| Clone Name | rbaal10a20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468533.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2511 Score = 555 bits (280), Expect = e-155 Identities = 532/616 (86%) Strand = Plus / Minus Query: 20 aatctttgacacaataaaatttaacgtcactgttccaaacaggagccaacccatctgcag 79 ||||||||||||| |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct: 1448 aatctttgacacagtaaaatttgacatcactattccaaacaggagccagtccatctgcag 1389 Query: 80 cttcaacggttattccaaagagcttatttgcaagactgaagaggccatccataaccttgg 139 || ||| | | ||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 1388 gctctacgctaacaccaaagagcctatttgcgagactgaagaggccatccataaccttgg 1329 Query: 140 gcagtgcaaagtaaggacgcagtccttcctcatcgatgtcatatttagattcccgcagtc 199 | ||||||||||||||||||| ||||||| | ||| ||||||||||||||||| |||| Sbjct: 1328 gtagtgcaaagtaaggacgcaaatcttcctcgttgatatcatatttagattcccggagtc 1269 Query: 200 gttcactccagaagttaagatcccagtgtgctagatcattggcttctgcagaaccagaat 259 |||||||||||||| | || |||||||| || || ||||||||||||| |||| |||| | Sbjct: 1268 gttcactccagaagcttaggtcccagtgagccaggtcattggcttctggagaagcagact 1209 Query: 260 ctttcacaaaggcttttagatcttccatatcttggacagcatgatcccaggaagcagcac 319 |||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 1208 ctttagcaaaggcttttagatcttccatatctttaacagcatgatcccaggaggcagcac 1149 Query: 320 ggattttctcaagaagctcctgcacccggtcaacagttgccattttccgagccatgctta 379 ||| ||||||||||||||| | || ||||||||||||||||||||| |||||||||||| Sbjct: 1148 ggagtttctcaagaagctcttctacacggtcaacagttgccattttctgagccatgctta 1089 Query: 380 cctcagcgaagttcttgtagccaagtagtttagccttctctagcctcaacttcagaatct 439 ||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct: 1088 cctcagcatagttcttgtagccgagtagcttagccttctccagcctcaactttagaattt 1029 Query: 440 gacttatgatatcagtgttatcaagatcaccgcttgatgcacgggttagataagcacgat 499 |||| ||||||| ||||||||||| || || || || ||||||||||| |||||||||| Sbjct: 1028 gactgatgatattggtgttatcaaggtcgccactagaggcacgggttaggtaagcacgat 969 Query: 500 atacttcttcacggagagccctgttcttagcatgttgcatgacagccgtgaagcttggtg 559 | ||||||||||| || || |||||| ||||| ||||| ||||| | ||||||| | Sbjct: 968 aaacttcttcacgaagtgctctgttccgtgcatgctgcataacagcaatatagcttggcg 909 Query: 560 cgtctagtgtgatcatccaaggtccattttcagctgaagcattttcatgtccctttgaaa 619 | || | |||||| ||||| ||||| |||||||| |||||||||||||| |||||||| Sbjct: 908 catccaatgtgatgatccatggtccgttttcagccgaagcattttcatgaccctttgacg 849 Query: 620 cagcagtctgtgctgc 635 | |||||||||||||| Sbjct: 848 cggcagtctgtgctgc 833
>dbj|AK103668.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135L17, full insert sequence Length = 1787 Score = 555 bits (280), Expect = e-155 Identities = 532/616 (86%) Strand = Plus / Minus Query: 20 aatctttgacacaataaaatttaacgtcactgttccaaacaggagccaacccatctgcag 79 ||||||||||||| |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct: 724 aatctttgacacagtaaaatttgacatcactattccaaacaggagccagtccatctgcag 665 Query: 80 cttcaacggttattccaaagagcttatttgcaagactgaagaggccatccataaccttgg 139 || ||| | | ||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 664 gctctacgctaacaccaaagagcctatttgcgagactgaagaggccatccataaccttgg 605 Query: 140 gcagtgcaaagtaaggacgcagtccttcctcatcgatgtcatatttagattcccgcagtc 199 | ||||||||||||||||||| ||||||| | ||| ||||||||||||||||| |||| Sbjct: 604 gtagtgcaaagtaaggacgcaaatcttcctcgttgatatcatatttagattcccggagtc 545 Query: 200 gttcactccagaagttaagatcccagtgtgctagatcattggcttctgcagaaccagaat 259 |||||||||||||| | || |||||||| || || ||||||||||||| |||| |||| | Sbjct: 544 gttcactccagaagcttaggtcccagtgagccaggtcattggcttctggagaagcagact 485 Query: 260 