Clone Information

BLAST Search Result

Clone Name	rbaal6f01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_472945.1\| Oryza sativa (japonica cultivar-group), predic...	192	1e-45
2	dbj\|AK100299.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	192	1e-45
3	emb\|AL606998.3\|OSJN00125 Oryza sativa genomic DNA, chromosome 4,...	188	2e-44
4	emb\|AL606623.3\|OSJN00053 Oryza sativa genomic DNA, chromosome 4,...	188	2e-44
5	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	188	2e-44
6	emb\|AL442114.2\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	188	2e-44
7	dbj\|AK102446.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	184	3e-43
8	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	133	8e-28
9	dbj\|AP004705.3\| Oryza sativa (japonica cultivar-group) genomic D...	133	8e-28
10	dbj\|AK067773.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	133	8e-28
11	gb\|AY105090.1\| Zea mays PCO088761 mRNA sequence	72	3e-09
12	gb\|AY110833.1\| Zea mays CL8738_1 mRNA sequence	48	0.038
13	gb\|AC092710.6\| Mus musculus chromosome 13, clone RP23-5A19, comp...	44	0.59
14	gb\|AC161249.2\| Mus musculus BAC clone RP24-541G2 from chromosome...	44	0.59
15	gb\|DQ257435.1\| Uncultured organism HF10_3D09, complete sequence	44	0.59
16	emb\|BX950225.10\| Zebrafish DNA sequence from clone CH211-173B8 i...	42	2.3
17	gb\|AC096638.2\| Homo sapiens chromosome 1 clone RP11-224O19, comp...	42	2.3
18	gb\|AC105417.1\| Homo sapiens chromosome 4 clone RP11-378N18, comp...	42	2.3
19	gb\|AC092015.2\| Homo sapiens chromosome 1 clone RP11-358L14, comp...	42	2.3
20	ref\|XM_228362.3\| PREDICTED: Rattus norvegicus similar to RIKEN c...	42	2.3
21	dbj\|AP006565.1\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	42	2.3
22	emb\|AL163203.2\|HS21C003 Homo sapiens chromosome 21 segment HS21C003	42	2.3
23	emb\|AL050302.2\|HSB62L20 Homo sapiens chromosome 21 BAC RGB62L20,...	42	2.3
24	emb\|AL049911.2\|HS16C2 Homo sapiens chromosome 21 PAC RPCIP704C21...	42	2.3
25	emb\|AL359312.18\| Human DNA sequence from clone RP11-216E19 on ch...	42	2.3
26	dbj\|AP005213.3\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	42	2.3
27	gb\|AC129585.12\| Mus musculus chromosome 7, clone RP24-297P18, co...	40	9.2
28	gb\|CP000068.1\| Trypanosoma brucei chromosome 5, complete sequence	40	9.2
29	gb\|AC159441.1\| Trypanosoma brucei chromosome 5 clone RPCI93-30F7...	40	9.2
30	emb\|CR713714.2\|CNS0GDNI Tetraodon nigroviridis full-length cDNA	40	9.2
31	emb\|CR712836.2\|CNS0GCZ4 Tetraodon nigroviridis full-length cDNA	40	9.2
32	emb\|CR381644.8\| Zebrafish DNA sequence from clone CH211-80A15 in...	40	9.2
33	gb\|AC122427.6\| Mus musculus BAC clone RP24-175C2 from chromosome...	40	9.2
34	gb\|AE010299.1\| Methanosarcina acetivorans str. C2A, complete genome	40	9.2
35	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
36	gb\|AC016717.8\| Homo sapiens BAC clone RP11-314B1 from 2, complet...	40	9.2
37	gb\|AY204469.1\| Myxococcus xanthus clone C1213 putative histidine...	40	9.2
38	dbj\|AP003278.5\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
39	dbj\|AP004636.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
40	dbj\|AB093612.1\| Turnip mosaic virus gene for polyprotein, comple...	40	9.2
41	gb\|AC162175.10\| Mus musculus chromosome 7, clone RP23-327E18, co...	40	9.2

