ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF000939.1|AF000939 Hordeum vulgare aleurone ribonuclease mRN... 513 e-142
2ref|NM_193078.2| Oryza sativa (japonica cultivar-group), mRNA 113 5e-22
3ref|XM_506490.1| PREDICTED Oryza sativa (japonica cultivar-group... 113 5e-22
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
5dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
6dbj|AK104512.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 5e-22
7dbj|AK060320.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 5e-22
8gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 46 0.099
9ref|NM_193068.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.39
10ref|XM_597536.2| PREDICTED: Bos taurus similar to transcription ... 44 0.39
11dbj|AP004306.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
12emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 44 0.39
13emb|AL109622.10|HSDJ526F5 Human DNA sequence from clone RP3-526F... 42 1.5
14gb|AC084430.13| Homo sapiens 12p BAC RP11-96B19 (Roswell Park Ca... 42 1.5
15gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.5
16dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.5
17emb|CT737237.2| Pan troglodytes chromosome X clone CH251-44N04 m... 42 1.5
18ref|NM_190089.1| Oryza sativa (japonica cultivar-group), predic... 40 6.1
19gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 6.1
20gb|AC146523.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
21gb|AY658221.1| Synthetic construct Peudomonas aeruginosa clone F... 40 6.1
22gb|AC129567.8| Mus musculus chromosome 8, clone RP23-50L10, comp... 40 6.1
23ref|XM_814667.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.1
24ref|XM_815876.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.1
25gb|AC011287.4| Homo sapiens BAC clone RP11-22K15 from 7, complet... 40 6.1
26emb|AL590782.8| Human DNA sequence from clone CTD-2524E3 on chro... 40 6.1
27emb|AL391134.13| Human DNA sequence from clone RP11-245M24 on ch... 40 6.1
28gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 6.1
29gb|AC120035.6| Homo sapiens chromosome 8, clone RP11-1116K10, co... 40 6.1
30emb|AL136230.9| Human DNA sequence from clone RP1-95I21 on chrom... 40 6.1
31emb|AL133271.22| Human DNA sequence from clone RP11-155N17 on ch... 40 6.1
32emb|AL109618.1|HSJ775C13 Human DNA sequence from clone RP4-775C1... 40 6.1
33emb|BX640432.1| Bordetella parapertussis strain 12822, complete ... 40 6.1
34emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 40 6.1
35emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete ... 40 6.1
36gb|AC119741.3| Homo sapiens 3 BAC RP11-570O24 (Roswell Park Canc... 40 6.1
37gb|AC114770.4| Homo sapiens BAC clone RP11-422D16 from 4, comple... 40 6.1
38gb|AC093267.2| Homo sapiens chromosome 5 clone RP11-280F11, comp... 40 6.1
39gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 gen... 40 6.1
40gb|AC004659.1|AC004659 Homo sapiens chromosome 19, CIT-HSP-87m17... 40 6.1
41dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
42dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
44gb|AC093722.2| Homo sapiens BAC clone CTD-2012I17 from 4, comple... 40 6.1
45dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
46dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
47dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.1
48gb|AE004851.1| Pseudomonas aeruginosa PAO1, section 412 of 529 o... 40 6.1
49gb|AE004512.1| Pseudomonas aeruginosa PAO1, section 73 of 529 of... 40 6.1
50gb|AC129915.6| Homo sapiens chromosome 8, clone CTD-3212A4, comp... 40 6.1
51gb|AC124802.11| Homo sapiens chromosome 17, clone RP11-278N14, c... 40 6.1
52dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.1
53gb|AE005041.1| Halobacterium sp. NRC-1 section 72 of 170 of the ... 40 6.1
54dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.1
55gb|AC174827.3| Cavia porcellus clone CH234-477P24, complete sequ... 40 6.1
56dbj|AK070064.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
57dbj|AP003729.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.1
58gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.1
59gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
60gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
61dbj|AP003123.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.1 
>gb|AF000939.1|AF000939 Hordeum vulgare aleurone ribonuclease mRNA, partial cds
          Length = 739

