ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal5p22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY224493.1| Oryza sativa (japonica cultivar-group) isolate 30... 127 7e-27
2dbj|AK120907.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 7e-27
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-18
4dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-18
5gb|AY110583.1| Zea mays CL25181_-1 mRNA sequence 90 1e-15
6ref|XM_464065.1| Oryza sativa (japonica cultivar-group), mRNA 68 5e-09
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-06
8dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-06
9dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-06
10ref|NM_101533.3| Arabidopsis thaliana oxidoreductase AT1G16720 m... 44 0.075
11gb|AY128723.1| Arabidopsis thaliana unknown protein (At1g16720) ... 44 0.075
12gb|AY062632.1| Arabidopsis thaliana Unknown protein (At1g16720; ... 44 0.075
13gb|AC133940.4| Mus musculus BAC clone RP23-433D1 from 16, comple... 42 0.30
14gb|AC156163.2| Mus musculus BAC clone RP24-122E11 from chromosom... 38 4.6
15gb|AC161444.4| Mus musculus chromosome 1, clone RP23-446D9, comp... 38 4.6
16gb|AC159624.2| Mus musculus BAC clone RP24-270G2 from chromosome... 38 4.6
17gb|AC116591.4| Mus musculus BAC clone RP24-90K1 from chromosome ... 38 4.6
18gb|AC131039.7| Mus musculus chromosome 1, clone RP23-274I23, com... 38 4.6
19gb|AC135086.3| Mus musculus BAC clone RP23-110L10 from chromosom... 38 4.6
20gb|AC132316.3| Mus musculus BAC clone RP24-236C17 from chromosom... 38 4.6
21gb|AC125147.4| Mus musculus BAC clone RP24-350A15 from chromosom... 38 4.6
22gb|AC098706.3| Mus musculus BAC clone RP23-1I11 from 14, complet... 38 4.6
23gb|AC112662.7| Mus musculus chromosome 5, clone RP23-467F2, comp... 38 4.6
24gb|AC163268.4| Mus musculus chromosome 1, clone RP24-63C6, compl... 38 4.6
25gb|AC160051.2| Mus musculus BAC clone RP24-395P13 from chromosom... 38 4.6
26gb|AC156631.2| Mus musculus BAC clone RP24-501O22 from chromosom... 38 4.6
27emb|BX324215.14| Zebrafish DNA sequence from clone DKEY-42L16 in... 38 4.6
28gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome... 38 4.6
29gb|AC112944.7| Mus musculus chromosome 5, clone RP23-411F8, comp... 38 4.6
30emb|BX000465.12| Zebrafish DNA sequence from clone DKEY-30A6 in ... 38 4.6
31emb|CT573047.6| Mouse DNA sequence from clone RP23-73L5 on chrom... 38 4.6
32emb|AL772203.14| Mouse DNA sequence from clone RP23-398I1 on chr... 38 4.6
33gb|AC149060.4| Mus musculus BAC clone RP23-242D8 from 7, complet... 38 4.6
34gb|AC151413.2| Mus musculus BAC clone RP23-103N6 from 19, comple... 38 4.6
35gb|AC158638.15| Mus musculus 10 BAC RP24-117O6 (Roswell Park Can... 38 4.6 
>gb|AY224493.1| Oryza sativa (japonica cultivar-group) isolate 30868 unknown mRNA
          Length = 1503

 Score =  127 bits (64), Expect = 7e-27
 Identities = 94/104 (90%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttctcttctgttaggttcaattccggaacctgtgcatgagaccagtatgaagtctgtttc 60
            ||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||||||
Sbjct: 1161 ttctcttctgttaggttcaatcccagaacctgagcatgagaccagaatgaagtctgtttc 1102

                                                        
Query: 61   ttgaccggtaggtaatgctttgatgtactccagtatcagctcaa 104
            |||||| ||||| || ||||||||||| |||| ||| |||||||
Sbjct: 1101 ttgaccagtaggcaaagctttgatgtattccaatataagctcaa 1058
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>dbj|AK120907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031L08, full
            insert sequence
          Length = 2197