>ref|XM_472945.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1362

 Score =  192 bits (97), Expect = 1e-45
 Identities = 250/301 (83%)
 Strand = Plus / Minus

                                                                        
Query: 312  aaacaagtttgtagcttcgacaaatagggcacatctcaatatcaagagcatatccatcat 371
            |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 aaacaagtttgtagttctgacaaatagggcacatctcaatatcaagagcatatccatcat 1115

                                                                        
Query: 372  tgcaatctaataaaagatgattagaatgacggaaccgcggagcccggttgtgcaactcct 431
            |||||||| ||||||   |||||| |||| |||| |  ||  ||||||| |||| |||||
Sbjct: 1114 tgcaatctgataaaaaccgattagcatgaaggaatcttggcccccggttatgcacctcct 1055

                                                                        
Query: 432  gcctcttgtcgatgcgcaacaaggataataactcctcgtaatcctcttttggcaaattga 491
            |  |||||||| |   |||||||||||||||||| ||||| | ||| ||| | ||| |||
Sbjct: 1054 gtgtcttgtcggtattcaacaaggataataactcttcgtactgctcctttcgtaaactga 995

                                                                        
Query: 492  agtttttgtcaattctgaggctcttaatacccgacactgctttcatattaaatgacttga 551
            ||  | |  ||| |||||||  |||||| ||  |||| || ||| |||||||||||||||
Sbjct: 994  agagtgttccaactctgaggtgcttaattccaaacaccgccttcgtattaaatgacttga 935

                                                                        
Query: 552  gattggcaataaggccatccaaagttaatcgcgggcagcgcgcaatactcaactttgtta 611
            |||||| ||||||||||||||||||||| || ||||||| |  ||| |||| ||||||||
Sbjct: 934  gattggaaataaggccatccaaagttaaccgtgggcagcccaaaatgctcagctttgtta 875

             
Query: 612  a 612
            |
Sbjct: 874  a 874

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>dbj|AK100299.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077K22, full
            insert sequence
          Length = 2784

 Score =  192 bits (97), Expect = 1e-45
 Identities = 250/301 (83%)
 Strand = Plus / Minus

                                                                        
Query: 312  aaacaagtttgtagcttcgacaaatagggcacatctcaatatcaagagcatatccatcat 371
            |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2074 aaacaagtttgtagttctgacaaatagggcacatctcaatatcaagagcatatccatcat 2015

                                                                        
Query: 372  tgcaatctaataaaagatgattagaatgacggaaccgcggagcccggttgtgcaactcct 431
            |||||||| ||||||   |||||| |||| |||| |  ||  ||||||| |||| |||||
Sbjct: 2014 tgcaatctgataaaaaccgattagcatgaaggaatcttggcccccggttatgcacctcct 1955

                                                                        
Query: 432  gcctcttgtcgatgcgcaacaaggataataactcctcgtaatcctcttttggcaaattga 491
            |  |||||||| |   |||||||||||||||||| ||||| | ||| ||| | ||| |||
Sbjct: 1954 gtgtcttgtcggtattcaacaaggataataactcttcgtactgctcctttcgtaaactga 1895

                                                                        
Query: 492  agtttttgtcaattctgaggctcttaatacccgacactgctttcatattaaatgacttga 551
            ||  | |  ||| |||||||  |||||| ||  |||| || ||| |||||||||||||||
Sbjct: 1894 agagtgttccaactctgaggtgcttaattccaaacaccgccttcgtattaaatgacttga 1835

                                                                        
Query: 552  gattggcaataaggccatccaaagttaatcgcgggcagcgcgcaatactcaactttgtta 611
            |||||| ||||||||||||||||||||| || ||||||| |  ||| |||| ||||||||
Sbjct: 1834 gattggaaataaggccatccaaagttaaccgtgggcagcccaaaatgctcagctttgtta 1775

             
Query: 612  a 612
            |
Sbjct: 1774 a 1774

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>emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09,
             complete sequence
          Length = 120583

