>NAC78_ARATH (Q84K00) NAC domain-containing protein 78 (ANAC078)|
          Length = 567

 Score = 38.1 bits (87), Expect = 0.021
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
 Frame = -3

Query: 590 ALSGPSQIRVTAGIVQLGDHSFTGNSD-NWPLQKNGVFNLLLSFTVESNVSTKLIGFDDE 414
           A      + VTAG++++ + +   +S   W   KNG  N++LSF V        +  DD 
Sbjct: 476 AAQSSGSVHVTAGMMRISNMTLAADSGMGWSYDKNGNLNVVLSFGV--------VQQDDA 527

Query: 413 PATTRVSTVPTVLRGGLYLFFVSAMILMLSFKVGSCIYSR 294
              +   T  T  R  L    +  ++L +SFK+ + + +R
Sbjct: 528 MTASGSKTGITATRAMLVFMCLWVLLLSVSFKIVTMVSAR 567

>GLGB_CHLCV (Q823Y5) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 719

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -2

Query: 471 PFFHRGEQRVHEVDW--FRRRASHYTGEHRPNGAARRPVPLLCLGHDSHVEFQSRVLHLQ 298
           P+F +G+ +     W  F+   ++    +R +G  R    LLC+ H S   F S VLH Q
Sbjct: 607 PYFWKGDHKQESFLWVDFKDTKNNVISYYRFSGEDRSSA-LLCIHHFSSEYFPSYVLHCQ 665

Query: 297 QVK 289
            +K
Sbjct: 666 GIK 668

>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 4391

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 219  HHRGGALYSPAKPKENSPKGRLLALPAVDAGPYFETQHENHGRDKEEVQAAAQHRWDGAH 398
            H RGG+L  PA+ + +  + RLL +   D+G Y      + G  +  V    Q R  G+H
Sbjct: 2471 HKRGGSL--PARHQVHGSRLRLLQVTPADSGEYVCRVVGSSGTQEASVLVTIQQRLSGSH 2528

>RPOA_DEHSC (Q3ZZP6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 330

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
 Frame = +1

Query: 289 LYLL*MQDPTLKLNMRIMAETKKRYRPPRSTVGTVLTRVVAGSSSKPI---NFVDTLLST 459
           LYLL +      LN+ +  E  + YRPP S   T +  +   +   PI   NF    +  
Sbjct: 123 LYLLTLDSDDAVLNVELEVELGRGYRPPESAENTPIGTIPVDAIFTPIRKVNFTTEPMHV 182

Query: 460 VKERSRLKTPFFCRGQLSELPVKLWSPSWTMPA 558
            +E S           L  L +++W+     PA
Sbjct: 183 GRETS-----------LERLVLEVWTDGTVEPA 204

>CCPA_STAES (Q8CNV8) Probable catabolite control protein A|
          Length = 329

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -3

Query: 533 HSFTGNSDNWPLQKNGVFNLLLSFTVESNVSTKLIGFDDEPATTRVSTVPTVLRG 369
           HS   NSDN P ++  +FN LLS  V+  +       ++  +    S+VP V+ G
Sbjct: 92  HSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTISEEIKSLINQSSVPVVVSG 146

>CCPA_STAEQ (Q5HNH3) Probable catabolite control protein A|
          Length = 329

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -3

Query: 533 HSFTGNSDNWPLQKNGVFNLLLSFTVESNVSTKLIGFDDEPATTRVSTVPTVLRG 369
           HS   NSDN P ++  +FN LLS  V+  +       ++  +    S+VP V+ G
Sbjct: 92  HSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTISEEIKSLINQSSVPVVVSG 146

>CCPA_STAAW (Q8NW33) Probable catabolite control protein A|
          Length = 329

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 533 HSFTGNSDNWPLQKNGVFNLLLSFTVESNVSTKLIGFDDEPATTRVSTVPTVLRG 369
           HS   NSDN P ++  +FN LLS  V+  +       ++       S+VP V+ G
Sbjct: 92  HSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSG 146