 Score =  127 bits (64), Expect = 7e-27
 Identities = 94/104 (90%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttctcttctgttaggttcaattccggaacctgtgcatgagaccagtatgaagtctgtttc 60
            ||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||||||
Sbjct: 1655 ttctcttctgttaggttcaatcccagaacctgagcatgagaccagaatgaagtctgtttc 1596

                                                        
Query: 61   ttgaccggtaggtaatgctttgatgtactccagtatcagctcaa 104
            |||||| ||||| || ||||||||||| |||| ||| |||||||
Sbjct: 1595 ttgaccagtaggcaaagctttgatgtattccaatataagctcaa 1552
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                            
Query: 1        ttctcttctgttaggttcaattccggaacctgtgcatgagaccagtatgaagtctgtttc 60
                ||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||||||
Sbjct: 29247771 ttctcttctgttaggttcaatcccagaacctgagcatgagaccagaatgaagtctgtttc 29247830

                      
Query: 61       ttgacc 66
                ||||||
Sbjct: 29247831 ttgacc 29247836
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>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0018H04
          Length = 142053

 Score = 99.6 bits (50), Expect = 1e-18
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                         
Query: 1     ttctcttctgttaggttcaattccggaacctgtgcatgagaccagtatgaagtctgtttc 60
             ||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||||||
Sbjct: 10569 ttctcttctgttaggttcaatcccagaacctgagcatgagaccagaatgaagtctgtttc 10628

                   
Query: 61    ttgacc 66
             ||||||
Sbjct: 10629 ttgacc 10634
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>gb|AY110583.1| Zea mays CL25181_-1 mRNA sequence
          Length = 594

 Score = 89.7 bits (45), Expect = 1e-15
 Identities = 75/85 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctcttctgttaggttcaattccggaacctgtgcatgagaccagtatgaagtctgtttc 60
           |||||||||||||| |||||| || |||||||  ||||| |||| |||||||||||||||
Sbjct: 509 ttctcttctgttagattcaatcccagaacctgaacatgacaccaatatgaagtctgtttc 568

                                    
Query: 61  ttgaccggtaggtaatgctttgatg 85
           |||||| |||||||| || ||||||
Sbjct: 569 ttgaccagtaggtaaagccttgatg 593
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>ref|XM_464065.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1797

 Score = 67.9 bits (34), Expect = 5e-09
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttctcttctgttaggttcaattccggaacctgtgcatgagaccagtatgaagtctgtttc 60
            |||||||||||||||||| ||||| || ||||||||||| ||||  |  | |||||||||
Sbjct: 1455 ttctcttctgttaggttcgattccagagcctgtgcatgaaaccaaaacaatgtctgtttc 1396

                          
Query: 61   ttgaccggtaggta 74
            |||||| |||||||
Sbjct: 1395 ttgaccagtaggta 1382
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                           
Query: 1       ttctcttctgttaggttcaattccggaacctgtgcatgagaccagtatgaagtctgtttc 60
               |||||||||||||||||| ||||| || ||||||||||| ||||  |  | |||||||||
Sbjct: 2004332 ttctcttctgttaggttcgattccagagcctgtgcatgaaaccaaaacaatgtctgtttc 2004273

                     
Query: 61      ttgacc 66
               ||||||
Sbjct: 2004272 ttgacc 2004267
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>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0026E05
          Length = 159860

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                         
Query: 1     ttctcttctgttaggttcaattccggaacctgtgcatgagaccagtatgaagtctgtttc 60
             |||||||||||||||||| ||||| || ||||||||||| ||||  |  | |||||||||
Sbjct: 54540 ttctcttctgttaggttcgattccagagcctgtgcatgaaaccaaaacaatgtctgtttc 54481

                   
Query: 61    ttgacc 66
             ||||||
Sbjct: 54480 ttgacc 54475
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>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0081C13
          Length = 144624

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                          
Query: 1      ttctcttctgttaggttcaattccggaacctgtgcatgagaccagtatgaagtctgtttc 60
              |||||||||||||||||| ||||| || ||||||||||| ||||  |  | |||||||||
Sbjct: 143893 ttctcttctgttaggttcgattccagagcctgtgcatgaaaccaaaacaatgtctgtttc 143834