 Score =  188 bits (95), Expect = 2e-44
 Identities = 233/279 (83%)
 Strand = Plus / Plus

                                                                         
Query: 312   aaacaagtttgtagcttcgacaaatagggcacatctcaatatcaagagcatatccatcat 371
             |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78056 aaacaagtttgtagttctgacaaatagggcacatctcaatatcaagagcatatccatcat 78115

                                                                         
Query: 372   tgcaatctaataaaagatgattagaatgacggaaccgcggagcccggttgtgcaactcct 431
             |||||||| ||||||   |||||| |||| |||| |  ||  ||||||| |||| |||||
Sbjct: 78116 tgcaatctgataaaaaccgattagcatgaaggaatcttggcccccggttatgcacctcct 78175

                                                                         
Query: 432   gcctcttgtcgatgcgcaacaaggataataactcctcgtaatcctcttttggcaaattga 491
             |  |||||||| |   |||||||||||||||||| ||||| | ||| ||| | ||| |||
Sbjct: 78176 gtgtcttgtcggtattcaacaaggataataactcttcgtactgctcctttcgtaaactga 78235

                                                                         
Query: 492   agtttttgtcaattctgaggctcttaatacccgacactgctttcatattaaatgacttga 551
             ||  | |  ||| |||||||  |||||| ||  |||| || ||| |||||||||||||||
Sbjct: 78236 agagtgttccaactctgaggtgcttaattccaaacaccgccttcgtattaaatgacttga 78295

                                                    
Query: 552   gattggcaataaggccatccaaagttaatcgcgggcagc 590
             |||||| ||||||||||||||||||||| || |||||||
Sbjct: 78296 gattggaaataaggccatccaaagttaaccgtgggcagc 78334

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>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15,
              complete sequence
          Length = 150864

 Score =  188 bits (95), Expect = 2e-44
 Identities = 233/279 (83%)
 Strand = Plus / Plus

                                                                          
Query: 312    aaacaagtttgtagcttcgacaaatagggcacatctcaatatcaagagcatatccatcat 371
              |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144869 aaacaagtttgtagttctgacaaatagggcacatctcaatatcaagagcatatccatcat 144928

                                                                          
Query: 372    tgcaatctaataaaagatgattagaatgacggaaccgcggagcccggttgtgcaactcct 431
              |||||||| ||||||   |||||| |||| |||| |  ||  ||||||| |||| |||||
Sbjct: 144929 tgcaatctgataaaaaccgattagcatgaaggaatcttggcccccggttatgcacctcct 144988

                                                                          
Query: 432    gcctcttgtcgatgcgcaacaaggataataactcctcgtaatcctcttttggcaaattga 491
              |  |||||||| |   |||||||||||||||||| ||||| | ||| ||| | ||| |||
Sbjct: 144989 gtgtcttgtcggtattcaacaaggataataactcttcgtactgctcctttcgtaaactga 145048

                                                                          
Query: 492    agtttttgtcaattctgaggctcttaatacccgacactgctttcatattaaatgacttga 551
              ||  | |  ||| |||||||  |||||| ||  |||| || ||| |||||||||||||||
Sbjct: 145049 agagtgttccaactctgaggtgcttaattccaaacaccgccttcgtattaaatgacttga 145108

                                                     
Query: 552    gattggcaataaggccatccaaagttaatcgcgggcagc 590
              |||||| ||||||||||||||||||||| || |||||||
Sbjct: 145109 gattggaaataaggccatccaaagttaaccgtgggcagc 145147

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  188 bits (95), Expect = 2e-44
 Identities = 233/279 (83%)
 Strand = Plus / Plus

                                                                            
Query: 312      aaacaagtttgtagcttcgacaaatagggcacatctcaatatcaagagcatatccatcat 371
                |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24255644 aaacaagtttgtagttctgacaaatagggcacatctcaatatcaagagcatatccatcat 24255703