ctttcacaaaggcttttagatcttccatatcttggacagcatgatcccaggaagcagcac 319 |||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 484 ctttagcaaaggcttttagatcttccatatctttaacagcatgatcccaggaggcagcac 425 Query: 320 ggattttctcaagaagctcctgcacccggtcaacagttgccattttccgagccatgctta 379 ||| ||||||||||||||| | || ||||||||||||||||||||| |||||||||||| Sbjct: 424 ggagtttctcaagaagctcttctacacggtcaacagttgccattttctgagccatgctta 365 Query: 380 cctcagcgaagttcttgtagccaagtagtttagccttctctagcctcaacttcagaatct 439 ||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct: 364 cctcagcatagttcttgtagccgagtagcttagccttctccagcctcaactttagaattt 305 Query: 440 gacttatgatatcagtgttatcaagatcaccgcttgatgcacgggttagataagcacgat 499 |||| ||||||| ||||||||||| || || || || ||||||||||| |||||||||| Sbjct: 304 gactgatgatattggtgttatcaaggtcgccactagaggcacgggttaggtaagcacgat 245 Query: 500 atacttcttcacggagagccctgttcttagcatgttgcatgacagccgtgaagcttggtg 559 | ||||||||||| || || |||||| ||||| ||||| ||||| | ||||||| | Sbjct: 244 aaacttcttcacgaagtgctctgttccgtgcatgctgcataacagcaatatagcttggcg 185 Query: 560 cgtctagtgtgatcatccaaggtccattttcagctgaagcattttcatgtccctttgaaa 619 | || | |||||| ||||| ||||| |||||||| |||||||||||||| |||||||| Sbjct: 184 catccaatgtgatgatccatggtccgttttcagccgaagcattttcatgaccctttgacg 125 Query: 620 cagcagtctgtgctgc 635 | |||||||||||||| Sbjct: 124 cggcagtctgtgctgc 109
>dbj|AK070094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040J23, full insert sequence Length = 2478 Score = 555 bits (280), Expect = e-155 Identities = 532/616 (86%) Strand = Plus / Minus Query: 20 aatctttgacacaataaaatttaacgtcactgttccaaacaggagccaacccatctgcag 79 ||||||||||||| |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct: 1415 aatctttgacacagtaaaatttgacatcactattccaaacaggagccagtccatctgcag 1356 Query: 80 cttcaacggttattccaaagagcttatttgcaagactgaagaggccatccataaccttgg 139 || ||| | | ||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 1355 gctctacgctaacaccaaagagcctatttgcgagactgaagaggccatccataaccttgg 1296 Query: 140 gcagtgcaaagtaaggacgcagtccttcctcatcgatgtcatatttagattcccgcagtc 199 | ||||||||||||||||||| ||||||| | ||| ||||||||||||||||| |||| Sbjct: 1295 gtagtgcaaagtaaggacgcaaatcttcctcgttgatatcatatttagattcccggagtc 1236 Query: 200 gttcactccagaagttaagatcccagtgtgctagatcattggcttctgcagaaccagaat 259 |||||||||||||| | || |||||||| || || ||||||||||||| |||| |||| | Sbjct: 1235 gttcactccagaagcttaggtcccagtgagccaggtcattggcttctggagaagcagact 1176 Query: 260 ctttcacaaaggcttttagatcttccatatcttggacagcatgatcccaggaagcagcac 319 |||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 1175 ctttagcaaaggcttttagatcttccatatctttaacagcatgatcccaggaggcagcac 1116 Query: 320 ggattttctcaagaagctcctgcacccggtcaacagttgccattttccgagccatgctta 379 ||| ||||||||||||||| | || ||||||||||||||||||||| |||||||||||| Sbjct: 1115 ggagtttctcaagaagctcttctacacggtcaacagttgccattttctgagccatgctta 1056 Query: 380 cctcagcgaagttcttgtagccaagtagtttagccttctctagcctcaacttcagaatct 439 ||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct: 1055 cctcagcatagttcttgtagccgagtagcttagccttctccagcctcaactttagaattt 996 Query: 440 gacttatgatatcagtgttatcaagatcaccgcttgatgcacgggttagataagcacgat 499 |||| ||||||| ||||||||||| || || || || ||||||||||| |||||||||| Sbjct: 995 gactgatgatattggtgttatcaaggtcgccactagaggcacgggttaggtaagcacgat 936 Query: 500 atacttcttcacggagagccctgttcttagcatgttgcatgacagccgtgaagcttggtg 559 | ||||||||||| || || |||||| ||||| ||||| ||||| | ||||||| | Sbjct: 935 aaacttcttcacgaagtgctctgttccgtgcatgctgcataacagcaatatagcttggcg 876 Query: 560 cgtctagtgtgatcatccaaggtccattttcagctgaagcattttcatgtccctttgaaa 619 | || | |||||| ||||| ||||| |||||||| |||||||||||||| |||||||| Sbjct: 875 catccaatgtgatgatccatggtccgttttcagccgaagcattttcatgaccctttgacg 816 Query: 620 cagcagtctgtgctgc 635 | |||||||||||||| Sbjct: 815 cggcagtctgtgctgc 800