                    
Query: 61     ttgacc 66
              ||||||
Sbjct: 143833 ttgacc 143828
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>ref|NM_101533.3| Arabidopsis thaliana oxidoreductase AT1G16720 mRNA, complete cds
          Length = 2100

 Score = 44.1 bits (22), Expect = 0.075
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 41   accagtatgaagtctgtttcttgaccggtaggtaatgctttgatgtactc 90
            ||||| || ||||||||||||||||| | ||| || ||||| ||||||||
Sbjct: 1488 accagaataaagtctgtttcttgacccgcaggcaaagcttttatgtactc 1439
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>gb|AY128723.1| Arabidopsis thaliana unknown protein (At1g16720) mRNA, complete cds
          Length = 1863

 Score = 44.1 bits (22), Expect = 0.075
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 41   accagtatgaagtctgtttcttgaccggtaggtaatgctttgatgtactc 90
            ||||| || ||||||||||||||||| | ||| || ||||| ||||||||
Sbjct: 1415 accagaataaagtctgtttcttgacccgcaggcaaagcttttatgtactc 1366
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>gb|AY062632.1| Arabidopsis thaliana Unknown protein (At1g16720; F17F16.7) mRNA,
            complete cds
          Length = 2040

 Score = 44.1 bits (22), Expect = 0.075
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 41   accagtatgaagtctgtttcttgaccggtaggtaatgctttgatgtactc 90
            ||||| || ||||||||||||||||| | ||| || ||||| ||||||||
Sbjct: 1488 accagaataaagtctgtttcttgacccgcaggcaaagcttttatgtactc 1439
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>gb|AC133940.4| Mus musculus BAC clone RP23-433D1 from 16, complete sequence
          Length = 172079

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      ttctcttctgttaggttcaat 21
              |||||||||||||||||||||
Sbjct: 123013 ttctcttctgttaggttcaat 122993
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>gb|AC156163.2| Mus musculus BAC clone RP24-122E11 from chromosome 9, complete sequence
          Length = 141660

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     ttctcttctgttaggttca 19
             |||||||||||||||||||
Sbjct: 74828 ttctcttctgttaggttca 74846
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>gb|AC161444.4| Mus musculus chromosome 1, clone RP23-446D9, complete sequence
          Length = 182353

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      ttctcttctgttaggttca 19
              |||||||||||||||||||
Sbjct: 126628 ttctcttctgttaggttca 126610
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>gb|AC159624.2| Mus musculus BAC clone RP24-270G2 from chromosome 12, complete sequence
          Length = 187364

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      ttctcttctgttaggttca 19
              |||||||||||||||||||
Sbjct: 115431 ttctcttctgttaggttca 115413
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>gb|AC116591.4| Mus musculus BAC clone RP24-90K1 from chromosome 14, complete sequence
          Length = 237561

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     ttctcttctgttaggttca 19
             |||||||||||||||||||
Sbjct: 77058 ttctcttctgttaggttca 77040
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>gb|AC131039.7| Mus musculus chromosome 1, clone RP23-274I23, complete sequence
          Length = 187304

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      ttctcttctgttaggttca 19
              |||||||||||||||||||
Sbjct: 186349 ttctcttctgttaggttca 186331
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>gb|AC135086.3| Mus musculus BAC clone RP23-110L10 from chromosome 15, complete
             sequence
          Length = 225159

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     ttctcttctgttaggttca 19
             |||||||||||||||||||
Sbjct: 59134 ttctcttctgttaggttca 59116
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>gb|AC132316.3| Mus musculus BAC clone RP24-236C17 from chromosome 7, complete
            sequence
          Length = 146778

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 72   gtaatgctttgatgtactc 90
            |||||||||||||||||||
Sbjct: 9349 gtaatgctttgatgtactc 9367
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>gb|AC125147.4| Mus musculus BAC clone RP24-350A15 from chromosome 7, complete
            sequence
          Length = 184180