                                                                            
Query: 372      tgcaatctaataaaagatgattagaatgacggaaccgcggagcccggttgtgcaactcct 431
                |||||||| ||||||   |||||| |||| |||| |  ||  ||||||| |||| |||||
Sbjct: 24255704 tgcaatctgataaaaaccgattagcatgaaggaatcttggcccccggttatgcacctcct 24255763

                                                                            
Query: 432      gcctcttgtcgatgcgcaacaaggataataactcctcgtaatcctcttttggcaaattga 491
                |  |||||||| |   |||||||||||||||||| ||||| | ||| ||| | ||| |||
Sbjct: 24255764 gtgtcttgtcggtattcaacaaggataataactcttcgtactgctcctttcgtaaactga 24255823

                                                                            
Query: 492      agtttttgtcaattctgaggctcttaatacccgacactgctttcatattaaatgacttga 551
                ||  | |  ||| |||||||  |||||| ||  |||| || ||| |||||||||||||||
Sbjct: 24255824 agagtgttccaactctgaggtgcttaattccaaacaccgccttcgtattaaatgacttga 24255883

                                                       
Query: 552      gattggcaataaggccatccaaagttaatcgcgggcagc 590
                |||||| ||||||||||||||||||||| || |||||||
Sbjct: 24255884 gattggaaataaggccatccaaagttaaccgtgggcagc 24255922

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>emb|AL442114.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811E11, complete
             sequence
          Length = 59348

 Score =  188 bits (95), Expect = 2e-44
 Identities = 233/279 (83%)
 Strand = Plus / Plus

                                                                         
Query: 312   aaacaagtttgtagcttcgacaaatagggcacatctcaatatcaagagcatatccatcat 371
             |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50197 aaacaagtttgtagttctgacaaatagggcacatctcaatatcaagagcatatccatcat 50256

                                                                         
Query: 372   tgcaatctaataaaagatgattagaatgacggaaccgcggagcccggttgtgcaactcct 431
             |||||||| ||||||   |||||| |||| |||| |  ||  ||||||| |||| |||||
Sbjct: 50257 tgcaatctgataaaaaccgattagcatgaaggaatcttggcccccggttatgcacctcct 50316

                                                                         
Query: 432   gcctcttgtcgatgcgcaacaaggataataactcctcgtaatcctcttttggcaaattga 491
             |  |||||||| |   |||||||||||||||||| ||||| | ||| ||| | ||| |||
Sbjct: 50317 gtgtcttgtcggtattcaacaaggataataactcttcgtactgctcctttcgtaaactga 50376

                                                                         
Query: 492   agtttttgtcaattctgaggctcttaatacccgacactgctttcatattaaatgacttga 551
             ||  | |  ||| |||||||  |||||| ||  |||| || ||| |||||||||||||||
Sbjct: 50377 agagtgttccaactctgaggtgcttaattccaaacaccgccttcgtattaaatgacttga 50436

                                                    
Query: 552   gattggcaataaggccatccaaagttaatcgcgggcagc 590
             |||||| ||||||||||||||||||||| || |||||||
Sbjct: 50437 gattggaaataaggccatccaaagttaaccgtgggcagc 50475

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>dbj|AK102446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093N24, full
            insert sequence
          Length = 2571

 Score =  184 bits (93), Expect = 3e-43
 Identities = 249/301 (82%)
 Strand = Plus / Minus

                                                                        
Query: 312  aaacaagtttgtagcttcgacaaatagggcacatctcaatatcaagagcatatccatcat 371
            |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1862 aaacaagtttgtagttctgacaaatagggcacatctcaatatcaagagcatatccatcat 1803

                                                                        
Query: 372  tgcaatctaataaaagatgattagaatgacggaaccgcggagcccggttgtgcaactcct 431
            |||||||| ||||||   |||||| |||| |||| |  ||  ||||||| |||| |||||
Sbjct: 1802 tgcaatctgataaaaaccgattagcatgaaggaatcttggcccccggttatgcacctcct 1743