>dbj|AK065077.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001K16, full insert sequence Length = 2511 Score = 555 bits (280), Expect = e-155 Identities = 532/616 (86%) Strand = Plus / Minus Query: 20 aatctttgacacaataaaatttaacgtcactgttccaaacaggagccaacccatctgcag 79 ||||||||||||| |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct: 1448 aatctttgacacagtaaaatttgacatcactattccaaacaggagccagtccatctgcag 1389 Query: 80 cttcaacggttattccaaagagcttatttgcaagactgaagaggccatccataaccttgg 139 || ||| | | ||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 1388 gctctacgctaacaccaaagagcctatttgcgagactgaagaggccatccataaccttgg 1329 Query: 140 gcagtgcaaagtaaggacgcagtccttcctcatcgatgtcatatttagattcccgcagtc 199 | ||||||||||||||||||| ||||||| | ||| ||||||||||||||||| |||| Sbjct: 1328 gtagtgcaaagtaaggacgcaaatcttcctcgttgatatcatatttagattcccggagtc 1269 Query: 200 gttcactccagaagttaagatcccagtgtgctagatcattggcttctgcagaaccagaat 259 |||||||||||||| | || |||||||| || || ||||||||||||| |||| |||| | Sbjct: 1268 gttcactccagaagcttaggtcccagtgagccaggtcattggcttctggagaagcagact 1209 Query: 260 ctttcacaaaggcttttagatcttccatatcttggacagcatgatcccaggaagcagcac 319 |||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 1208 ctttagcaaaggcttttagatcttccatatctttaacagcatgatcccaggaggcagcac 1149 Query: 320 ggattttctcaagaagctcctgcacccggtcaacagttgccattttccgagccatgctta 379 ||| ||||||||||||||| | || ||||||||||||||||||||| |||||||||||| Sbjct: 1148 ggagtttctcaagaagctcttctacacggtcaacagttgccattttctgagccatgctta 1089 Query: 380 cctcagcgaagttcttgtagccaagtagtttagccttctctagcctcaacttcagaatct 439 ||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct: 1088 cctcagcatagttcttgtagccgagtagcttagccttctccagcctcaactttagaattt 1029 Query: 440 gacttatgatatcagtgttatcaagatcaccgcttgatgcacgggttagataagcacgat 499 |||| ||||||| ||||||||||| || || || || ||||||||||| |||||||||| Sbjct: 1028 gactgatgatattggtgttatcaaggtcgccactagaggcacgggttaggtaagcacgat 969 Query: 500 atacttcttcacggagagccctgttcttagcatgttgcatgacagccgtgaagcttggtg 559 | ||||||||||| || || |||||| ||||| ||||| ||||| | ||||||| | Sbjct: 968 aaacttcttcacgaagtgctctgttccgtgcatgctgcataacagcaatatagcttggcg 909 Query: 560 cgtctagtgtgatcatccaaggtccattttcagctgaagcattttcatgtccctttgaaa 619 | || | |||||| ||||| ||||| |||||||| |||||||||||||| |||||||| Sbjct: 908 catccaatgtgatgatccatggtccgttttcagccgaagcattttcatgaccctttgacg 849 Query: 620 cagcagtctgtgctgc 635 | |||||||||||||| Sbjct: 848 cggcagtctgtgctgc 833
>dbj|AK101576.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050K07, full insert sequence Length = 1690 Score = 230 bits (116), Expect = 4e-57 Identities = 212/244 (86%) Strand = Plus / Minus Query: 20 aatctttgacacaataaaatttaacgtcactgttccaaacaggagccaacccatctgcag 79 ||||||||||||| |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct: 627 aatctttgacacagtaaaatttgacatcactattccaaacaggagccagtccatctgcag 568 Query: 80 cttcaacggttattccaaagagcttatttgcaagactgaagaggccatccataaccttgg 139 || ||| | | ||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 567 gctctacgctaacaccaaagagcctatttgcgagactgaagaggccatccataaccttgg 508 Query: 140 gcagtgcaaagtaaggacgcagtccttcctcatcgatgtcatatttagattcccgcagtc 199 | ||||||||||||||||||| ||||||| | ||| ||||||||||||||||| |||| Sbjct: 507 gtagtgcaaagtaaggacgcaaatcttcctcgttgatatcatatttagattcccggagtc 448 Query: 200 gttcactccagaagttaagatcccagtgtgctagatcattggcttctgcagaaccagaat 259 |||||||||||||| | || |||||||| || || ||||||||||||| |||| |||| | Sbjct: 447 gttcactccagaagcttaggtcccagtgagccaggtcattggcttctggagaagcagact 388 Query: 260 cttt 263 |||| Sbjct: 387 cttt 384
