ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal5p11 |
|---|---|
| Clone Library Name | barley_pub |
>PRP31_BRARE (Q7SXM7) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 508 Score = 38.5 bits (88), Expect = 0.018 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 10/98 (10%) Frame = -2 Query: 668 GXGYGMLGQAXSGKLRVSAAQNKLAAKVAKKFKERSYXXXXX----------XXXXXXXX 519 G G LG++ SG++R + + A+++K + Sbjct: 404 GFSLGQLGKSGSGRVRQAQVNDSTKARISKSLQRTLQKQSMTYGGKSTVRDRSSGTSSSV 463 Query: 518 AFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRI 405 AFTP+QG+E+ NP A + Q YFS F ++ Sbjct: 464 AFTPLQGLEIVNPQAAEKKVAEANQK-YFSNMAEFLKV 500
>PRP31_SCHPO (O42904) Pre-mRNA-splicing factor 31| Length = 518 Score = 37.7 bits (86), Expect = 0.031 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Frame = -2 Query: 662 GYGMLGQAXSGKLRVSA--AQNKLAAKVAKKFKERSYXXXX--XXXXXXXXXAFTPVQGI 495 G GMLGQ GK+R + ++ KL A+K + +S +FTP+QGI Sbjct: 419 GLGMLGQEGEGKIRAVSIDSRTKLRLPKARKAQLQSMAQKNPLAASGLQSSLSFTPIQGI 478 Query: 494 ELSNP 480 EL NP Sbjct: 479 ELVNP 483
>PRP31_XENTR (Q6NVP6) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 498 Score = 37.4 bits (85), Expect = 0.041 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 10/100 (10%) Frame = -2 Query: 668 GXGYGMLGQAXSGKLRVSAAQNKLAAKVAKKFKER----------SYXXXXXXXXXXXXX 519 G G LG++ SG++R + A+++K + Sbjct: 392 GFSLGHLGKSGSGRIRQAQVNEATKARISKTLQRTLQKQSVVYGGKSTIRDRSSGTASSV 451 Query: 518 AFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRINN 399 AFTP+QG+E+ NP A + Q YFS F ++ + Sbjct: 452 AFTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKVKS 490
>PRP31_XENLA (Q5U5C5) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 498 Score = 37.4 bits (85), Expect = 0.041 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 10/100 (10%) Frame = -2 Query: 668 GXGYGMLGQAXSGKLRVSAAQNKLAAKVAKKFKER----------SYXXXXXXXXXXXXX 519 G G LG++ SG++R + A+++K + Sbjct: 392 GFSLGHLGKSGSGRIRQAQVNEATKARISKTLQRTLQKQSVVYGGKSTVRDRSSGTASSV 451 Query: 518 AFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRINN 399 AFTP+QG+E+ NP A + Q YFS F ++ + Sbjct: 452 AFTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKVKS 490
>PRP31_MOUSE (Q8CCF0) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) (U4/U6 snRNP 61 kDa protein) (Protein 61K) Length = 499 Score = 36.6 bits (83), Expect = 0.070 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 10/98 (10%) Frame = -2 Query: 668 GXGYGMLGQAXSGKLRVSAAQNKLAAKVAKKFKER----------SYXXXXXXXXXXXXX 519 G G LG++ SG++R + A+++K + Sbjct: 393 GFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSVVYGGKSTIRDRSSGTASSV 452 Query: 518 AFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRI 405 AFTP+QG+E+ NP A + Q YFS F ++ Sbjct: 453 AFTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKV 489
>PRP31_HUMAN (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) (U4/U6 snRNP 61 kDa protein) (hPrp31) (Protein 61K) (Serologically defined breast cancer antigen NY-BR-99) Length = 499 Score = 36.6 bits (83), Expect = 0.070 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 10/98 (10%) Frame = -2 Query: 668 GXGYGMLGQAXSGKLRVSAAQNKLAAKVAKKFKER----------SYXXXXXXXXXXXXX 519 G G LG++ SG++R + A+++K + Sbjct: 393 GFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSVVYGGKSTIRDRSSGTASSV 452 Query: 518 AFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRI 405 AFTP+QG+E+ NP A + Q YFS F ++ Sbjct: 453 AFTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKV 489
>NU1M_SAGOE (O78694) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 30.8 bits (68), Expect = 3.8 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +1 Query: 355 FSSSD*IPTSVTHGLLLIRENVPVSEK*VLWVPLPRRFP 471 F+ +PTS T L LI + +S +LW PLP +P Sbjct: 56 FTKEPLLPTSSTSTLYLIAPTLALSISLLLWTPLPMPYP 94
>TPIS_ANASP (Q8YP17) Triosephosphate isomerase (EC 5.3.1.1) (TIM)| (Triose-phosphate isomerase) Length = 241 Score = 30.4 bits (67), Expect = 5.0 Identities = 12/46 (26%), Positives = 27/46 (58%) Frame = -2 Query: 509 PVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRINNRP*VTEVGI 372 P + + + HG+L+ G Q+ +++E G ++ + P +TE+G+ Sbjct: 44 PFTDLAILSQSLHGSLVQLGAQNVHWAENGAYTGEISGPMLTEIGV 89
>MRP5_ARATH (Q7GB25) Multidrug resistance-associated protein 5 (EC 3.6.3.44)| (Glutathione S-conjugate transporting ATPase 5) (ATP-energized glutathione S-conjugate pump 5) Length = 1514 Score = 29.6 bits (65), Expect = 8.6 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 13/57 (22%) Frame = +3 Query: 453 ASKKVP--VRMWV*QLYSLNWC-----------KGQTRCQSRCCATGTITPLLEFLC 584 +S+K+P VR+W +S+ C +G +RC S A +TP L FLC Sbjct: 137 SSEKLPFLVRIWWFLAFSICLCTMYVDGRRLAIEGWSRCSSHVVANLAVTPALGFLC 193 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,756,422 Number of Sequences: 219361 Number of extensions: 2146021 Number of successful extensions: 4539 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 4369 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4538 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