                                                                        
Query: 432  gcctcttgtcgatgcgcaacaaggataataactcctcgtaatcctcttttggcaaattga 491
            |  |||||||| |   |||||||||||||||||| ||||| | ||| ||| | ||| |||
Sbjct: 1742 gtgtcttgtcggtattcaacaaggataataactcttcgtactgctcctttcgtaaactga 1683

                                                                        
Query: 492  agtttttgtcaattctgaggctcttaatacccgacactgctttcatattaaatgacttga 551
            ||  | |  ||| |||||||  |||||| ||  |||| || ||| |||||||||||||||
Sbjct: 1682 agagtgttccaactctgaggtgcttaattccaaacaccgccttcgtattaaatgacttga 1623

                                                                        
Query: 552  gattggcaataaggccatccaaagttaatcgcgggcagcgcgcaatactcaactttgtta 611
            |||||| ||||||||||||||||||| | || ||||||| |  ||| |||| ||||||||
Sbjct: 1622 gattggaaataaggccatccaaagttgaccgtgggcagcccaaaatgctcagctttgtta 1563

             
Query: 612  a 612
            |
Sbjct: 1562 a 1562

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  133 bits (67), Expect = 8e-28
 Identities = 231/284 (81%), Gaps = 5/284 (1%)
 Strand = Plus / Plus

                                                                           
Query: 312     aaacaagtttgtagcttcgacaaatagggcacatctcaatatcaagagca----tatcca 367
               |||||||||||||| |  |||||||||||||||||||||||||| |||||    ||||||
Sbjct: 8294532 aaacaagtttgtagttctgacaaatagggcacatctcaatatcaggagcatatctatcca 8294591

                                                                           
Query: 368     tcattgcaatctaataaaagatgattagaatgacggaa-ccgcggagcccggttgtgcaa 426
               |||||||||||| ||||||  ||||||| |||| |||| |   ||  |||| || |||| 
Sbjct: 8294592 tcattgcaatctgataaaaactgattagcatgaaggaatctttggcccccgattatgcac 8294651

                                                                           
Query: 427     ctcctgcctcttgtcgatgcgcaacaaggataataactcctcgtaatcctcttttggcaa 486
               ||||||  |||||||| |   |||||||||||||||||| ||||| | ||| ||  | ||
Sbjct: 8294652 ctcctgtgtcttgtcggtattcaacaaggataataactcttcgtactgctccttccgtaa 8294711

                                                                           
Query: 487     attgaagtttttgtcaattctgaggctcttaatacccgacactgctttcatattaaatga 546
               | |||||  | |  ||| |||||||  |||||| ||  |||| || ||| ||||||||||
Sbjct: 8294712 actgaagagtgttccaactctgaggtgcttaattccaaacaccgcattcgtattaaatga 8294771

                                                           
Query: 547     cttgagattggcaataaggccatccaaagttaatcgcgggcagc 590
               ||||||||||| ||||||||||||||||||||| || |||||||
Sbjct: 8294772 cttgagattggaaataaggccatccaaagttaaccgtgggcagc 8294815



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 375      aatctaataaaagatgatta 394
                ||||||||||||||||||||
Sbjct: 19355757 aatctaataaaagatgatta 19355738

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>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0682A06
          Length = 142023

 Score =  133 bits (67), Expect = 8e-28
 Identities = 231/284 (81%), Gaps = 5/284 (1%)
 Strand = Plus / Plus

                                                                         
Query: 312   aaacaagtttgtagcttcgacaaatagggcacatctcaatatcaagagca----tatcca 367
             |||||||||||||| |  |||||||||||||||||||||||||| |||||    ||||||
Sbjct: 34641 aaacaagtttgtagttctgacaaatagggcacatctcaatatcaggagcatatctatcca 34700

                                                                         
Query: 368   tcattgcaatctaataaaagatgattagaatgacggaa-ccgcggagcccggttgtgcaa 426
             |||||||||||| ||||||  ||||||| |||| |||| |   ||  |||| || |||| 
Sbjct: 34701 tcattgcaatctgataaaaactgattagcatgaaggaatctttggcccccgattatgcac 34760

