ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YFGH_ECOLI (P65290) Hypothetical lipoprotein yfgH precursor 28 5.5
2YFGH_ECO57 (P65291) Hypothetical lipoprotein yfgH precursor 28 5.5

>YFGH_ECOLI (P65290) Hypothetical lipoprotein yfgH precursor|
          Length = 172

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 1   KCCSSTQVTSVISTLPEQTRIQVNTVCP 84
           +C  +T +  VI+T   +TRIQ NT CP
Sbjct: 142 ECQFTTGLAVVITTTYNETRIQPNTKCP 169



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>YFGH_ECO57 (P65291) Hypothetical lipoprotein yfgH precursor|
          Length = 172

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 1   KCCSSTQVTSVISTLPEQTRIQVNTVCP 84
           +C  +T +  VI+T   +TRIQ NT CP
Sbjct: 142 ECQFTTGLAVVITTTYNETRIQPNTKCP 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,699,546
Number of Sequences: 219361
Number of extensions: 150437
Number of successful extensions: 573
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 80,573,946
effective HSP length: 10
effective length of database: 78,380,336
effective search space used: 1881128064
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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