 Score =  513 bits (259), Expect = e-142
 Identities = 259/259 (100%)
 Strand = Plus / Minus

                                                                       
Query: 196 gaaggccggcagctggaccctgtctttgcagttgccctgcatcggcagcgggcagtcgat 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaaggccggcagctggaccctgtctttgcagttgccctgcatcggcagcgggcagtcgat 680

                                                                       
Query: 256 gaggttctccccgtcgcggtcgatgcactggtacacctggaacagctgcgtctcgccgtc 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaggttctccccgtcgcggtcgatgcactggtacacctggaacagctgcgtctcgccgtc 620

                                                                       
Query: 316 gacgccacggttgcactccaggttcgccgtgaacccggtcccctccctgatggcgtccct 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gacgccacggttgcactccaggttcgccgtgaacccggtcccctccctgatggcgtccct 560

                                                                       
Query: 376 gatgctgctgaggaagtaggtctcggtgtcggacggcacgatcccggcgtcggcgaggat 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gatgctgctgaggaagtaggtctcggtgtcggacggcacgatcccggcgtcggcgaggat 500

                              
Query: 436 gctggtgaggttgtggcgg 454
           |||||||||||||||||||
Sbjct: 499 gctggtgaggttgtggcgg 481
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>ref|NM_193078.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1085

 Score =  113 bits (57), Expect = 5e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                       
Query: 227 ttgccctgcatcggcagcgggcagtcgatgaggttctccccgtcgcggtcgatgcactgg 286
           |||||||||||||| ||  ||||||||| ||| |||| ||||  |||||||| |||||||
Sbjct: 793 ttgccctgcatcgggagttggcagtcgacgagcttcttcccggagcggtcgacgcactgg 734

                                                                
Query: 287 tacacctggaacagctgcgtctcgccgtcgacgccacggttgcactccaggtt 339
           ||||||||||||||||||||||||||| || || | ||||||||||| |||||
Sbjct: 733 tacacctggaacagctgcgtctcgccggcggcgtcgcggttgcactcgaggtt 681
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>ref|XM_506490.1| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.133 mRNA
          Length = 1097

 Score =  113 bits (57), Expect = 5e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                       
Query: 227 ttgccctgcatcggcagcgggcagtcgatgaggttctccccgtcgcggtcgatgcactgg 286
           |||||||||||||| ||  ||||||||| ||| |||| ||||  |||||||| |||||||
Sbjct: 795 ttgccctgcatcgggagttggcagtcgacgagcttcttcccggagcggtcgacgcactgg 736

                                                                
Query: 287 tacacctggaacagctgcgtctcgccgtcgacgccacggttgcactccaggtt 339
           ||||||||||||||||||||||||||| || || | ||||||||||| |||||
Sbjct: 735 tacacctggaacagctgcgtctcgccggcggcgtcgcggttgcactcgaggtt 683
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  113 bits (57), Expect = 5e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                            
Query: 227      ttgccctgcatcggcagcgggcagtcgatgaggttctccccgtcgcggtcgatgcactgg 286
                |||||||||||||| ||  ||||||||| ||| |||| ||||  |||||||| |||||||
Sbjct: 26089039 ttgccctgcatcgggagttggcagtcgacgagcttcttcccggagcggtcgacgcactgg 26088980

                                                                     
Query: 287      tacacctggaacagctgcgtctcgccgtcgacgccacggttgcactccaggtt 339
                ||||||||||||||||||||||||||| || || | ||||||||||| |||||
Sbjct: 26088979 tacacctggaacagctgcgtctcgccggcggcgtcgcggttgcactcgaggtt 26088927



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                              
Query: 403      gtcggacggcacgatcccggcgtcggcgaggatgctggtgaggttg 448
                ||||||||||||||  ||| |||||||||||||  |||| ||||||
Sbjct: 26046097 gtcggacggcacgacgccgccgtcggcgaggatcttggtaaggttg 26046052
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>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0011H09
          Length = 147992