                                                                         
Query: 427   ctcctgcctcttgtcgatgcgcaacaaggataataactcctcgtaatcctcttttggcaa 486
             ||||||  |||||||| |   |||||||||||||||||| ||||| | ||| ||  | ||
Sbjct: 34761 ctcctgtgtcttgtcggtattcaacaaggataataactcttcgtactgctccttccgtaa 34820

                                                                         
Query: 487   attgaagtttttgtcaattctgaggctcttaatacccgacactgctttcatattaaatga 546
             | |||||  | |  ||| |||||||  |||||| ||  |||| || ||| ||||||||||
Sbjct: 34821 actgaagagtgttccaactctgaggtgcttaattccaaacaccgcattcgtattaaatga 34880

                                                         
Query: 547   cttgagattggcaataaggccatccaaagttaatcgcgggcagc 590
             ||||||||||| ||||||||||||||||||||| || |||||||
Sbjct: 34881 cttgagattggaaataaggccatccaaagttaaccgtgggcagc 34924

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>dbj|AK067773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118K04, full
           insert sequence
          Length = 1131

 Score =  133 bits (67), Expect = 8e-28
 Identities = 231/284 (81%), Gaps = 5/284 (1%)
 Strand = Plus / Minus

                                                                       
Query: 312 aaacaagtttgtagcttcgacaaatagggcacatctcaatatcaagagca----tatcca 367
           |||||||||||||| |  |||||||||||||||||||||||||| |||||    ||||||
Sbjct: 583 aaacaagtttgtagttctgacaaatagggcacatctcaatatcaggagcatatctatcca 524

                                                                       
Query: 368 tcattgcaatctaataaaagatgattagaatgacggaa-ccgcggagcccggttgtgcaa 426
           |||||||||||| ||||||  ||||||| |||| |||| |   ||  |||| || |||| 
Sbjct: 523 tcattgcaatctgataaaaactgattagcatgaaggaatctttggcccccgattatgcac 464

                                                                       
Query: 427 ctcctgcctcttgtcgatgcgcaacaaggataataactcctcgtaatcctcttttggcaa 486
           ||||||  |||||||| |   |||||||||||||||||| ||||| | ||| ||  | ||
Sbjct: 463 ctcctgtgtcttgtcggtattcaacaaggataataactcttcgtactgctccttccgtaa 404

                                                                       
Query: 487 attgaagtttttgtcaattctgaggctcttaatacccgacactgctttcatattaaatga 546
           | |||||  | |  ||| |||||||  |||||| ||  |||| || ||| ||||||||||
Sbjct: 403 actgaagagtgttccaactctgaggtgcttaattccaaacaccgcattcgtattaaatga 344

                                                       
Query: 547 cttgagattggcaataaggccatccaaagttaatcgcgggcagc 590
           ||||||||||| ||||||||||||||||||||| || |||||||
Sbjct: 343 cttgagattggaaataaggccatccaaagttaaccgtgggcagc 300

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>gb|AY105090.1| Zea mays PCO088761 mRNA sequence
          Length = 856

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                       
Query: 312 aaacaagtttgtagcttcgacaaatagggcacatctcaatatcaagagcatatccatcat 371
           |||||||||||||| || |||||| ||||||| ||||||||||||||||| || ||||||
Sbjct: 472 aaacaagtttgtagtttggacaaagagggcacttctcaatatcaagagcaaattcatcat 413

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>gb|AY110833.1| Zea mays CL8738_1 mRNA sequence
          Length = 1122

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 312 aaacaagtttgtagcttcgacaaatagggcacatctcaatatcaagagcata 363
           ||||||| |||||| |  |||||| ||| ||| |||||||||||||||||||
Sbjct: 735 aaacaagcttgtagttcggacaaagaggacacttctcaatatcaagagcata 786

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>gb|AC092710.6| Mus musculus chromosome 13, clone RP23-5A19, complete sequence
          Length = 268129

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 607    tgttaacttcagattgctttga 628
              ||||||||||||||||||||||
Sbjct: 207214 tgttaacttcagattgctttga 207235