>CCPA_STAAS (Q6G8J1) Probable catabolite control protein A|
          Length = 329

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 533 HSFTGNSDNWPLQKNGVFNLLLSFTVESNVSTKLIGFDDEPATTRVSTVPTVLRG 369
           HS   NSDN P ++  +FN LLS  V+  +       ++       S+VP V+ G
Sbjct: 92  HSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSG 146

>CCPA_STAAR (Q6GFX2) Probable catabolite control protein A|
          Length = 329

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 533 HSFTGNSDNWPLQKNGVFNLLLSFTVESNVSTKLIGFDDEPATTRVSTVPTVLRG 369
           HS   NSDN P ++  +FN LLS  V+  +       ++       S+VP V+ G
Sbjct: 92  HSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSG 146

>CCPA_STAAN (P99175) Probable catabolite control protein A|
          Length = 329

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 533 HSFTGNSDNWPLQKNGVFNLLLSFTVESNVSTKLIGFDDEPATTRVSTVPTVLRG 369
           HS   NSDN P ++  +FN LLS  V+  +       ++       S+VP V+ G
Sbjct: 92  HSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSG 146

>CCPA_STAAM (P67655) Probable catabolite control protein A|
          Length = 329

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 533 HSFTGNSDNWPLQKNGVFNLLLSFTVESNVSTKLIGFDDEPATTRVSTVPTVLRG 369
           HS   NSDN P ++  +FN LLS  V+  +       ++       S+VP V+ G
Sbjct: 92  HSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSG 146

>CCPA_STAAC (Q5HF38) Probable catabolite control protein A|
          Length = 329

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 533 HSFTGNSDNWPLQKNGVFNLLLSFTVESNVSTKLIGFDDEPATTRVSTVPTVLRG 369
           HS   NSDN P ++  +FN LLS  V+  +       ++       S+VP V+ G
Sbjct: 92  HSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSG 146

>PUT1_YEAST (P09368) Proline oxidase, mitochondrial precursor (EC 1.5.3.-)|
           (Proline dehydrogenase)
          Length = 476

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -3

Query: 500 LQKNGVFNLLLSFTVESNVSTKLIGFD--DEPATTRVSTVPTVL 375
           LQK G+ N++LS T+E++  TK +     D+     +S+V  +L
Sbjct: 128 LQKRGISNMMLSLTIENSEGTKSLSSTPVDQIVKETISSVHNIL 171

>GLGB2_XANAC (Q8PQA2) 1,4-alpha-glucan branching enzyme 2 (EC 2.4.1.18)|
           (Glycogen branching enzyme 2) (BE 2)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase 2)
          Length = 719

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
 Frame = -2

Query: 525 HRQLRQLAPAEEWSLQPTPFFHRGEQRVHEVDWF----RRRASHYTGEHRPNGAARRPVP 358
           HR ++QL      +L+ TP  +RG  R    DW      R +      H P+G A    P
Sbjct: 587 HRGMQQLVGDLNAALRRTPALYRGTHRAEGFDWSVADDARNSVLAFVRHDPDGGA----P 642

Query: 357 LLCLG-------HDSHV 328
           LL +        HD HV
Sbjct: 643 LLAVSNLTPQPHHDYHV 659

>CCPA_STAXY (Q56194) Probable catabolite control protein A|
          Length = 329

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 533 HSFTGNSDNWPLQKNGVFNLLLSFTVESNVSTKLIGFDDEPATTRVSTVPTVLRG 369
           HS   NSDN P ++  +FN LLS  V+  +       ++       S+VP V+ G
Sbjct: 92  HSIISNSDNDPSKEKEIFNNLLSKQVDGIIFLGGTISEEIKDLINKSSVPVVVSG 146


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,649,584
Number of Sequences: 219361
Number of extensions: 1980395
Number of successful extensions: 5194
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5194
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)