>gb|AY105249.1| Zea mays PCO118287 mRNA sequence Length = 1328 Score = 212 bits (107), Expect = 1e-51 Identities = 209/243 (86%) Strand = Plus / Minus Query: 22 tctttgacacaataaaatttaacgtcactgttccaaacaggagccaacccatctgcagct 81 |||||||||||||||||||| || ||||||| ||| | ||||||| ||||||||||| | Sbjct: 250 tctttgacacaataaaatttgacatcactgtgccagatcggagccagcccatctgcaggt 191 Query: 82 tcaacggttattccaaagagcttatttgcaagactgaagaggccatccataaccttgggc 141 ||||| || | |||||| ||||||| ||| ||| ||||||||||||||||||||||||| Sbjct: 190 tcaacagtaactccaaaaagcttatgtgccagagtgaagaggccatccataaccttgggt 131 Query: 142 agtgcaaagtaaggacgcagtccttcctcatcgatgtcatatttagattcccgcagtcgt 201 |||||||| ||||| ||||| ||||||||| ||| ||||||||||| || | ||||||| Sbjct: 130 agtgcaaaataagggcgcagctcttcctcattgatatcatatttagactctctcagtcgt 71 Query: 202 tcactccagaagttaagatcccagtgtgctagatcattggcttctgcagaaccagaatct 261 |||||||||||| |||| |||||||| | | |||||| ||||| | ||||||||||||| Sbjct: 70 tcactccagaaggtaaggtcccagtgagtcaaatcattagcttcaggagaaccagaatct 11 Query: 262 ttc 264 ||| Sbjct: 10 ttc 8
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 165 bits (83), Expect = 2e-37 Identities = 197/235 (83%) Strand = Plus / Plus Query: 379 acctcagcgaagttcttgtagccaagtagtttagccttctctagcctcaacttcagaatc 438 |||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| ||||| Sbjct: 35704901 acctcagcatagttcttgtagccgagtagcttagccttctccagcctcaactttagaatt 35704960 Query: 439 tgacttatgatatcagtgttatcaagatcaccgcttgatgcacgggttagataagcacga 498 ||||| ||||||| ||||||||||| || || || || ||||||||||| ||||||||| Sbjct: 35704961 tgactgatgatattggtgttatcaaggtcgccactagaggcacgggttaggtaagcacga 35705020 Query: 499 tatacttcttcacggagagccctgttcttagcatgttgcatgacagccgtgaagcttggt 558 || ||||||||||| || || |||||| ||||| ||||| ||||| | ||||||| Sbjct: 35705021 taaacttcttcacgaagtgctctgttccgtgcatgctgcataacagcaatatagcttggc 35705080 Query: 559 gcgtctagtgtgatcatccaaggtccattttcagctgaagcattttcatgtccct 613 || || | |||||| ||||| ||||| |||||||| |||||||||||||| |||| Sbjct: 35705081 gcatccaatgtgatgatccatggtccgttttcagccgaagcattttcatgaccct 35705135 Score = 131 bits (66), Expect = 3e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 178 tcatatttagattcccgcagtcgttcactccagaagttaagatcccagtgtgctagatca 237 ||||||||||||||||| |||||||||||||||||| | || |||||||| || || ||| Sbjct: 35704446 tcatatttagattcccggagtcgttcactccagaagcttaggtcccagtgagccaggtca 35704505 Query: 238 ttggcttctgcagaaccagaatctttcacaaaggcttttagatcttccatatct 291 |||||||||| |||| |||| ||||| |||||||||||||||||||||||||| Sbjct: 35704506 ttggcttctggagaagcagactctttagcaaaggcttttagatcttccatatct 35704559 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Plus Query: 295 acagcatgatcccaggaagcagcacggattttctcaagaagctcctgcacccggtcaaca 354 ||||||||||||||||| |||||||||| ||||||||||||||| | || ||||||||| Sbjct: 35704735 acagcatgatcccaggaggcagcacggagtttctcaagaagctcttctacacggtcaaca 35704794 Query: 355 gttgccattttccgagccatgcttacct 382 |||||||||||| ||||||||||||||| Sbjct: 35704795 gttgccattttctgagccatgcttacct 35704822 Score = 109 bits (55), Expect = 1e-20 Identities = 64/67 (95%) Strand = Plus / Plus Query: 94 ccaaagagcttatttgcaagactgaagaggccatccataaccttgggcagtgcaaagtaa 153 ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 35704186 ccaaagagcctatttgcgagactgaagaggccatccataaccttgggtagtgcaaagtaa 35704245 Query: 154 ggacgca 160 ||||||| Sbjct: 35704246 ggacgca 35704252 Score = 48.1 bits (24), Expect = 0.036 Identities = 36/40 (90%) Strand = Plus / Plus Query: 20 aatctttgacacaataaaatttaacgtcactgttccaaac 59 ||||||||||||| |||||||| || ||||| |||||||| Sbjct: 35704033 aatctttgacacagtaaaatttgacatcactattccaaac 35704072
>dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_D06 Length = 102239 Score = 165 bits (83), Expect = 2e-37 Identities = 197/235 (83%) Strand = Plus / Plus Query: 379 acctcagcgaagttcttgtagccaagtagtttagccttctctagcctcaacttcagaatc 438 |||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| ||||| Sbjct: 65515 acctcagcatagttcttgtagccgagtagcttagccttctccagcctcaactttagaatt 65574 Query: 439 tgacttatgatatcagtgttatcaagatcaccgcttgatgcacgggttagataagcacga 498 ||||| ||||||| ||||||||||| || || || || ||||||||||| ||||||||| Sbjct: 65575 tgactgatgatattggtgttatcaaggtcgccactagaggcacgggttaggtaagcacga 65634 Query: 499 tatacttcttcacggagagccctgttcttagcatgttgcatgacagccgtgaagcttggt 558 || ||||||||||| || || |||||| ||||| ||||| ||||| | ||||||| Sbjct: 65635 taaacttcttcacgaagtgctctgttccgtgcatgctgcataacagcaatatagcttggc 65694 Query: 559 gcgtctagtgtgatcatccaaggtccattttcagctgaagcattttcatgtccct 613 || || | |||||| ||||| ||||| |||||||| |||||||||||||| |||| Sbjct: 65695 gcatccaatgtgatgatccatggtccgttttcagccgaagcattttcatgaccct 65749 Score = 131 bits (66), Expect = 3e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 178 tcatatttagattcccgcagtcgttcactccagaagttaagatcccagtgtgctagatca 237 ||||||||||||||||| |||||||||||||||||| | || |||||||| || || ||| Sbjct: 65060 tcatatttagattcccggagtcgttcactccagaagcttaggtcccagtgagccaggtca 65119 Query: 238 ttggcttctgcagaaccagaatctttcacaaaggcttttagatcttccatatct 291 |||||||||| |||| |||| ||||| |||||||||||||||||||||||||| Sbjct: 65120 ttggcttctggagaagcagactctttagcaaaggcttttagatcttccatatct 65173 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Plus Query: 295 acagcatgatcccaggaagcagcacggattttctcaagaagctcctgcacccggtcaaca 354 ||||||||||||||||| |||||||||| ||||||||||||||| | || ||||||||| Sbjct: 65349 acagcatgatcccaggaggcagcacggagtttctcaagaagctcttctacacggtcaaca 65408 Query: 355 gttgccattttccgagccatgcttacct 382 |||||||||||| ||||||||||||||| Sbjct: 65409 gttgccattttctgagccatgcttacct 65436 Score = 109 bits (55), Expect = 1e-20 Identities = 64/67 (95%) Strand = Plus / Plus Query: 94 ccaaagagcttatttgcaagactgaagaggccatccataaccttgggcagtgcaaagtaa 153 ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 64800 ccaaagagcctatttgcgagactgaagaggccatccataaccttgggtagtgcaaagtaa 64859 Query: 154 ggacgca 160 ||||||| Sbjct: 64860 ggacgca 64866 Score = 48.1 bits (24), Expect = 0.036 Identities = 36/40 (90%) Strand = Plus / Plus Query: 20 aatctttgacacaataaaatttaacgtcactgttccaaac 59 ||||||||||||| |||||||| || ||||| |||||||| Sbjct: 64647 aatctttgacacagtaaaatttgacatcactattccaaac 64686
>dbj|AK059746.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-H11, full insert sequence Length = 1140 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 20 aatctttgacacaataaaatttaacgtcactgttccaaacaggagccaacccatctgcag 79 ||||||||||||| |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct: 77 aatctttgacacagtaaaatttgacatcactattccaaacaggagccagtccatctgcag 18