 Score =  113 bits (57), Expect = 5e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                          
Query: 227    ttgccctgcatcggcagcgggcagtcgatgaggttctccccgtcgcggtcgatgcactgg 286
              |||||||||||||| ||  ||||||||| ||| |||| ||||  |||||||| |||||||
Sbjct: 122601 ttgccctgcatcgggagttggcagtcgacgagcttcttcccggagcggtcgacgcactgg 122542

                                                                   
Query: 287    tacacctggaacagctgcgtctcgccgtcgacgccacggttgcactccaggtt 339
              ||||||||||||||||||||||||||| || || | ||||||||||| |||||
Sbjct: 122541 tacacctggaacagctgcgtctcgccggcggcgtcgcggttgcactcgaggtt 122489



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 403   gtcggacggcacgatcccggcgtcggcgaggatgctggtgaggttg 448
             ||||||||||||||  ||| |||||||||||||  |||| ||||||
Sbjct: 79659 gtcggacggcacgacgccgccgtcggcgaggatcttggtaaggttg 79614
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>dbj|AK104512.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H11, full
           insert sequence
          Length = 1085

 Score =  113 bits (57), Expect = 5e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                       
Query: 227 ttgccctgcatcggcagcgggcagtcgatgaggttctccccgtcgcggtcgatgcactgg 286
           |||||||||||||| ||  ||||||||| ||| |||| ||||  |||||||| |||||||
Sbjct: 793 ttgccctgcatcgggagttggcagtcgacgagcttcttcccggagcggtcgacgcactgg 734

                                                                
Query: 287 tacacctggaacagctgcgtctcgccgtcgacgccacggttgcactccaggtt 339
           ||||||||||||||||||||||||||| || || | ||||||||||| |||||
Sbjct: 733 tacacctggaacagctgcgtctcgccggcggcgtcgcggttgcactcgaggtt 681
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>dbj|AK060320.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F07, full
           insert sequence
          Length = 1097

 Score =  113 bits (57), Expect = 5e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                       
Query: 227 ttgccctgcatcggcagcgggcagtcgatgaggttctccccgtcgcggtcgatgcactgg 286
           |||||||||||||| ||  ||||||||| ||| |||| ||||  |||||||| |||||||
Sbjct: 795 ttgccctgcatcgggagttggcagtcgacgagcttcttcccggagcggtcgacgcactgg 736

                                                                
Query: 287 tacacctggaacagctgcgtctcgccgtcgacgccacggttgcactccaggtt 339
           ||||||||||||||||||||||||||| || || | ||||||||||| |||||
Sbjct: 735 tacacctggaacagctgcgtctcgccggcggcgtcgcggttgcactcgaggtt 683
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 398     tcggtgtcggacggcacgatccc 420
               |||||||||||||||||||||||
Sbjct: 4644310 tcggtgtcggacggcacgatccc 4644288
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>ref|NM_193068.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 717

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 403 gtcggacggcacgatcccggcgtcggcgaggatgctggtgaggttg 448
           ||||||||||||||  ||| |||||||||||||  |||| ||||||
Sbjct: 480 gtcggacggcacgacgccgccgtcggcgaggatcttggtaaggttg 435
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>ref|XM_597536.2| PREDICTED: Bos taurus similar to transcription factor-like nuclear
            regulator (LOC519320), mRNA
          Length = 4251

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 373  cctgatgctgctgaggaagtag 394
            ||||||||||||||||||||||
Sbjct: 3727 cctgatgctgctgaggaagtag 3748
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>dbj|AP004306.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0506F02
          Length = 151612

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 403    gtcggacggcacgatcccggcgtcggcgaggatgctggtgaggttg 448
              ||||||||||||||  ||| |||||||||||||  |||| ||||||
Sbjct: 123109 gtcggacggcacgacgccgccgtcggcgaggatcttggtaaggttg 123064
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 292    ctggaacagctgcgtctcgccgtcga 317
              |||||||||| |||||||||||||||
Sbjct: 688667 ctggaacagcggcgtctcgccgtcga 688692
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>emb|AL109622.10|HSDJ526F5 Human DNA sequence from clone RP3-526F5 on chromosome Xq26.3-28
             Contains the 3' end of a novel gene and the gene for a
             novel protein similar to ubiquitin-conjugating enzyme E2N
             (UBC13 homolog, yeast) (UBE2N), complete sequence
          Length = 122900

