ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6f20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SLAP_LACHE (P38059) S-layer protein precursor (Surface layer pro... 29 3.6
2ARLY_CLOPE (Q8XMJ8) Argininosuccinate lyase (EC 4.3.2.1) (Argino... 28 6.1
3PURO_METTH (O27099) IMP cyclohydrolase (EC 3.5.4.10) (Inosinicas... 28 6.1
4Y983_AQUAE (O67109) Hypothetical protein aq_983 28 7.9
5ZN337_HUMAN (Q9Y3M9) Zinc finger protein 337 28 7.9

>SLAP_LACHE (P38059) S-layer protein precursor (Surface layer protein)|
          Length = 439

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 111 WRFGNEYYGRVLHTGRSHNGQVTFYRITGDHPGSNTK 221
           + FG+E  G+ +  G S N  VTF   TGD P S  K
Sbjct: 129 FNFGSENAGKEITIG-SANPNVTFTEKTGDQPASTVK 164



to top

>ARLY_CLOPE (Q8XMJ8) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 466

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 135 GRVLHTGRSHNGQVTFYRITGDHPGSNTKCIRKGVSAVLI 254
           G+ LHTGRS N QVT           +TK   KG   +LI
Sbjct: 99  GKKLHTGRSRNDQVTL----------DTKLYLKGYIKILI 128



to top

>PURO_METTH (O27099) IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP|
           synthetase)
          Length = 202

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 129 YYGRVLHTGRSHNGQVTFYRITGDHPGSNTKCIRKGVSAVL 251
           Y GR+L  GR+ NG    YR++     + T  I++   AV+
Sbjct: 2   YLGRILAVGRNSNGSFVAYRVSSRSFPNRTTSIQEERVAVV 42



to top

>Y983_AQUAE (O67109) Hypothetical protein aq_983|
          Length = 292

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 50  YNQTVSVHQLFGAVAFLVREMAVWK*VLRPSITHRSFAQW 169
           Y +  S+H ++  +A   + + VWK V+      R + +W
Sbjct: 223 YRKEKSLHDVYACIAMFKKNLFVWKEVIPVYRKGRKYTEW 262



to top

>ZN337_HUMAN (Q9Y3M9) Zinc finger protein 337|
          Length = 751

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 92  LPHQTTGELRPFGCITCTRRKXEKNSKN 9
           L  +T  E +P+GC  C RR  +K+S N
Sbjct: 477 LHQRTHSEEKPYGCRECGRRFRDKSSYN 504


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,743,382
Number of Sequences: 219361
Number of extensions: 704135
Number of successful extensions: 2013
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2013
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top