534

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 473 SPQRSCGEEGEP-SRVQPNSSKKQPPKNGKVSVKASVRLTPEGKRRRKS 330
           S + S GE+G P  R QP    K+PP+    +   S      GK+R  S
Sbjct: 104 SDEGSDGEDGAPRKRKQPRPQSKRPPQQSAAAASLSAAAAMMGKQRLSS 152

>MDC1_MOUSE (Q5PSV9) Mediator of DNA damage checkpoint protein 1|
          Length = 1707

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -3

Query: 518  RRPEMEARFARKRVKSPQRSCGEEGEPSRVQPNSSKKQP 402
            R P  +AR  R  VK+P+ S     E   +QP +SKKQP
Sbjct: 1275 REPSSQARTRRSAVKTPEASVPTTPE---LQPFTSKKQP 1310

>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1846

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 512  PEMEARFARKRVKSPQRSCGEEGEPSRVQPNSSKKQPPKNG-KVSVKASVRLTP 354
            PE   R A  R K P     E GE SR Q NS ++ P + G +V    +  L P
Sbjct: 1551 PERRGRSAIGRTKEPPSRATETGE-SRGQDNSGRRGPQRRGARVPRSGTTELAP 1603

>POLS_CHIKS (Q8JUX5) Structural polyprotein (p130) [Contains: Capsid protein|
           (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3
           protein (Spike glycoprotein E3); E2 envelope
           glycoprotein (Spike glycoprotein E2); 6K protein; E1
           envelope glycoprotein (Spike g
          Length = 1248

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 14/64 (21%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = -3

Query: 560 TAVNPFHVKLIGPNRRPEMEARFARKRVK--SPQRSCGEEGEPSRVQPNSSKKQPPKNGK 387
           +AVN   ++ + P ++P    +  +++ K  +PQ +  ++ +P + +P   KK+P +  +
Sbjct: 46  SAVNKLTMRAV-PQQKPRKNRKNKKQKQKQQAPQNNTNQKKQPPKKKPAQKKKKPGRRER 104

Query: 386 VSVK 375
           + +K
Sbjct: 105 MCMK 108

>SH2P1_XENLA (Q4QR29) SH2 domain-binding protein 1|
          Length = 1157

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 488  RKRVKSPQRSCGEEGEPSRVQPNSSKKQPPKNGKVSVKASVRLTPEGKRRRKS 330
            +KR K PQ++ G + +  +  P S K+QP K  K +       + +GK + K+
Sbjct: 961  KKRRKRPQKAAGSDDDEEQT-PQSKKRQPKKKEKPAKLERTPPSMKGKIKSKA 1012

>SYI_FRATT (Q5NGD0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 935

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 489 CETCLHLWSTVGTNQFYMEWIDSCVAN 569
           CE C H  STVG N  Y +    CV N
Sbjct: 897 CERCWHRSSTVGDNPQYKDICSRCVEN 923

>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40|
          Length = 350

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = -3

Query: 527 GPNRRPEMEARFARKRVKSPQR-SCGEEGEPSRVQPNSS--KKQPPKNGKVSVKASVRLT 357
           G +RR     R  R+RV SP + S     +  R+ PN S  KK+ P+NG   V++ +   
Sbjct: 245 GRDRRGNDSPR-RRERVASPTKYSRSPNNKRERMSPNHSPFKKESPRNGVGEVESPIERR 303

Query: 356 PEGKRRRKSAQLLQP 312
              +   ++ Q+  P
Sbjct: 304 ERSRSSPENGQVESP 318

>PKHA6_MOUSE (Q7TQG1) Pleckstrin homology domain-containing family A member 6|
           (Phosphoinositol 3-phosphate-binding protein 3) (PEPP-3)
          Length = 1173

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -3

Query: 491 ARKRVKSPQRSCGEEGEPSRVQPNSSKKQPPKNGKVSVKASVRLTPEGKRR 339
           A+K V  P R   E+ +   + P+   +QPP N    ++   +   EG  R
Sbjct: 164 AQKSVPQPVRHSLEKPDSENIPPSKHHQQPPHNNLTKLEPEAKTRGEGDGR 214

>RIMB1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (RIM-binding protein 1) (RIM-BP1)
          Length = 1847

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 512  PEMEARFARKRVKSPQRSCGEEGEPSRVQPNSSKKQPPKNG 390
            PE   R A  R K P     E GE SR Q NS ++ P + G
Sbjct: 1552 PERRGRSAIGRTKEPPSRATETGE-SRGQDNSGRRGPQRRG 1591


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,869,597
Number of Sequences: 219361
Number of extensions: 1622325
Number of successful extensions: 4357
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4351
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)