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 86   tactccagtatcagctcaa 104
            |||||||||||||||||||
Sbjct: 6290 tactccagtatcagctcaa 6272
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>gb|AC098706.3| Mus musculus BAC clone RP23-1I11 from 14, complete sequence
          Length = 234326

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     ttctcttctgttaggttca 19
             |||||||||||||||||||
Sbjct: 41280 ttctcttctgttaggttca 41262
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>gb|AC112662.7| Mus musculus chromosome 5, clone RP23-467F2, complete sequence
          Length = 200679

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   ttctcttctgttaggttca 19
           |||||||||||||||||||
Sbjct: 768 ttctcttctgttaggttca 786
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>gb|AC163268.4| Mus musculus chromosome 1, clone RP24-63C6, complete sequence
          Length = 224994

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      ttctcttctgttaggttca 19
              |||||||||||||||||||
Sbjct: 131096 ttctcttctgttaggttca 131114
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>gb|AC160051.2| Mus musculus BAC clone RP24-395P13 from chromosome 9, complete
          sequence
          Length = 199433

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  ttctcttctgttaggttca 19
          |||||||||||||||||||
Sbjct: 70 ttctcttctgttaggttca 88
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>gb|AC156631.2| Mus musculus BAC clone RP24-501O22 from chromosome 9, complete sequence
          Length = 165660

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     ttctcttctgttaggttca 19
             |||||||||||||||||||
Sbjct: 28070 ttctcttctgttaggttca 28052
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>emb|BX324215.14| Zebrafish DNA sequence from clone DKEY-42L16 in linkage group 22,
              complete sequence
          Length = 207877

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     atgaagtctgtttcttgac 65
              |||||||||||||||||||
Sbjct: 176811 atgaagtctgtttcttgac 176829
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>gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome 7, complete
            sequence
          Length = 213581

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 72   gtaatgctttgatgtactc 90
            |||||||||||||||||||
Sbjct: 5532 gtaatgctttgatgtactc 5514
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>gb|AC112944.7| Mus musculus chromosome 5, clone RP23-411F8, complete sequence
          Length = 209174

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     ttctcttctgttaggttca 19
             |||||||||||||||||||
Sbjct: 35695 ttctcttctgttaggttca 35677
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>emb|BX000465.12| Zebrafish DNA sequence from clone DKEY-30A6 in linkage group 22, complete
              sequence
          Length = 214999

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     atgaagtctgtttcttgac 65
              |||||||||||||||||||
Sbjct: 169867 atgaagtctgtttcttgac 169849
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>emb|CT573047.6| Mouse DNA sequence from clone RP23-73L5 on chromosome 14, complete
              sequence
          Length = 211944

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      ttctcttctgttaggttca 19
              |||||||||||||||||||
Sbjct: 186348 ttctcttctgttaggttca 186330
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>emb|AL772203.14| Mouse DNA sequence from clone RP23-398I1 on chromosome 4, complete
             sequence
          Length = 157996

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     ttctcttctgttaggttca 19
             |||||||||||||||||||
Sbjct: 71092 ttctcttctgttaggttca 71074
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>gb|AC149060.4| Mus musculus BAC clone RP23-242D8 from 7, complete sequence
          Length = 205543

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    tactccagtatcagctcaa 104
             |||||||||||||||||||
Sbjct: 39917 tactccagtatcagctcaa 39935
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>gb|AC151413.2| Mus musculus BAC clone RP23-103N6 from 19, complete sequence
          Length = 230420

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      ttctcttctgttaggttca 19
              |||||||||||||||||||
Sbjct: 144756 ttctcttctgttaggttca 144738
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>gb|AC158638.15| Mus musculus 10 BAC RP24-117O6 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 185145

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     ttctgttaggttcaattcc 24
             |||||||||||||||||||
Sbjct: 55172 ttctgttaggttcaattcc 55154


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 731,941
Number of Sequences: 3902068
Number of extensions: 731941
Number of successful extensions: 47048
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46963
Number of HSP's gapped (non-prelim): 81
length of query: 104
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 83
effective length of database: 17,151,101,840
effective search space: 1423541452720
effective search space used: 1423541452720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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