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 433   gatgctggtgaggttgtggcg 453
             |||||||||||||||||||||
Sbjct: 47703 gatgctggtgaggttgtggcg 47683
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>gb|AC084430.13| Homo sapiens 12p BAC RP11-96B19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 72022

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 371   tccctgatgctgctgaggaag 391
             |||||||||||||||||||||
Sbjct: 49769 tccctgatgctgctgaggaag 49749
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 90     aatccagccgcgcgccgtgca 110
              |||||||||||||||||||||
Sbjct: 679144 aatccagccgcgcgccgtgca 679124
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 110     agatggccggccgcgtcgagc 130
               |||||||||||||||||||||
Sbjct: 6052564 agatggccggccgcgtcgagc 6052584
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>emb|CT737237.2| Pan troglodytes chromosome X clone CH251-44N04 map Xq28, complete
             sequence
          Length = 148267

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 433   gatgctggtgaggttgtggcg 453
             |||||||||||||||||||||
Sbjct: 42597 gatgctggtgaggttgtggcg 42577
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>ref|NM_190089.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3132

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 424 gtcggcgaggatgctggtga 443
           ||||||||||||||||||||
Sbjct: 951 gtcggcgaggatgctggtga 970
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 420     cggcgtcggcgaggatgctg 439
               ||||||||||||||||||||
Sbjct: 3955526 cggcgtcggcgaggatgctg 3955545
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>gb|AC146523.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0045D11
              map near 50283S, complete sequence
          Length = 148306

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    cgacgggcggcggcaatgga 168
              ||||||||||||||||||||
Sbjct: 115281 cgacgggcggcggcaatgga 115300
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>gb|AY658221.1| Synthetic construct Peudomonas aeruginosa clone FLH052493.01F
           PA0777 gene, partial cds
          Length = 753

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  gccgcgcgccgtgcagatgg 115
           ||||||||||||||||||||
Sbjct: 195 gccgcgcgccgtgcagatgg 214
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>gb|AC129567.8| Mus musculus chromosome 8, clone RP23-50L10, complete sequence
          Length = 228046

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   ctggtacacctggaacagct 302
             ||||||||||||||||||||
Sbjct: 50172 ctggtacacctggaacagct 50191
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>ref|XM_814667.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506825.190) partial mRNA
          Length = 1368

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 421 ggcgtcggcgaggatgctgg 440
           ||||||||||||||||||||
Sbjct: 655 ggcgtcggcgaggatgctgg 674
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>ref|XM_815876.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508175.90) partial mRNA
          Length = 1554

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 421 ggcgtcggcgaggatgctgg 440
           ||||||||||||||||||||
Sbjct: 841 ggcgtcggcgaggatgctgg 860
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>gb|AC011287.4| Homo sapiens BAC clone RP11-22K15 from 7, complete sequence
          Length = 132943

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   ggatgctggtgaggttgtgg 451
             ||||||||||||||||||||
Sbjct: 77151 ggatgctggtgaggttgtgg 77170
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>emb|AL590782.8| Human DNA sequence from clone CTD-2524E3 on chromosome Xq25, complete
            sequence
          Length = 84176

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  ggatgctggtgaggttgtgg 451
            ||||||||||||||||||||
Sbjct: 4702 ggatgctggtgaggttgtgg 4721
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>emb|AL391134.13| Human DNA sequence from clone RP11-245M24 on chromosome Xp11.22-11.3
            Contains the 3' end of a nove  gene and a keratin 8 (K8,
            KO, CK8, CYK8, K2C8, CARD2) (KRT8) pseudogene, complete
            sequence
          Length = 58094