>ref|NM_125960.2| Arabidopsis thaliana metalloendopeptidase AT5G65620 mRNA, complete cds Length = 2918 Score = 58.0 bits (29), Expect = 4e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 112 agactgaagaggccatccataaccttgggcagtgcaaagtaaggacgcagtccttcctca 171 |||||||| || |||||||||||||| ||||||| ||||| ||||| ||| |||||||| Sbjct: 1400 agactgaaaagtccatccataacctttggcagtgagaagtatggacgtagttcttcctca 1341 Query: 172 tcgatgtcatatttagattcccgcagtcgttcactccagaa 212 | || || ||||| ||||| || || | ||||||||||| Sbjct: 1340 ttaatatcgtatttggattcacgaagcctctcactccagaa 1300 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 349 tcaacagttgccattttccgagccatgcttacctcagcgaagttcttgtagccaagtagt 408 |||||||| ||||||||| ||||||||||||||||||| | || ||||| ||||| || Sbjct: 1163 tcaacagtagccattttcatagccatgcttacctcagcgtaattgttgtaaccaagaagc 1104 Query: 409 ttagc 413 ||||| Sbjct: 1103 ttagc 1099 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 490 taagcacgatatacttcttcacggagagccctgttcttagcatgttgcatgacag 544 |||||||| || ||||| ||||| ||||| | ||| ||||||||||||||||||| Sbjct: 1022 taagcacggtagacttcctcacgcagagcacggtttttagcatgttgcatgacag 968
>gb|AY142682.1| Arabidopsis thaliana putative oligopeptidase A (At5g65620) mRNA, complete cds Length = 2407 Score = 58.0 bits (29), Expect = 4e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 112 agactgaagaggccatccataaccttgggcagtgcaaagtaaggacgcagtccttcctca 171 |||||||| || |||||||||||||| ||||||| ||||| ||||| ||| |||||||| Sbjct: 1397 agactgaaaagtccatccataacctttggcagtgagaagtatggacgtagttcttcctca 1338 Query: 172 tcgatgtcatatttagattcccgcagtcgttcactccagaa 212 | || || ||||| ||||| || || | ||||||||||| Sbjct: 1337 ttaatatcgtatttggattcacgaagcctctcactccagaa 1297 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 349 tcaacagttgccattttccgagccatgcttacctcagcgaagttcttgtagccaagtagt 408 |||||||| ||||||||| ||||||||||||||||||| | || ||||| ||||| || Sbjct: 1160 tcaacagtagccattttcatagccatgcttacctcagcgtaattgttgtaaccaagaagc 1101 Query: 409 ttagc 413 ||||| Sbjct: 1100 ttagc 1096 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 490 taagcacgatatacttcttcacggagagccctgttcttagcatgttgcatgacag 544 |||||||| || ||||| ||||| ||||| | ||| ||||||||||||||||||| Sbjct: 1019 taagcacggtagacttcctcacgcagagcacggtttttagcatgttgcatgacag 965
>gb|AY045936.1| Arabidopsis thaliana putative oligopeptidase A (At5g65620) mRNA, complete cds Length = 2510 Score = 58.0 bits (29), Expect = 4e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 112 agactgaagaggccatccataaccttgggcagtgcaaagtaaggacgcagtccttcctca 171 |||||||| || |||||||||||||| ||||||| ||||| ||||| ||| |||||||| Sbjct: 1400 agactgaaaagtccatccataacctttggcagtgagaagtatggacgtagttcttcctca 1341 Query: 172 tcgatgtcatatttagattcccgcagtcgttcactccagaa 212 | || || ||||| ||||| || || | ||||||||||| Sbjct: 1340 ttaatatcgtatttggattcacgaagcctctcactccagaa 1300 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 349 tcaacagttgccattttccgagccatgcttacctcagcgaagttcttgtagccaagtagt 408 |||||||| ||||||||| ||||||||||||||||||| | || ||||| ||||| || Sbjct: 1163 tcaacagtagccattttcatagccatgcttacctcagcgtaattgttgtaaccaagaagc 1104 Query: 409 ttagc 413 ||||| Sbjct: 1103 ttagc 1099 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 490 taagcacgatatacttcttcacggagagccctgttcttagcatgttgcatgacag 544 |||||||| || ||||| ||||| ||||| | ||| ||||||||||||||||||| Sbjct: 1022 taagcacggtagacttcctcacgcagagcacggtttttagcatgttgcatgacag 968
>dbj|AB026639.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L13 Length = 63921 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 490 taagcacgatatacttcttcacggagagccctgttcttagcatgttgcatgacag 544 |||||||| || ||||| ||||| ||||| | ||| ||||||||||||||||||| Sbjct: 39711 taagcacggtagacttcctcacgcagagcacggtttttagcatgttgcatgacag 39657 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 112 agactgaagaggccatccataaccttgggcagtgcaaagtaaggacgcagtccttcct 169 |||||||| || |||||||||||||| ||||||| ||||| ||||| ||| |||||| Sbjct: 40401 agactgaaaagtccatccataacctttggcagtgagaagtatggacgtagttcttcct 40344 Score = 44.1 bits (22), Expect = 0.56 Identities = 31/34 (91%) Strand = Plus / Minus Query: 349 tcaacagttgccattttccgagccatgcttacct 382 |||||||| ||||||||| |||||||||||||| Sbjct: 39926 tcaacagtagccattttcatagccatgcttacct 39893