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>gb|AC161249.2| Mus musculus BAC clone RP24-541G2 from chromosome 13, complete
            sequence
          Length = 162934

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgttaacttcagattgctttga 628
            ||||||||||||||||||||||
Sbjct: 8696 tgttaacttcagattgctttga 8717

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>gb|DQ257435.1| Uncultured organism HF10_3D09, complete sequence
          Length = 40468

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 473   tcctcttttggcaaattgaagt 494
             ||||||||||||||||||||||
Sbjct: 39598 tcctcttttggcaaattgaagt 39619

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>emb|BX950225.10| Zebrafish DNA sequence from clone CH211-173B8 in linkage group 19,
             complete sequence
          Length = 105707

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 356   agagcatatccatcattgcaa 376
             |||||||||||||||||||||
Sbjct: 47050 agagcatatccatcattgcaa 47070

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>gb|AC096638.2| Homo sapiens chromosome 1 clone RP11-224O19, complete sequence
          Length = 185784

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 623    ctttgaagaacaacattcaaa 643
              |||||||||||||||||||||
Sbjct: 178929 ctttgaagaacaacattcaaa 178909

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>gb|AC105417.1| Homo sapiens chromosome 4 clone RP11-378N18, complete sequence
          Length = 75994

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   aaatttctcttcaaacttctc 204
             |||||||||||||||||||||
Sbjct: 46185 aaatttctcttcaaacttctc 46205

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>gb|AC092015.2| Homo sapiens chromosome 1 clone RP11-358L14, complete sequence
          Length = 161815

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 623    ctttgaagaacaacattcaaa 643
              |||||||||||||||||||||
Sbjct: 155331 ctttgaagaacaacattcaaa 155351

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>ref|XM_228362.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1200015N20
            (predicted) (LOC294565), mRNA
          Length = 2040

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 182  tcaaatttctcttcaaacttc 202
            |||||||||||||||||||||
Sbjct: 1073 tcaaatttctcttcaaacttc 1053

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>dbj|AP006565.1| Homo sapiens genomic DNA, chromosome 18 clone:RP11-1157N02_B, complete
             sequence
          Length = 93824

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 494   tttttgtcaattctgaggctcttaa 518
             ||||| |||||||||||||||||||
Sbjct: 48423 tttttttcaattctgaggctcttaa 48447

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>emb|AL163203.2|HS21C003 Homo sapiens chromosome 21 segment HS21C003
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 494   tttttgtcaattctgaggctcttaa 518
             ||||| |||||||||||||||||||
Sbjct: 80637 tttttttcaattctgaggctcttaa 80613

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>emb|AL050302.2|HSB62L20 Homo sapiens chromosome 21 BAC RGB62L20, complete sequence
          Length = 119182

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 494   tttttgtcaattctgaggctcttaa 518
             ||||| |||||||||||||||||||
Sbjct: 98421 tttttttcaattctgaggctcttaa 98445

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>emb|AL049911.2|HS16C2 Homo sapiens chromosome 21 PAC RPCIP704C216Q2, complete sequence
          Length = 111648

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 494   tttttgtcaattctgaggctcttaa 518
             ||||| |||||||||||||||||||
Sbjct: 23048 tttttttcaattctgaggctcttaa 23072

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>emb|AL359312.18| Human DNA sequence from clone RP11-216E19 on chromosome 18, complete
             sequence
          Length = 143463

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 494   tttttgtcaattctgaggctcttaa 518
             ||||| |||||||||||||||||||
Sbjct: 23884 tttttttcaattctgaggctcttaa 23908

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>dbj|AP005213.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-97O24, complete
              sequence
          Length = 162364

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 494    tttttgtcaattctgaggctcttaa 518
              ||||| |||||||||||||||||||
Sbjct: 160019 tttttttcaattctgaggctcttaa 160043

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>gb|AC129585.12| Mus musculus chromosome 7, clone RP24-297P18, complete sequence
          Length = 163046

