ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal5p06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MIAA_THET2 (Q72L59) tRNA delta(2)-isopentenylpyrophosphate trans... 29 3.5
2Y371_MYCPN (P75410) Hypothetical protein MPN371 (A19_orf211) 28 7.7

>MIAA_THET2 (Q72L59) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 302

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 7   PPPPPFRRETYIWVKXSSRVSSPILFTTSHAYPPWMRRXEESHRATARGLESPRR 171
           PPP P  +E  +W +  +R    +L   + A P   RR  ++ R   R LE  RR
Sbjct: 115 PPPDPGVQEA-LWAELEARGLEALLAELARASPEDARRVGKNPRRLVRALEVLRR 168



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>Y371_MYCPN (P75410) Hypothetical protein MPN371 (A19_orf211)|
          Length = 211

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 64  VSSPILFTTSHAYPPWMRRXEESHRATARGLESPRRRRGETYW 192
           V SP  F T+H+ P    R +       RGL  P  RRG  +W
Sbjct: 153 VVSPTPFATAHSTPRCAARVKRQTGRDWRGLAPP--RRGPCFW 193


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,171,470
Number of Sequences: 219361
Number of extensions: 776523
Number of successful extensions: 2126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2124
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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