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 432  ggatgctggtgaggttgtgg 451
            ||||||||||||||||||||
Sbjct: 8203 ggatgctggtgaggttgtgg 8184
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 396     tctcggtgtcggacggcacg 415
               ||||||||||||||||||||
Sbjct: 1685560 tctcggtgtcggacggcacg 1685579
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>gb|AC120035.6| Homo sapiens chromosome 8, clone RP11-1116K10, complete sequence
          Length = 151045

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   ggatgctggtgaggttgtgg 451
             ||||||||||||||||||||
Sbjct: 31036 ggatgctggtgaggttgtgg 31017
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>emb|AL136230.9| Human DNA sequence from clone RP1-95I21 on chromosome 6, complete
             sequence
          Length = 120515

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   ggatgctggtgaggttgtgg 451
             ||||||||||||||||||||
Sbjct: 48118 ggatgctggtgaggttgtgg 48137
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>emb|AL133271.22| Human DNA sequence from clone RP11-155N17 on chromosome Xq22.1-23,
             complete sequence
          Length = 71998

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   ggatgctggtgaggttgtgg 451
             ||||||||||||||||||||
Sbjct: 15865 ggatgctggtgaggttgtgg 15884
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>emb|AL109618.1|HSJ775C13 Human DNA sequence from clone RP4-775C13 on chromosome 20p12.1-13
             Contains an NS1-associated protein 1 (NSAP1) pseudogene,
             complete sequence
          Length = 103819

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    caacacaaaggtacatccat 84
             ||||||||||||||||||||
Sbjct: 65107 caacacaaaggtacatccat 65088
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>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14
          Length = 346301

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    tctcggtgtcggacggcacg 415
              ||||||||||||||||||||
Sbjct: 152991 tctcggtgtcggacggcacg 152972
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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   tctcggtgtcggacggcacg 415
             ||||||||||||||||||||
Sbjct: 82130 tctcggtgtcggacggcacg 82149
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>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 101    gcgccgtgcagatggccggccgcgtcga 128
              |||| ||||||||||| |||||||||||
Sbjct: 241408 gcgcggtgcagatggcgggccgcgtcga 241435
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>gb|AC119741.3| Homo sapiens 3 BAC RP11-570O24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 191857

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    tgtctttgcagttgccctgc 235
              ||||||||||||||||||||
Sbjct: 102038 tgtctttgcagttgccctgc 102019
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>gb|AC114770.4| Homo sapiens BAC clone RP11-422D16 from 4, complete sequence
          Length = 127953

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   ggatgctggtgaggttgtgg 451
             ||||||||||||||||||||
Sbjct: 78576 ggatgctggtgaggttgtgg 78557
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>gb|AC093267.2| Homo sapiens chromosome 5 clone RP11-280F11, complete sequence
          Length = 170999

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   ggatgctggtgaggttgtgg 451
             ||||||||||||||||||||
Sbjct: 17735 ggatgctggtgaggttgtgg 17716
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>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete
             sequence
          Length = 152172

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   gcgccgtgcagatggccggc 120
             ||||||||||||||||||||
Sbjct: 33128 gcgccgtgcagatggccggc 33109
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>gb|AC004659.1|AC004659 Homo sapiens chromosome 19, CIT-HSP-87m17 BAC clone, complete sequence
          Length = 129577

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   ggatgctggtgaggttgtgg 451
             ||||||||||||||||||||
Sbjct: 31583 ggatgctggtgaggttgtgg 31564
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 149      cgacgggcggcggcaatgga 168
                ||||||||||||||||||||
Sbjct: 13982444 cgacgggcggcggcaatgga 13982463
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 101      gcgccgtgcagatggccggc 120
                ||||||||||||||||||||
Sbjct: 19343253 gcgccgtgcagatggccggc 19343272
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 424      gtcggcgaggatgctggtga 443
                ||||||||||||||||||||
Sbjct: 41216036 gtcggcgaggatgctggtga 41216055
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>gb|AC093722.2| Homo sapiens BAC clone CTD-2012I17 from 4, complete sequence
          Length = 163353

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   ggatgctggtgaggttgtgg 451
             ||||||||||||||||||||
Sbjct: 53196 ggatgctggtgaggttgtgg 53215
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>dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1150F11
          Length = 130355