>ref|NM_121092.2| Arabidopsis thaliana metalloendopeptidase AT5G10540 mRNA, complete cds Length = 2825 Score = 48.1 bits (24), Expect = 0.036 Identities = 72/88 (81%) Strand = Plus / Minus Query: 125 catccataaccttgggcagtgcaaagtaaggacgcagtccttcctcatcgatgtcatatt 184 ||||||||||||| |||| || |||||||| |||||| ||||||||| || || |||| Sbjct: 1147 catccataacctttggcaatgagaagtaaggtcgcagttcttcctcattaatatcgtatt 1088 Query: 185 tagattcccgcagtcgttcactccagaa 212 | ||||| || || | ||||||||||| Sbjct: 1087 tggattcacgaagcctctcactccagaa 1060
>gb|AY050978.1| Arabidopsis thaliana putative oligopeptidase A (At5g10540) mRNA, complete cds Length = 2356 Score = 48.1 bits (24), Expect = 0.036 Identities = 72/88 (81%) Strand = Plus / Minus Query: 125 catccataaccttgggcagtgcaaagtaaggacgcagtccttcctcatcgatgtcatatt 184 ||||||||||||| |||| || |||||||| |||||| ||||||||| || || |||| Sbjct: 1137 catccataacctttggcaatgagaagtaaggtcgcagttcttcctcattaatatcgtatt 1078 Query: 185 tagattcccgcagtcgttcactccagaa 212 | ||||| || || | ||||||||||| Sbjct: 1077 tggattcacgaagcctctcactccagaa 1050
>emb|BX831351.1|CNS09YQG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS80ZC04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2208 Score = 48.1 bits (24), Expect = 0.036 Identities = 72/88 (81%) Strand = Plus / Minus Query: 125 catccataaccttgggcagtgcaaagtaaggacgcagtccttcctcatcgatgtcatatt 184 ||||||||||||| |||| || |||||||| |||||| ||||||||| || || |||| Sbjct: 1129 catccataacctttggcaatgagaagtaaggtcgcagttcttcctcattaatatcgtatt 1070 Query: 185 tagattcccgcagtcgttcactccagaa 212 | ||||| || || | ||||||||||| Sbjct: 1069 tggattcacgaagcctctcactccagaa 1042
>gb|BT002369.1| Arabidopsis thaliana clone U10217 putative oligopeptidase A (At5g10540) mRNA, complete cds Length = 2137 Score = 48.1 bits (24), Expect = 0.036 Identities = 72/88 (81%) Strand = Plus / Minus Query: 125 catccataaccttgggcagtgcaaagtaaggacgcagtccttcctcatcgatgtcatatt 184 ||||||||||||| |||| || |||||||| |||||| ||||||||| || || |||| Sbjct: 1120 catccataacctttggcaatgagaagtaaggtcgcagttcttcctcattaatatcgtatt 1061 Query: 185 tagattcccgcagtcgttcactccagaa 212 | ||||| || || | ||||||||||| Sbjct: 1060 tggattcacgaagcctctcactccagaa 1033
>gb|AC162871.2| Mus musculus chromosome 1, clone RP24-330F8, complete sequence Length = 126140 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 250 gaaccagaatctttcacaaagg 271 |||||||||||||||||||||| Sbjct: 63403 gaaccagaatctttcacaaagg 63424
>emb|AL592303.15| Mouse DNA sequence from clone RP23-238L2 on chromosome 1, complete sequence Length = 146855 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 250 gaaccagaatctttcacaaagg 271 |||||||||||||||||||||| Sbjct: 60084 gaaccagaatctttcacaaagg 60105
>emb|AL353995.1|ATF12B17 Arabidopsis thaliana DNA chromosome 5, BAC clone F12B17 (ESSA project) Length = 113053 Score = 42.1 bits (21), Expect = 2.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 125 catccataaccttgggcagtgcaaagtaaggacgcagtccttcct 169 ||||||||||||| |||| || |||||||| |||||| |||||| Sbjct: 34556 catccataacctttggcaatgagaagtaaggtcgcagttcttcct 34600
>ref|XM_480151.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1803 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 ctagcctcaacttcagaatc 438 |||||||||||||||||||| Sbjct: 719 ctagcctcaacttcagaatc 738