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 177   ccagatcaaatttctcttcaaact 200
             |||| |||||||||||||||||||
Sbjct: 55167 ccagctcaaatttctcttcaaact 55190

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>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 357    gagcatatccatcattgcaa 376
              ||||||||||||||||||||
Sbjct: 252291 gagcatatccatcattgcaa 252310

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>gb|AC159441.1| Trypanosoma brucei chromosome 5 clone RPCI93-30F7, complete sequence
          Length = 101712

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   gagcatatccatcattgcaa 376
             ||||||||||||||||||||
Sbjct: 37879 gagcatatccatcattgcaa 37860

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>emb|CR713714.2|CNS0GDNI Tetraodon nigroviridis full-length cDNA
          Length = 496

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 551 agattggcaataaggccatc 570
           ||||||||||||||||||||
Sbjct: 465 agattggcaataaggccatc 484

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>emb|CR712836.2|CNS0GCZ4 Tetraodon nigroviridis full-length cDNA
          Length = 498

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 551 agattggcaataaggccatc 570
           ||||||||||||||||||||
Sbjct: 467 agattggcaataaggccatc 486

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>emb|CR381644.8| Zebrafish DNA sequence from clone CH211-80A15 in linkage group 8,
              complete sequence
          Length = 171750

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    agatcaaatttctcttcaaa 198
              ||||||||||||||||||||
Sbjct: 162037 agatcaaatttctcttcaaa 162056

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>gb|AC122427.6| Mus musculus BAC clone RP24-175C2 from chromosome 1, complete sequence
          Length = 180773

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 595   aatactcaactttgttaact 614
             ||||||||||||||||||||
Sbjct: 51855 aatactcaactttgttaact 51836

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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 187     tttctcttcaaacttctcat 206
               ||||||||||||||||||||
Sbjct: 4415244 tttctcttcaaacttctcat 4415225

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 472      atcctcttttggcaaattga 491
                ||||||||||||||||||||
Sbjct: 23619747 atcctcttttggcaaattga 23619766

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>gb|AC016717.8| Homo sapiens BAC clone RP11-314B1 from 2, complete sequence
          Length = 210558

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    agatggatgaaaggttggac 44
             ||||||||||||||||||||
Sbjct: 23162 agatggatgaaaggttggac 23143

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>gb|AY204469.1| Myxococcus xanthus clone C1213 putative histidine kinase, sensor
            protein, MsrA-like protein, adventurous gliding motility
            protein R (aglR), adventurous gliding motility protein S
            (aglS), putative membrane protein, histidine kinase,
            hypothetical proteins, and NH3-dependent NAD+ synthetase
            genes, complete cds
          Length = 20250

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 53   ctgctgctcctcctccgtgg 72
            ||||||||||||||||||||
Sbjct: 7724 ctgctgctcctcctccgtgg 7705

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>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0518F01
          Length = 154541

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 472   atcctcttttggcaaattga 491
             ||||||||||||||||||||
Sbjct: 82446 atcctcttttggcaaattga 82465

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>dbj|AP004636.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0685B10
          Length = 148544

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   aatctaataaaagatgatta 394
             ||||||||||||||||||||
Sbjct: 85200 aatctaataaaagatgatta 85181

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>dbj|AB093612.1| Turnip mosaic virus gene for polyprotein, complete cds, isolate:NZ290
          Length = 9798

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 190  ctcttcaaacttctcattgc 209
            ||||||||||||||||||||
Sbjct: 5491 ctcttcaaacttctcattgc 5510

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>gb|AC162175.10| Mus musculus chromosome 7, clone RP23-327E18, complete sequence
          Length = 224178

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   acctcacatgctctacactt 270
             ||||||||||||||||||||
Sbjct: 54462 acctcacatgctctacactt 54481


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,125,932
Number of Sequences: 3902068
Number of extensions: 6125932
Number of successful extensions: 139965
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139661
Number of HSP's gapped (non-prelim): 287
length of query: 670
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 647
effective length of database: 17,143,297,704
effective search space: 11091713614488
effective search space used: 11091713614488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result