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 424   gtcggcgaggatgctggtga 443
             ||||||||||||||||||||
Sbjct: 32951 gtcggcgaggatgctggtga 32970
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>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0504E02
          Length = 137468

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 424    gtcggcgaggatgctggtga 443
              ||||||||||||||||||||
Sbjct: 113091 gtcggcgaggatgctggtga 113110
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 101     gcgccgtgcagatggccggccgcgtcga 128
               ||||||||||| ||| ||||||||||||
Sbjct: 2808375 gcgccgtgcagctggacggccgcgtcga 2808402
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>gb|AE004851.1| Pseudomonas aeruginosa PAO1, section 412 of 529 of the complete
            genome
          Length = 13101

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 98   cgcgcgccgtgcagatggccggcc 121
            ||||||| ||||||||||||||||
Sbjct: 6179 cgcgcgcggtgcagatggccggcc 6156
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>gb|AE004512.1| Pseudomonas aeruginosa PAO1, section 73 of 529 of the complete genome
          Length = 10081

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   gccgcgcgccgtgcagatgg 115
            ||||||||||||||||||||
Sbjct: 6749 gccgcgcgccgtgcagatgg 6730
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>gb|AC129915.6| Homo sapiens chromosome 8, clone CTD-3212A4, complete sequence
          Length = 162359

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 432    ggatgctggtgaggttgtgg 451
              ||||||||||||||||||||
Sbjct: 132982 ggatgctggtgaggttgtgg 132963
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>gb|AC124802.11| Homo sapiens chromosome 17, clone RP11-278N14, complete sequence
          Length = 62029

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   ggatgctggtgaggttgtgg 451
             ||||||||||||||||||||
Sbjct: 24406 ggatgctggtgaggttgtgg 24387
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                           
Query: 137     gccgccacacccc-gacgggcggcggca 163
               ||||||||||||| ||||||||||||||
Sbjct: 5162600 gccgccacacccccgacgggcggcggca 5162627
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>gb|AE005041.1| Halobacterium sp. NRC-1 section 72 of 170 of the complete genome
          Length = 13759

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 351  cggtcccctccctgatggcg 370
            ||||||||||||||||||||
Sbjct: 2482 cggtcccctccctgatggcg 2463
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>dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7
          Length = 74350

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 181  actcaaatttaatcagaagg 200
            ||||||||||||||||||||
Sbjct: 9263 actcaaatttaatcagaagg 9282
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>gb|AC174827.3| Cavia porcellus clone CH234-477P24, complete sequence
          Length = 156330

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    ttagaactcaaatttaatca 195
              ||||||||||||||||||||
Sbjct: 130581 ttagaactcaaatttaatca 130562
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>dbj|AK070064.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041B03, full
            insert sequence
          Length = 3785

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 424  gtcggcgaggatgctggtga 443
            ||||||||||||||||||||
Sbjct: 1284 gtcggcgaggatgctggtga 1303
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>dbj|AP003729.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-126A9, complete
             sequence
          Length = 49870

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   ggatgctggtgaggttgtgg 451
             ||||||||||||||||||||
Sbjct: 18306 ggatgctggtgaggttgtgg 18287
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    catccatcacgtaatccagc 97
             ||||||||||||||||||||
Sbjct: 94660 catccatcacgtaatccagc 94641
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 101      gcgccgtgcagatggccggc 120
                ||||||||||||||||||||
Sbjct: 19354529 gcgccgtgcagatggccggc 19354548
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 149      cgacgggcggcggcaatgga 168
                ||||||||||||||||||||
Sbjct: 14064446 cgacgggcggcggcaatgga 14064465
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>dbj|AP003123.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-402K1, complete
            sequence
          Length = 187735

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 432  ggatgctggtgaggttgtgg 451
            ||||||||||||||||||||
Sbjct: 8847 ggatgctggtgaggttgtgg 8828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,173,705
Number of Sequences: 3902068
Number of extensions: 3173705
Number of successful extensions: 75308
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 74055
Number of HSP's gapped (non-prelim): 1254
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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