>ref|XM_713907.1| Candida albicans SC5314 putative transcription factor (CaO19_6038), mRNA Length = 1752 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 cttatgatatcagtgttatc 461 |||||||||||||||||||| Sbjct: 431 cttatgatatcagtgttatc 412
>ref|XM_713805.1| Candida albicans SC5314 putative transcription factor (CaO19_13459), mRNA Length = 1752 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 cttatgatatcagtgttatc 461 |||||||||||||||||||| Sbjct: 431 cttatgatatcagtgttatc 412
>gb|AC144932.6| Mus musculus BAC clone RP24-462H2 from chromosome 6, complete sequence Length = 140840 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 atgatatcagtgttatcaag 464 |||||||||||||||||||| Sbjct: 127454 atgatatcagtgttatcaag 127473
>gb|AC132148.3| Mus musculus BAC clone RP23-6N21 from chromosome 19, complete sequence Length = 191402 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 tggacagcatgatcccagga 311 |||||||||||||||||||| Sbjct: 110216 tggacagcatgatcccagga 110197
>gb|AC163724.4| Mus musculus BAC clone RP23-464C19 from chromosome 6, complete sequence Length = 177662 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 atgatatcagtgttatcaag 464 |||||||||||||||||||| Sbjct: 151055 atgatatcagtgttatcaag 151036
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tcccagtgtgctagatcatt 239 |||||||||||||||||||| Sbjct: 1068289 tcccagtgtgctagatcatt 1068270
>emb|AL591063.6| Human DNA sequence from clone RP11-535K1 on chromosome 6, complete sequence Length = 100426 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 actccagaagttaagatccc 223 |||||||||||||||||||| Sbjct: 21456 actccagaagttaagatccc 21475
>emb|AL353660.11| Human DNA sequence from clone RP11-459P23 on chromosome 13 Contains a novel gene, complete sequence Length = 129241 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 599 cattttcatgtccctttgaa 618 |||||||||||||||||||| Sbjct: 56279 cattttcatgtccctttgaa 56298
>emb|BX927397.10| Zebrafish DNA sequence from clone DKEY-87H7 in linkage group 7, complete sequence Length = 187890 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 597 agcattttcatgtccctttg 616 |||||||||||||||||||| Sbjct: 104349 agcattttcatgtccctttg 104330
>gb|AC141866.11| Medicago truncatula clone mth2-12p22, complete sequence Length = 126907 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 569 tgatcatccaaggtccattttcagctga 596 ||||||| |||||| ||||||||||||| Sbjct: 21531 tgatcattcaaggtacattttcagctga 21504
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 ctagcctcaacttcagaatc 438 |||||||||||||||||||| Sbjct: 3115731 ctagcctcaacttcagaatc 3115712
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1349_D05 Length = 174478 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 ctagcctcaacttcagaatc 438 |||||||||||||||||||| Sbjct: 166454 ctagcctcaacttcagaatc 166435
>dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1066_B03 Length = 115339 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 ctagcctcaacttcagaatc 438 |||||||||||||||||||| Sbjct: 75215 ctagcctcaacttcagaatc 75196 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,372,155 Number of Sequences: 3902068 Number of extensions: 5372155 Number of successful extensions: 90807 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90693 Number of HSP's gapped (non-prelim): 109 length of query: 636 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 613 effective length of database: 17,143,297,704 effective search space: 10508841492552 effective search space used: 10508841492552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)